The modern mass spectrometer—a complete chemical laboratory

Using nitrobenzene as an example, various ways in which a contemporary mass spectrometer can be utilized to yield a wealth of information about the compound studied are reviewed. Applying a variety of different techniques and procedures, in addition to the conventional low resolution mass spectrum, the following nitrobenzene spectra have been obtained: collision induced dissociation mass spectrum, mass analysed ion kinetic energy spectra, collision induced dissociation mass analysed ion kinetic energy spectra, spectra obtained at constant B/E, spectra obtained at constant B²/E, high voltage scans of metastable ion fragmentation processes, consecutive fragmentations in different field free regions, charge exchange mass spectra, charge stripping mass spectra, doubly charged ion mass spectra, chemical ionization mass spectra, negative ion mass spectra, negative ion mass analysed ion kinetic energy spectra, negative ion mass analysed ion kinetic energy collision induced dissociation spectra, charge inversion spectra, etc. The complementary types of information available from the above studies are discussed to show the unique versatility of mass spectrometry as a technique for the examination of organic compounds.     

The mass spectrometry of polychlorinated dibenzo-p-dioxins

The negative ion chemical ionization mass spectra of polychlorinated dibenzo-p-dioxins using oxygen, methane and methane/oxygen are reported together with their methane positive ion chemical ionization mass spectra and conventional electron impact spectra. The methane/oxygen negative ion chemical ionization mass spectra proved to be the most useful of the negative ion spectra for structure determination.     

Optimization of a quadrupole ion storage trap as a source for time‐of‐flight mass spectrometry

Designs of a quadrupole ion trap (QIT) as a source for time‐of‐flight (TOF) mass spectrometry are evaluated for mass resolution, ion trapping, and laser activation of trapped ions. Comparisons are made with the standard hyperbolic electrode ion trap geometry for TOF mass analysis in both linear and reflectron modes. A parallel‐plate design for the QIT is found to give significantly improved TOF mass spectrometer performance. Effects of ion temperature, trapped ion cloud size, mass, and extraction field on mass resolution are investigated in detail by simulation of the TOF peak profiles. Mass resolution (m/Δm) values of several thousand are predicted even at room temperature with moderate extraction fields for the optimized design. The optimized design also allows larger radial ion collection size compared with the hyperbolic ion trap, without compromising the mass resolution. The proposed design of the QIT also improves the ion–laser interaction volume and photon collection efficiency for fluorescence measurements on trapped ions. Copyright © 2011 John Wiley & Sons, Ltd.     

Über quantitative Beziehungen zwischen Fragmenten und ihren relativen Intensitäten im Massenspektrometer. V—Untersuchungen an N-t-Alkylaminen und -acetamiden

The ion intensity ratios from α-fissions of N-t-alkylethylamines are independent of electron energy above 18 eV and they directly follow the ‘ion mass effect’ in this region. The course of the intensity ratios over the whole energy range can be explained by combination of appearance energy differences and the ion mass effect. In the upper energy region the increase of the ion intensity ratios I(M? R_large): I(M? R_small) normally found with increasing electron energy is mainly caused by successive decomposition of the ions. This is shown from investigations of N-t-alkylacetamides. A correlation is found between the masses of the primary ions and the tendency towards secondary ion formation, and the internal energy of the primary ions is found to have an influence too. The ‘ion mass effect’ is not a direct effect of the ion masses.     

The negative ion mass spectra of mixtures of sulphur and organic compounds. I—The formation of [M+Sn]− from the mixture of sulphur and dinitriles

The negative ion mass spectra of sulphur, dinitriles and their mixtures were studied. The abundance of negative ions of sulphur was almost comparable to that of positive ions. In the negative ion mass spectrum of a mixture of sulphur and dinitrile, intense and characteristic peaks of [M + S_n]^? (n = 2, 3, 4, etc.) were observed resulting from ion–molecule association of dinitrile with the S_n^? anions. As a standard sample of a negative ion mass spectrum, sulphur itself has proved useful in the lower mass region (below m/e 256: S₈^?).     

Dissociation of the diphenylnitrile imine radical cation into benzonitrile and [phenylnitrene]+˙

The collision induced dissociation/mass analysed ion kinetic energy mass spectra of 2,5-diphenyltetrazole demonstrate the decay sequence [diphenyltetrazole]^+˙→ [diphenylnitrile imine]^+˙→ m/z 91. The m/z 91 ion was shown to be identical to the ion formed by loss of N₂ from the phenyl azide radical cation, thus suggesting the phenylnitrene structure for the m/z 91 ion.     

Identification of isobaric product ions in electrospray ionization mass spectra of fentanyl using multistage mass spectrometry and deuterium labeling

Isobaric product ions cannot be differentiated by exact mass determinations, although in some cases deuterium labeling can provide useful structural information for identifying isobaric ions. Proposed fragmentation pathways of fentanyl were investigated by electrospray ionization ion trap mass spectrometry coupled with deuterium labeling experiments and spectra of regiospecific deuterium labeled analogs. The major product ion of fentanyl under tandem mass spectrometry (MS/MS) conditions (m/z 188) was accounted for by a neutral loss of N‐phenylpropanamide. 1‐(2‐Phenylethyl)‐1,2,3,6‐tetrahydropyridine (1) was proposed as the structure of the product ion. However, further fragmentation (MS³) of the fentanyl m/z 188 ion gave product ions that were different from the product ion in the MS/MS fragmentation of synthesized 1, suggesting that the m/z 188 product ion from fentanyl includes an isobaric structure different from the structure of 1. MS/MS fragmentation of fentanyl in deuterium oxide moved one of the isobars to 1 Da higher mass, and left the other isobar unchanged in mass. Multistage mass spectral data from deuterium‐labeled proposed isobaric structures provided support for two fragmentation pathways. The results illustrate the utility of multistage mass spectrometry and deuterium labeling in structural assignment of isobaric product ions. Copyright © 2010 John Wiley & Sons, Ltd.     

Analysis of the linkage positions and isomers of monosaccharide units in oligosaccharides by negativ secondary ion mass spectrometry in combination with the stereoselective reaction with substituted boronic acid

The negative secondary ion mass spectrometry, in combination with the stereoselective derivatizations with substituted boronic acid RB(OH)₂, was used in the analysis of fourteen oligosaccharides. The mass spectra of the derivatives provide information on their linkage positions and isomerism of the individual monosacaccharide units. The results indicated that among the derivatives of the oligosaccharides analyzed, those with 1–4 and 1–6 linkages all presented the ion peaks at m/z 287, sometimes one more peak at m/z 449. Furthermore, a relationship was found between the linkage positions and the intensity orders of the derivative ions. Finally, the derivatives of the disaccharides with a galactose presented an intense ion peak at m/z 347, and those of oligosaccharides with 1–6 linkage to a galactose at terminal presented the ion at m/z 317. In the case of oligosaccharides with a fructose residue, characteristic ion of m/z 155 was produced. The conditions of stereoselective derivatizations and mass spectrometry were studied, in order to obtain a better reproducibility of the mass spectra.     

Tandem mass spectrometry of peptides. Relationship between translational energy loss and fragment ion mass

Incident ion energy E₁ and collision gas pressure have been adjusted so as to obtain a satisfactory tandem mass spectrum of the m/z 1882 ion formed from valme-gramicidin A (relative molecular mass 1881). Translational energy losses ΔE have been determined (at E_i = 14.8 keV) from the precise positions of a large number of fragment ion peaks in the spectrum. The variation in ΔE for different fragment ions is great and the magnitudes of ΔE are large (being commonly of the order of 10² eV). It is shown how very large energy losses ΔE can arise, if the parent ion decomposes to a small fragment ion which itself collides and decomposes further. Implications of the dependence of ΔE upon fragment ion mass for the scan laws of four-sector instruments are discussed briefly.     

Differentiation of lisinopril and its RSS diastereomer by liquid chromatography combined with collision‐induced dissociation mass spectrometry

A simple and sensitive liquid chromatography tandem multiple‐stage mass spectrometry (HPLC/MS/MS) method suitable for bulk lisinopril analysis was developed, by which lisinopril and its RSS isomer were separated and differentiated. In the collision‐induced dissociation (CID) mass spectra of the [M + H]⁺ ions, the abundance of the fragment ion of m/z 246 for lisinopril was about two times higher than the ion of m/z 245; however, the former fragment ion was noted to be a little lower than the latter for RSS isomer at all collision energies. In the CID mass spectra of the [M + Li]⁺ ion, the abundance of the rearrangement ion of m/z 315 for the RSS isomer was about three times higher than that for lisinopril. Furthermore, the difference was supported by the results of energy‐resolved mass spectrometry (ERMS) in the test range of collision energies. Similar differences were also observed between the CID mass spectra of lisinopril and RSS isomer methylester, which indicated that the RSS isomer could be rapidly characterized by the CID mass spectra of both the protonated and lithium adduct ion. Elemental compositions of all the ions were confirmed by Fourier Transform ion cyclotron resonance ESI mass spectrometry (FT‐ICR‐ESI/MS). In addition, theoretical computations were carried out to support the experimental results. Copyright © 2009 John Wiley & Sons, Ltd.     

Zur Lokalisierung funktioneller Gruppen in Steroiden mit Hilfe der Massenspektrometrie: XIII—Massenspektren von 3,7,17-Trihydroxyandrostanen und 7,17-Dihydroxyandrostan-3-onen

Androstanes with a trans connected A/B ring system and hydroxy groups in positions 3, 7 and 17 show in their mass spectra key ions of mass 99 and 178. The ion of mass 99 contains the carbon atoms of ring D, and the ion of mass 178 those of the A/B ring system and C-11. If the rings A and B are cis connected, the ion of mass 178 is produced with much lower abundance and the ion of mass 99 is almost absent. The α or β position of a hydroxy group in position 7 can be deduced from the spectra of corresponding trimethylsilyl derivatives: a fragment of [M ? 131] dominated by presence of a 7α-trimethylsilyl ether group and trans connection of the A/B ring system. Determination of the configuration of the hydroxy group in position 3 is very difficult. Analogous fragments are observed in the spectra of the corresponding 7, 17-dihydroxyandrostan-3-ones.     

Fourier Transform Ion Cyclotron Resonance Mass Resolution and Dynamic Range Limits Calculated by Computer Modeling of Ion Cloud Motion

Particle-in-Cell (PIC) ion trajectory calculations provide the most realistic simulation of Fourier transform ion cyclotron resonance (FT-ICR) experiments by efficient and accurate calculation of the forces acting on each ion in an ensemble (cloud), including Coulomb interactions (space charge), the electric field of the ICR trap electrodes, image charges on the trap electrodes, the magnetic field, and collisions with neutral gas molecules. It has been shown recently that ion cloud collective behavior is required to generate an FT-ICR signal and that two main phenomena influence mass resolution and dynamic range. The first is formation of an ellipsoidal ion cloud (termed “condensation”) at a critical ion number (density), which facilitates signal generation in an FT-ICR cell of arbitrary geometry because the condensed cloud behaves as a quasi-ion. The second phenomenon is peak coalescence. Ion resonances that are closely spaced in m/z coalesce into one resonance if the ion number (density) exceeds a threshold that depends on magnetic field strength, ion cyclotron radius, ion masses and mass difference, and ion initial spatial distribution. These two phenomena decrease dynamic range by rapid cloud dephasing at small ion density and by cloud coalescence at high ion density. Here, we use PIC simulations to quantitate the dependence of coalescence on each critical parameter. Transitions between independent and coalesced motion were observed in a series of the experiments that systematically varied ion number, magnetic field strength, ion radius, ion m/z, ion m/z difference, and ion initial spatial distribution (the present simulations begin from elliptically-shaped ion clouds with constant ion density distribution). Our simulations show that mass resolution is constant at a given magnetic field strength with increasing ion number until a critical value (N) is reached. N dependence on magnetic field strength, cyclotron radius, ion mass, and difference between ion masses was determined for two ion ensembles of different m/z, equal abundance, and equal cyclotron radius. We find that N and dynamic range depend quadratically on magnetic field strength in the range 1–21 Tesla. Dependences on cyclotron radius and Δm/z are linear. N depends on m/z as (m/z)^–2. Empirical expressions for mass resolution as a function of each of the experimental parameters are presented. Here, we provide the first exposition of the origin and extent of trade-off between FT-ICR MS dynamic range and mass resolution (defined not as line width, but as the separation between the most closely resolved masses).     

Mass spectrometry of 3-methoxy fatty acid methyl esters

Fatty acids with a hydroxyl moiety at the C-3 position are found widely in bacterial lipids, but only rarely in mammalian lipids. The mass spectra of the methyl ether derivative of these hydroxy acids exhibit an intense ion at m/e 75, rather than the rearrangement ion at m/e 74 more typical of fatty acid methyl esters. The mass spectrometric behavior of several 3-methoxy fatty acid methyl esters were studied, and the origin of the unique ion at m/e 75 was established using ¹⁸O and ²H labeled analogs and metastable ion transitions. this ion was shown to arise from the loss of ketene from the 3,4 cleavage ion at m/e 117.     

Mass analysis of overlapping ion kinetic energy peaks arising from charge separation in dications

A triple-sector instrument of reversed geometry, BEQQ, has been employed to resolve overlapping ion kinetic energy peaks arising from charge separation of metastable dications. Separation was achieved through mass resolution of the dication in the magnetic sector and of the singly charged product ion of greater mass in the quadrupole mass filter accompanied by energy resolution with the electric sector; the electric sector was scanned to cover the complete range of each charge separation peak. Two overlapping ion kinetic energy peaks arising from charge separation of the diphenylenimine dication and up to four overlapping ion kinetic peaks arising from charge separations of dications arising from benzene-1,3,5-d₃ have been resolved. The kinetic energy releases have been calculated in each case. Enhanced z-discrimination is observed with the final stage of mass analysis.     

Electron impact induced cyclization of ortho-substituted diphenylmethanes

Mass spectra of 2-hydroxydiphenylmethane and its derivatives are characterized in the upper mass region by an abundant ion m/z 165. Metastable ion measurements reveal that this ion is formed from the molecular ion of the parent compound by elimination of H₂O and hydrogen. A fluorenyl cation structure is proposed for this ion on the basis of identity of collision induced mass analyzed ion kinetic energy spectra of ion m/z 165 generated from 2-hydroxydiphenylmethane and from fluorene. Four different pathways of formation of a fluorenyl cation are discussed. The contribution of each of these to the genesis of fragment m/z 165 was monitored in a reversed geometry instrument by measuring the first fragmentation in the first field free region and the second fragmentation in the second field free region.     

Chemical ionization and electron impact mass spectra of alicyclic substituted 2-aryl-1,3-dithianes

The methane and isobutane chemical ionization mass spectra of alicyclic substituted 2-aryl-1,3-dithianes were examined by gas chromatography mass spectrometry. The protonated molecular ion was found to be of low abundance in the methane spectra, while a protonated cyclic sulfide cation (m/z 107) appeared as the base peak. A protonated molecular ion was the base peak when isobutane was used as the reagent gas. Electron impact mass spectra displayed weak molecular ions and were characterized by the m/z 106 fragment.     

Theory of peak coalescence in Fourier transform ion cyclotron resonance mass spectrometry

Peak coalescence, i.e. the merging of two close peaks in a Fourier transform ion cyclotron resonance (FTICR) mass spectrum at a high number of ions, plays an important role in various FTICR experiments. In order to describe the coalescence phenomenon we would like to propose a new theory of motion for ion clouds with close mass‐to‐charge ratios, driven by a uniform magnetic field and Coulomb interactions between the clouds. We describe the motion of the ion clouds in terms of their averaged drift motion in crossed magnetic and electric fields. The ion clouds are considered to be of constant size and their motion is studied in two dimensions. The theory deals with the first‐order approximation of the equations of motion in relation to dm/m, where dm is the mass difference and m is the mass of a single ion. The analysis was done for an arbitrary inter‐cloud interaction potential, which makes it possible to analyze finite‐size ion clouds of any shape. The final analytical expression for the condition of the onset of coalescence is found for the case of uniformly charged spheres. An algorithm for finding this condition for an arbitrary interaction potential is proposed. The critical number of ions for the peak coalescence to take place is shown to depend quadratically on the magnetic field strength and to be proportional to the cyclotron radius and inversely proportional to the ion masses. Copyright © 2009 John Wiley & Sons, Ltd.     

Mass spectra of phenoxyacetyl derivatives

The electron-impact-induced mass spectra of substituted N-phenylphenoxyacetamides are discussed. The structure of the rearrangement ion at m/z 108 is investigated and compared with the molecular ion of anisole by metastable ion and corrected collisionally activated dissociation spectra.     

Doubly charged ion mass spectra: VI—Amines

Doubly charged ion mass spectra of 22 amines (2–10 carbon atoms) were determined using an Hitachi RMU-7L double focusing mass spectrometer. Molecular ions were not observed in the spectra of aliphatic amines. The most intense product ion peaks in the spectra of lower molecular weight amines resulted from hydrogen elimination from the molecular ion; however, as amine molecular weight increased the largest peaks resulted from both hydrogen and heavy atom elimination from the molecular ion. Dominant ions in the doubly charged ion spectra of lower molecular weight aliphatic amines were from reactions of [C_nH₃N]²⁺ (n:=2, 3, 4) type ions. The spectra of higher molecular weight aliphatic amines spanned a wide mass range. Appearance energies for some of the more prominent ions were measured in the range from 25 to 49 eV. A geometry optimized quantum mechanical self-consistent field molecular orbital treatment was used to compute the energies and structural parameters of prominent ions in the doubly charged ion mass spectra.     

Electron capture and transfer dissociation: Peptide structure analysis at different ion internal energy levels

We decoupled electron-transfer dissociation (ETD) and collision-induced dissociation of charge-reduced species (CRCID) events to probe the lifetimes of intermediate radical species in ETD-based ion trap tandem mass spectrometry of peptides. Short-lived intermediates formed upon electron transfer require less energy for product ion formation and appear in regular ETD mass spectra, whereas long-lived intermediates require additional vibrational energy and yield product ions as a function of CRCID amplitude. The observed dependencies complement the results obtained by double-resonance electron-capture dissociation (ECD) Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) and ECD in a cryogenic ICR trap. Compared with ECD FT-ICR MS, ion trap MS offers lower precursor ion internal energy conditions, leading to more abundant charge-reduced radical intermediates and larger variation of product ion abundance as a function of vibrational post-activation amplitude. In many cases decoupled CRCID after ETD exhibits abundant radical c-type and even-electron z-type ions, in striking contrast to predominantly even-electron c-type and radical z-type ions in ECD FT-ICR MS and especially activated ion-ECD, thus providing a new insight into the fundamentals of ECD/ETD.