Mean field analysis of four liquid crystalline odd-even ester dimers

A mean field analysis is presented for four liquid crystalline ester dimers, Dn, containing the dimethylbenzalazine mesogen, alkanedioyloxy flexible spacers from 7 to 10 carbon atoms and acetate terminal groups. The conformations of the dimers, in the RIS approximation, were generated from the known crystallographic coordinates of D8 and D9. The energy of each conformer is split into an internal (conformation dependent) part and an external (orientation dependent) part. After proper averaging over all orientations and conformations, the orientation-conformation partition function is evaluated and, from that, the Helmholtz free energy. A qualitative agreement between calculated and observed thermodynamic properties is obtained. In fact, the theoretical analysis correctly predicts strong odd-even fluctuations for the mesogenic group order parameter, S, as well as for transition entropy, ΔS _NI, and transition temperature, T _NI. The distribution of conformers is similar for dimers having the same parity of the spacer. For even dimers, the calculated fraction of linear extended conformers in the nematic phase at the N-I transition is around 47%, whereas it is less than 3.6% for odd dimers.     

Understanding the dependence of the transitional properties of liquid crystal dimers on their molecular geometry

The characteristic feature of liquid crystal dimers, in which two mesogenic groups are linked by a flexible spacer, is often thought to be the strong odd-even effect exhibited by their transitional properties. That is, the nematic-isotropic transition temperature and the entropy of transition are large for dimers with an even number of groups in the spacer in comparison with those for neighbouring dimers with an odd number of groups. However, the magnitude of the odd-even effect along a homologous series of dimers is found to depend strongly on the nature of the link between the mesogenic group and the spacer. This dependence is thought to originate in the variation of the molecular geometry with the linking group, a view which is supported by detailed molecular field theory calculations involving all of the conformational states. Here we are concerned with developing a more transparent understanding of this geometrical effect using a simple model of the dimers in which all of the conformational states are replaced by just two, a linear and a bent conformer. The model has been found to exhibit a strong odd-even effect as well as a nematic-nematic transition when the bond angle is tetrahedral. We have used this model to explore the dependence of the transitional properties of liquid crystal dimers on their geometry by varying the bond angle of the bent conformer. The behaviour predicted by the model for the nematic-isotropic transition is found to be in qualitative agreement with experiment. In addition, the nematic-nematic transition is observed to exhibit a critical behaviour as the bond angle is increased. At the other extreme, when the bond angle is reduced to its limiting value of 90° there is a very strong first order transition between a discotic and a calamitic nematic.     

Structure and stability of (CuNO) isomers

Quantum-mechanical calculations have been performed on various isomers of the (CuNO)⁺ system. A ²Π ground state is found for the linear CuNO⁺ and CuON⁺ isomers and a ²A′ state for the bent CuNO⁺ and CuON⁺ isomers. Energy calculations indicate that the linear CuNO⁺ structure is the most stable, the bent CuNO⁺ and CuON⁺ and the linear CuON⁺ structures are at 0.86 eV, 0.99 eV and 1.04 eV above this respectively. In the CuNO⁺ → CuON⁺ interconversion between the linear isomers, three transition states are involved, whereas the bent CuNO⁺ isomer is found to be an intermediate species. The isomerization barriers, dissociation energies, equilibrium geometries and vibration frequencies are given for all isomers in their ground and first excited states.     

Mean field analysis of four liquid crystalline odd–even ester dimers

A mean field analysis is presented for four liquid crystalline ester dimers, Dn, containing the dimethylbenzalazine mesogen, alkanedioyloxy flexible spacers from 7 to 10 carbon atoms and acetate terminal groups. The conformations of the dimers, in the RIS approximation, were generated from the known crystallographic coordinates of D8 and D9. The energy of each conformer is split into an internal (conformation dependent) part and an external (orientation dependent) part. After proper averaging over all orientations and conformations, the orientation–conformation partition function is evaluated and, from that, the Helmholtz free energy. A qualitative agreement between calculated and observed thermodynamic properties is obtained. In fact, the theoretical analysis correctly predicts strong odd–even fluctuations for the mesogenic group order parameter, S, as well as for transition entropy, ΔS _NI, and transition temperature, T _NI. The distribution of conformers is similar for dimers having the same parity of the spacer. For even dimers, the calculated fraction of linear extended conformers in the nematic phase at the N–I transition is around 47%, whereas it is less than 3.6% for odd dimers.     

Reduced odd–even effects in liquid crystalline carbonate dimers: molecular field analysis

Four liquid crystalline carbonate dimers DCn containing the dimethylbenzalazine mesogen, bis(oxycarbonyloxy)alkane flexible spacers with three to six methylene units and acetate terminal groups were synthesised and their mesogenic behaviour investigated. As compared with the corresponding ester dimers a strong reduction of odd–even fluctuations of nematic–isotropic (N–I) transition entropy is observed. A theoretical analysis of the dimers within the rotational isomeric states (RIS) mean-field approach is also reported. A satisfying agreement between calculated and observed thermodynamic properties is obtained. In fact, the theoretical analysis correctly predicts a significant reduction of the odd–even fluctuations for the core order parameter S as well as for the nematic to isotropic transition entropy △S_NI . The calculated distributions of conformers also show reduced differences between even and odd members. In particular, for even dimers the calculated fraction of linear extended conformers in the nematic phase at the N–I transition is around 27%, which is far below that of the corresponding ester dimers (46%).     

Conformational analysis of dehydrodidemnin B (aplidine) by NMR spectroscopy and molecular mechanics/dynamics calculations.

Dehydrodidemnin B (DDB or aplidine), a potent antitumoral natural product currently in phase II clinical trials, exists as an approximately 1:1 mixture of two slowly interconverting conformations. These are sufficiently long-lived so as to allow their resolution by HPLC. NMR spectroscopy shows that this phenomenon is a consequence of restricted rotation about the Pyr-Pro(8) terminal amide bond of the molecule's side chain. The same technique also indicates that the overall three-dimensional structures of both the cis and trans isomers of DDB are similar despite the conformational change. Molecular dynamics simulations with different implicit and explicit solvent models show that the ensembles of three-dimensional structures produced are indeed similar for both the cis and trans isomers. These studies also show that hydrogen bonding patterns in both isomers are alike and that each one is stabilized by a hydrogen bond between the pyruvyl unit at the terminus of the molecule's side chain and the Thr(6) residue situated at the junction betwen the macrocycle and the molecule's side chain. Nevertheless, each conformational isomer forms this hydrogen bond using a different pyruvyl carbonyl group: CO(2) in the case of the cis isomer and CO(1) in the case of the trans isomer.     

A study of critical phenomena and dissipative nanostructures in self-organizing polymer systems

A research methodology based on scaling concepts is developed in detail for nonequilibrium polymer systems. Melt-crystallized linear high-density polyethylene is chosen as an example. In flexible-chain semicrystalline polymers, the transition from a solid isotropic or oriented state to a melt or from a solid isotropic state to an oriented state below the critical degree of polymerization occurs through necking at a nonzero external field on the combined line of first- and second-order phase transitions. A melt is a symmetric phase with a zero order parameter. Lamellar and fibrillar semicrystalline phases are phases with inherent order parameters that are periodic functions of one coordinate, and the neck draw ratio is another order parameter. At the critical degree of polymerization, all the phases are identical. In terms of the fluctuation theory of phase transitions and critical phenomena, the quantitative dependence of macroscopic properties on nanostructure parameters in this polymer material is revealed. The neck draw ratio and the draw ratio at break are macroscopic properties. The structure is characterized by the average thickness of amorphous layers. The square of the neck draw ratio is equal to the product of the square of the draw ratio at break and the probability of collision of chain ends. In turn, this probability is proportional to the average thickness of amorphous layers in an isotropic sample. The problems of dynamic scaling and entanglements are discussed.     

Conformational and Orientational Order of Molecules in Nematic Liquid Crystals

The statistical properties of the conformational and orientational distribution of molecules with internal rotation in the isotropic and nematic phases of liquid crystal (LC) are investigated in terms of molecular statistical theory. The paper discusses the effect of mutual correlation between the molecular conformational and orientational degrees of freedom on the conformational, orientational, and mixed order parameters of molecules in LC and on the nematic–isotropic liquid transition temperature. For these order parameters, the recurrent relation method is suggested and used to derive the partial functions of the conformational and orientational distributions of molecules in LC.     

Theoretical study on the [Si, C, N, O] potential energy surface

The structures, energetics, spectroscopies, and stabilities of the doublet [Si, C, N, O] radical are explored at the density functional theory and ab initio levels. Sixteen isomers are located, connected by 29 interconversion transition states. At the CCSD(T)/6-311+G(2df)//QCISD/6-311G(d)+ZPVE level, the lowest lying isomer is a linear SiNCO 1 (0.0 kcal/mol) mainly featuring a cumulene | . Si = N = C = O. The second and third low-lying isomers are bent OSiCN 2 (8.8) and bent OSiNC 3 (11.1), respectively. All the three low-lying isomers 1, 2, 3, and another high-lying species 5 (75.4) with a linear SiCNO structure are shown to have considerable kinetic stability and may be experimentally observable. The predicted results of isomers 1 and 2 are consistent with the previous mass spectrometry experiments. Moreover, the fourth low-lying species SiOCN 4 (23.9) with bent structure is expected to be observable in low-temperature environments. The bonding nature of the five isomers 1, 2, 3, 4, and 5 is analyzed. The calculated results are compared with those of the analogous molecules C(2)NO and Si(2)NO. Implications in interstellar space and N,O-doped SiC vaporization processes are also discussed.     

Modeling of the triglyceride-rich core in lipoprotein particles

Triglycerides are a major component of many important biological entities such as lipoproteins and lipid droplets. This work focuses on two common triglycerides, tripalmitin and triolein, which have been simulated through atomistic molecular dynamics at temperatures of 310 and 350 K for 300-700 ns. In these systems, both structural and dynamical properties have been characterized, paying particular attention to understanding the packing of triglyceride molecules and their molecular conformations. Additionally, we study the liquid-to-crystalline phase transition of tripalmitin through a temperature quench from the high-temperature isotropic liquid phase to 310 K, corresponding to a polymorphic, crystalline-like phase. The transition is characterized in detail through density, average molecular shape, and, in particular, the relevant order parameter describing the transition.     

Symmetric bent-shaped liquid crystal dimers showing transitions between optically uniaxial and biaxial smectic phases

We report the synthesis of a new homologous series of symmetric bent-shaped liquid crystal dimers bearing oxybiphenylcarboxylate mesogens linked by a pentamethylene spacer. The dimers were characterised by optical, thermal, X-ray diffraction and computational techniques. Shorter dimers showed an I-N-SmA-SmC phase sequence with strong first-order phase transitions. For the longer dimers, the unconventional uniaxial SmA phase present in shorter members collapsed. A 9:1 binary mixture of a bent dimer with a non-mesogenic dimer exhibited upon the SmA-SmC phase transition a maximum layer contraction of 1%.     

Experimental and density functional theoretical investigations of linkage isomerism in six-coordinate FeNO(6) iron porphyrins with axial nitrosyl and nitro ligands

A critical component of the biological activity of NO and nitrite involves their coordination to the iron center in heme proteins. Irradiation (330 < lambda < 500 nm) of the nitrosyl-nitro compound (TPP)Fe(NO)(NO(2)) (TPP = tetraphenylporphyrinato dianion) at 11 K results in changes in the IR spectrum associated with both nitro-to-nitrito and nitrosyl-to-isonitrosyl linkage isomerism. Only the nitro-to-nitrito linkage isomer is obtained at 200 K, indicating that the isonitrosyl linkage isomer is less stable than the nitrito linkage isomer. DFT calculations reveal two ground-state conformations of (porphine)Fe(NO)(NO(2)) that differ in the relative axial ligand orientations (i.e., GS parallel and GS perpendicular). In both conformations, the FeNO group is bent (156.4 degrees for GS parallel, 159.8 degrees for GS perpendicular) for this formally {FeNO}(6) compound. Three conformations of the nitrosyl-nitrito isomer (porphine)Fe(NO)(ONO) (MSa parallel, MSa perpendicular, and MSa(L)) and two conformations of the isonitrosyl-nitro isomer (porphine)Fe(ON)(NO(2)) (MSb parallel and MSb perpendicular) are identified, as are three conformations of the double-linkage isomer (porphine)Fe(ON)(ONO) (MSc parallel, MSc perpendicular, MSc(L)). Only 2 of the 10 optimized geometries contain near-linear FeNO (MSa(L)) and FeON (MSc(L)) bonds. The energies of the ground-state and isomeric structures increase in the order GS < MSa < MSb < MSc. Vibrational frequencies for all of the linkage isomers have been calculated, and the theoretical gas-phase absorption spectrum of (porphine)Fe(NO)(NO(2)) has been analyzed to obtain information on the electronic transitions responsible for the linkage isomerization. Comparison of the experimental and theoretical IR spectra does not provide evidence for the existence of a double linkage isomer of (TPP)Fe(NO)(NO(2)).     

Molecular order and thermodynamics of the solid-liquid transition in triglycerides via Raman spectroscopy

The conformational and thermodynamic behavior of five monoacid saturated triglycerides (TGs) before, during, and above the beta polymorph --> liquid phase transition was studied using Raman spectroscopy. The Raman ratio I[upsilon(s)(CH(2))]/I[upsilon(as)(CH(2))], used to identify intramolecular order about TG hydrocarbon chains, demonstrated that a single conformation, geometry and symmetry existed in liquid-state TGs. The Raman ratio I(1080)/I(1130), used to determine the intermolecular order/disorder about the hydrocarbon chains and relative trans/gauche content, remained constant for TGs in the crystalline state, but steadily increased as a function of temperature in the liquid state. Use of the van't Hoff relation and the spectroscopically-determined trans/gauche content indicated the presence of distinctive pre- and post-transition enthalpies/entropies indicating that the beta --> liquid phase transition is "soft", with possible intermediate conformations. The liquid-state ester carbonyl stretching region, which gave rise to a broad peak between 1780-1700 cm(-1), was decomposed into multiple components. It demonstrated solid-like character 2-3 degrees C above the TG beta-polymorph melting point, above which no further change in spectral character was observed. These results indicate that the solid-liquid transition in TGs is of the "soft" type with non-lamellar conformations likely present in the melt.     

Monte Carlo simulations of systems of rodlike molecules with semiflexible terminal groups

The results of Monte Carlo simulations of systems of rodlike molecules with semiflexible terminal groups are compared with those of systems with terminal groups at a fixed angle τ with respect to the rigid core and with those of a system containing the rigid cores alone in the same total volume. The nematic/isotropic transition temperature decreases with increasing flexibility or with increasing τ. For semiflexible groups, the transition is coupled with a conformational change favouring more extended conformations in the nematic phase. The results of the simulations are discussed in connection with those obtained for similar models in the recent literature and with the predictions of the Maier‐Saupe and Flory‐Ronca‐Irvine theories.     

Empirical atom—atom potential calculations on twoantagonists in histamene h2-receptors: metiamide and cimetidine

Empirical atom—atom potential calculations for nietiamide and cimetidine have been made in order to show the behaviour of the species in solution at 37°C. It was assumed that hydration should eliminate electrostatic interaction and consequently calculations made on molecules without charge. For both molecules very rigid gauche conformations are obtained with a population of more than 90%, which show a remarkable parallelism between the imidazole ring and thiourea (or cyanoguanidine) group planes. It seems that this conformation is necessary for the interaction with histamine H2-receptors. While metiamide shows a conformational equilibrium among configurational isomers, cimetidine shows practically only one configurational isomer (Z, E). This fact would apparently explain its greater biological specificity.     

Kerr effect in the isotropic melt of smectic polymer

Electric birefringence in the isotropic melt of a comb-like polyacrylate with mesogenic cyanobiphenyl side groups has been studied. A fraction with the degree of polymerization 200, which forms a smectic mesophase, has been considered. The change in the character of the temperature dependence of the Kerr constant has been revealed in the isotropic phase above the smectic–isotropic phase transition temperature. This effect is explained by the change in the character of short-range order in the isotropic–isotropic phase transition.     

Influence of polymorphism on charge transport properties in isomers of fluorenone-based liquid crystalline semiconductors

We measured the charge carrier mobilities for two isomers of fluorenone-based liquid crystalline organic semiconductors from their isotropic down to crystalline states through one or two mesophases. Improved charge transport properties of melt-processed crystalline films were obtained for the isomer exhibiting a highly ordered mesophase below its disordered smectic phase.     

Effect of pressure on the flow behavior of polybutene

The rheology of submicron thick polymer melt is examined under high normal pressure conditions by a recently developed photobleached‐fluorescence imaging velocimetry technique. In particular, the validity and limitation of Reynold equation solution, which suggests a linear through‐thickness velocity profile, is investigated. Polybutene (PB) is sheared between two surfaces in a point contact. The results presented in this work suggest the existence of a critical pressure below which the through‐thickness velocity profile is close to linear. At higher pressures however, the profile assumes a sigmoidal shape resembling partial plug flow. The departure of the sigmoidal profile from the linear profile increases with pressure, which is indicative of a second‐order phase/glass transition. The nature of the transition is confirmed independently by examining the pressure‐dependent dynamics of PB squeeze films. The critical pressure for flow profile transition varies with molecular weight, which is consistent with the pressure‐induced glass transition of polymer melt. © 2014 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2014 , 52, 708–715     

New insights in the electrocatalytic proton reduction and hydrogen oxidation by bioinspired catalysts: a DFT investigation

In this paper, we present a DFT study of the proton reduction mechanism catalyzed by the complex [Ni(P?(H)N?(H))?](2+), bioinspired from the hydrogenases. A detailed analysis of the reactive isomers is discussed together with the localizations of the transitions states and energy minima. The reactive catalytic species is a biprotonated Ni(0) complex that can show different conformations and that can be protonated on different sites. The energies of the different conformations and biprotonated species have been calculated and discussed. Energy barriers for two different reaction mechanisms have been identified in solvent and in gas phase. Frequency calculations have been performed to check the nature of the energy minima and for the calculations of entropic energetic terms and zero point energies. We show that only one conformation is mostly reactive. All the others species are nonreactive in their original form, and they have to pass through conformational barriers in order to transform in the reactive species.     

Nematic-isotropic pretransitional behaviour in dimers with odd and even spacer lengths

Magnetic field induced optical birefringence measurements in the isotropic phase are reported for two members of a series of phenyl benzoate dimers: one having an odd number of methylene units in the spacer and one having an even number. The discontinuity at the nematic-isotropic transition, as determined by the difference between the first order phase transition temperature TNI and the supercooling limit of the isotropic phase T*, is approximately 8 ± 3 times larger for the even species than for the odd. In addition, the product of the Cotton-Mouton coefficient dΔn/dH² and T-T* is the same for both materials. In terms of both steric and molecular field theories, the results indicate that the orientations of the terminal mesogenic groups are essentially uncorrected in the isotropic phase.