Molecular Dynamics Investigation of Differences in Melting Behaviors of Cu57 and Cu58 Clusters

Within the framework of the embedded-atom method, we performed molecular-dynamics calculations to investigate the structural transformation during melting of two copper clus- ters containing 57 and 58 atoms. The simulation results reveal how their different structural changes can strongly influence internal energy and radial distribution functions. The local structural patterns of different regions during the temperature increase, determined by atom density profiles, are identified for the melting of each cluster. The simulations show sensi- tivities of the structural changes for these two small size clusters with different structures.     

小尺寸金属团簇熔化过程的分子动力学模拟

运用分子动力学方法模拟了小尺寸金属团簇的熔化过程, 原子之间的作用采用嵌入原子法(EAM)模型, 计算了均方根键长涨落δ随温度的变化, 以及升温过程中团簇热容的变化. 包含55、56个原子的面心立方(FCC)结构Au团簇的熔化过程是基本相同的. 而同样结构和数目Cu团簇的熔化过程却呈现出不同的趋势. Cu55、Cu56在模拟过程中都出现了FCC结构到二十面体结构的转变. 但由于表面多出了一个原子, Cu56的热容曲线比Cu55多了一个峰, 体系出现了预熔化现象. 这表明小尺寸团簇的固液转变的过程与团簇的原子类型、几何结构和原子数目密切相关.     

采用优化的DFTB参数对铜(111)表面碳二聚化的分子动力学研究

针对铜表面化学反应,我们发展了一套铜-碳体系的密度泛函紧束缚(DFTB)参数。测试结果表明这套参数可以很好的描述吸附铜或碳原子前后铜表面的几何结构和能量。基于这套参数,我们对Cu(111)表面的碳二聚化过程进行了分子模拟研究。即使在高温下,直接的分子动力学模拟也很难观察到碳二聚体的形成。这是因为高温下铜表面显著的结构弛豫一定程度上阻止了二聚化。为了研究高温下铜表面碳二聚化的机理,我们进行了赝动力学模拟。发现在二聚化的过程中,碳原子形成C-Cu-C桥状结构以后,会绕中间Cu原子转动,最后形成碳二聚体。1300 K下碳二聚化的自由能垒约0.9 eV。     

Dynamics Studies on Molecular Diffusion in Zeolites

1 INTRODUCTION Zeolites have attracted much attention in both scientific and industrial areas for their special characteristics and multiple uses. Zeolites are composed of TO4 (T = Si, Al, Ga, P, etc.) tetrahedra which are connected with each other by sharing oxygen atoms to produce a complex and repetitive three-dimensional atom network with regular molecular dimension cavities joined by channels. Shape selectivity is the most important property of zeolites. Combined with the possib…     

Atomistic Simulations of Dopamine Diffusion Dynamics on a Pristine Graphene Surface**

Carbon microelectrodes enable in vivo detection of neurotransmitters, and new electrodes aim to optimize the carbon surface. However, atomistic detail on the diffusion and orientation of neurotransmitters near these surfaces is lacking. Here, we employ molecular dynamics simulations to investigate the surface diffusion of dopamine (DA), its oxidation product dopamine-o-quinone (DOQ), and their protonated forms on the pristine basal plane of flat graphene. We find that all DA species rapidly adsorb to the surface and remain adsorbed, even without a holding potential or graphene surface defects. We also find that the diffusivities of the adsorbed and the fully solvated DA are similar and that the protonated species diffuse more slowly on the surface than their corresponding neutral forms, while the oxidized species diffuse more rapidly. Structurally, we find that the underlying graphene lattice has little influence over the molecular adsorbate's lateral position, and the vertical placement of the amine group on dopamine is highly dependent upon its charge. Finally, we find that solvation has a large effect on surface diffusivities. These first results from molecular dynamics simulations of dopamine at the aqueous-graphene interface show that dopamine diffuses rapidly on the surface, even without an applied potential, and provide a basis for future simulations of neurotransmitter structure and dynamics on advanced carbon materials electrodes.     

纳米结构表面浸润性质的分子动力学研究

采用分子动力学方法研究了氩纳米液滴在铂金属及其模型固体表面的浸润现象,获得了液滴在平滑表面和三角纳米结构阵列表面的接触角和展布特性.研究表明,液滴与壁面的势能作用较强时,液滴与纳米结构表面为均匀浸润,但是由于迟滞效应,接触角受表面纳米结构的影响不明显;势能作用较弱时,纳米结构间隙中存在类似蒸汽的低密度相,液滴与纳米结构表面为非均匀浸润,接触角受纳米结构的影响而增大;表面纳米结构可以使表面具有超疏水性.     

原子H在Cu(100)(111)(110)上的吸附扩散研究

采用5-MP势方法,对原子氢在金属Cu的3个低指数面上的吸附特性,如吸附几何、吸附能、振动频率等以及吸附扩散势能面结构进行了比较系统的研究,计算结果显示低温低覆盖条件下,氢原子在Cu(110)表面上只存在赝式三重位和长桥位吸附态,没有短桥位吸附态,并且获得了实验和理论的支持.     

超临界CO2中甲醇和乙醇无限稀释扩散系数的分子动力学模拟与实验测定

采用分子动力学模拟(MD)方法对甲醇和乙醇在超临界二氧化碳中的无限稀释扩散系数进行了模拟计算, 并应用泰勒分散理论, 采用超临界色谱仪对模拟结果进行了实验验证. 模拟计算值与实验值较吻合, 且变化规律基本一致, 表明采用这种新方法可以准确有效地预测超临界体系的扩散性质, 能够方便地应用于工程设计.     

分子动力学模拟苯和萘在超临界二氧化碳中的无限稀释扩散系数

采用球型模型和点位-点位模型对超临界二氧化碳的自扩散系数及苯或萘在超临界二氧化碳中的无限稀释扩散系数进行了分子动力学模拟。结果表明,球型模型及点位-点位模型均可较准确地预测二氧化碳的自扩散系数,球型模型因形式简单,准确度相对较差;点位-点位模型准确度虽高,但需较长的模拟机时。两种位能模型所获得的准确度相当,但点位-点位模型可以更精细地反映体系的微观结构。     

利用基于直接动力学的轨线面跳跃方法处理非绝热过程

势能面交叉引起的非绝热过程广泛存在于光化学和光物理中。对这一过程进行描述是理论化学的重要挑战之一。非绝热过程涉及原子核与电子之间的耦合运动,因此量子化学的基本假设之一"玻恩-奥本海默"近似被打破,所以对其进行描述需要发展新的动力学理论方法。在这些方法中,Tully发展的最少轨线面跳跃方法凭借易于程序化、便于计算等优点已经发展成为处理非绝热问题的主要动力学方法之一。其中原子核以经典的方式在单一势能面上进行演化,电子以量子的方式沿着同一轨线进行演化。在整个演化过程中,非绝热跃迁通过轨线在不同势能面间的跃迁来描述,其中跳跃发生的几率与电子的演化有关。如果将该方法与从头算直接动力学相结合,可以在全原子水平上研究实际分子体系的非绝热动力学,给出其激发态寿命、非绝热动力学中分子的主要运动方式、反应通道以及分支比等重要信息。本文旨在讨论最少面跳跃直接动力学方法研究非绝热问题的一些进展,包括动力学基本理论,特别关注将最少面跳跃方法和直接动力学结合的数值实现细节,同时讨论该方法在研究实际体系当中的一些应用,并对轨线面跳跃方法下一步发展的一些方向进行合理的展望。     

表面扩散的Monte Carlo初探

利用ＭｏｎｔｅＣａｒｌｏ方法模拟了理想表面和分形表面上的扩散过程；通过模拟可以发现，表面扩散系数不仅与表面浓度有关，而且还与扩散的时间、表面的几何形貌等有关。在表面覆盖度比较高时，表面扩散系数有一极大值。与理想表面相比，分形表面会使扩散系数减小。     

Sustained Hydrogen Spillover on Pt/Cu(111) Single-Atom Alloy: Dynamic Insights into Gas-Induced Chemical Processes

Hydrogen spillover, involving the surface migration of dissociated hydrogen atoms from active metal sites to the relatively inert catalyst support, plays a crucial role in hydrogen-involved catalytic processes. However, a comprehensive understanding of how H atoms are driven to spill over from active sites onto the catalyst support is still lacking. Here, we examine the atomic-scale perspective of the H spillover process on a Pt/Cu(111) single atom alloy surface using machine-learning accelerated molecular dynamics calculations based on density functional theory. Our results show that when an impinging H₂ dissociates at an active Pt site, the Pt atom undergoes deactivation due to the dissociated hydrogen atoms that attach to it. Interestingly, collisions between H₂ and sticking H atoms facilitate H spillover onto the host Cu, leading to the reactivation of the Pt atom and the realization of a continuous H spillover process. This work underscores the importance of the interaction between gas molecules and adsorbates as a driving force in elucidating chemical processes under a gaseous atmosphere, which has so far been underappreciated in thermodynamic studies.     

Monte Carlo模拟表面上吸附态物种的迁移对反应行为的影响

用MonteCarlo方法研究了非均相催化剂表面吸附态氢原子的迁移对催化反应活性的影响,模拟结果表明,吸附态氢原子扩散很慢时,表面活性位很快被氢原子饱和,转换频率TOF增大到一定程度时很快下降;而当表面吸附态氢原子的扩散速率达到足够大的程度时,TOF将不再受氢原子扩散的影响.     

氧化锡表面的原子簇模型计算

Cluster models of SnO2(110) face and oxygen vacancies and oxygen adsorption on its surface have been calculated by EHMO method. The results show that a tin atom with a coordination number of four is the adsorption center, because the total energy of cluster model becomes lower when an oxygen atom adsorpts on the tin atom with a coordination number of four. The tin atom with this coordination number gains and loses electrons more easily than tin atoms with a coordination number of five. All tin atoms in the cluster of SnO2(110) face are Sn4+.     

金属-有机配合物分子在Au(111)表面的吸附行为

用STM对含氧桥的金属-有机配合物[Cu₂(μ-O)(dptap)4(NO₃)₂]分子在Au(111)表面的吸附行为进行了研究. STM结果表明, 该分子同时存在非解离吸附和解离吸附, 大部分分子在Au(111)面形成有规则的排列, 少量分子发生解离吸附, 并形成(√3×√3)R30°Cu原子吸附结构. 探讨了两种吸附现象共存的起因.     

Surface chemistry of isopropoxy tetramethyl dioxaborolane on Cu(111)

The surface chemistry of isopropoxy tetramethyl dioxaborolane (ITDB), tetramethyl dioxaborolane (TDB), and 2-propanol is studied on a clean Cu(111) single crystal using temperature-programmed desorption (TPD). 2-Propanol is found to have two competing reactions on the copper surface. Dehydration results in water and propene formation, and dehydrogenation results in the formation of acetone and hydrogen. ITDB directly adsorbed on the surface reacts completely and does not molecularly desorb. TDB and 2-propanol decompose desorbing mainly 2,3-dimethyl 2-butene and acetone, respectively. Both of those products desorb above room temperature and are present in TPDs of ITDB. An additional acetone desorption peak was observed for ITDB at higher temperatures than acetone desorption from 2-propanol. This higher temperature peak at ～391 K was attributed to two acetone molecules forming from the tetramethyl end group resulting from a stronger bound surface species in ITDB compared to TDB despite their identical end groups. The copper surface seems to be reactive enough toward ITDB at room temperature that a potential boron-containing tribofilm could be produced for copper-copper sliding contacts. Despite their similarities, ITDB and TDB have different surface species present at room temperature, so their tribological properties will be investigated in the future.     

Conformation Controls Mobility: 2H-Tetranaphthylporphyrins on Cu(111)

The adsorption behavior and the mobility of 2H-Tetranaphthylporphyrin (2HTNP) on Cu(111) was investigated by scanning tunneling microscopy (STM) at room temperature (RT). The molecules adsorb, like the structurally related 2HTPP, in the “inverted” structure with the naphthyl plane restricted to an orientation parallel to the Cu surface. The orientation of the four naphthyl groups yields altogether 16 possible conformations. Due to the existence of rotamer pairs, 10 different appearances are expected on the surface, and all of them are identified by STM at RT. Most interestingly, the orientation of the naphthyl groups significantly influences the diffusion behavior of the molecules on Cu(111). We identify three different groups of conformers, which are either immobile, medium or fast diffusing at RT. The mobility seems to decrease with increasing size of the footprint of the conformers on the surface.     

平面铂电极上吸附氢原子表面扩散系数的测定

This Paper describes an experimental method that established a local Pt/Nafion interface on the Platinum Plane, so that the boundary conditions and the initial condition of the (diffusion equation about the diffusion of adsorbed hydrogen atom the platinum plane can be controlled. The average diffusion coefficient of underpotential deposition of hydrogen on a surface of platinum was obained for the first time and D=1.50 ×10-4cm2•s-1.The accuracy of the datum was discussed.     

一氧化氮在Cu_3Pt(111)表面的吸附行为

运用密度泛函理论中广义梯度近似(GGA)的PW91方法,结合周期性平板模型,探讨了NO分子在Cu3Pt(111)表面上不同吸附位的吸附行为.结果表明:NO分子以N端朝下方式吸附在top-Pt以及hcp1和fcc2位(分别为表面Cu2Pt和Cu3簇)的吸附模式最稳定,吸附能分别为101.8、124.5和118.1kJ·mol-1.对于hcp1和fcc2位的吸附,NO中的N原子分别与底物的Cu2Pt和Cu3簇成键.吸附前后的电荷布居、态密度和振动频率的分析结果表明,净电子从底物合金表面转移到NO,N—O键伸长,频率发生红移.合金Cu3Pt和纯贵金属Pt对NO的吸附性质相似.     

隧道结电场辅助下叔丁胺分子在Cu(111)表面跳跃(英文)

采用扫描隧道显微镜(STM)于78 K研究了单个叔丁胺分子在Cu(111)表面的横向跃迁现象.研究发现叔丁胺分子的跳跃几率随隧道电流的增加而线性增加,这表明该过程是单电子激发过程;在不同极性的隧道结电场作用下,叔丁基胺分子跳跃行为发生的几率不同,这种现象可以用电场辅助的扩散过程解释.在不同极性电场作用下叔丁胺分子在Cu(111)表面的吸附能和扩散势垒不同,从而表现出不同的跳跃几率.