Protonation of water clusters induced by hydroperoxyl radical surface adsorption

We have investigated the HO(2) adsorption and acid dissociation process on the surface of (H(2)O)(20) and (H(2)O)(21) clusters by using quantum-chemistry calculations. Our results show that the radical forms a stable hydrogen-bond complex on the cluster. The HO(2) acid dissociation is more favorable in the case of the (H(2)O)(21) cluster, for which the inner water molecule plays a crucial role. In fact, acid dissociation of HO(2) is found to occur in two steps. The first step involves H(2) O autoionization in the cluster, and the second one involves the proton transfer from the HO(2) radical to the hydroxide anion. The presence of the HO(2) radicals on the surface of the cluster facilitates water autoionization in the cluster.     

Radicals produced by gamma-irradiation of hyperquenched glassy water containing 2'-deoxyguanosine-5'-monophosphate

Hyperquenched glassy water (HGW) has been suggested as the best model for liquid water, to be used in low-temperature studies of indirect radiation effects on dissolved biomolecules (Bednarek et al. J. Am. Chem. Soc. 1996, 118, 9387). In the present work, these effects are examined by X-band electron spin resonance spectroscopy (ESR) in gamma-irradiated HGW matrix containing 2'-deoxyguanosine-5'-monophosphate. Analysis of the complex ESR spectra indicates that, in addition to OH(*) and HO2(*) radicals generated by water radiolysis, three species are trapped at 77 K:(i) G(C8)H(*) radical, the H-adduct to the double bond at C8; (ii) G(- *) radical anion, the product of electron scavenging by the aromatic ring of the base; and (iii) dR(-H)(*) radicals formed by H abstraction from the sugar moiety, predominantly at the C'5 position. We discuss the yields of the radicals, their thermal stability and transformations, as well as the effect of photobleaching. This study confirms our earlier suggestion that in HGW the H atom addition/abstraction products are created at 77 K in competition with HO2(*) radicals, in a concerted process following ionization of water molecule at L-type defect sites of the H-bonded matrix. The lack of OH(*) reactivity toward the solute suggests that the H-bonded structure in HGW is much more effective in recombining OH(*) radicals than that of aqueous glasses obtained from highly concentrated electrolyte solutions. Furthermore, complementary experiments for the neat matrix have provided evidence that HO2(*) radicals are not the product of H atom reaction with molecular oxygen, possibly generated by ultrasounds used in the process of sample preparation.     

Exploration of the potential energy surfaces, prediction of atmospheric concentrations, and prediction of vibrational spectra for the HO2...(H2O)n (n = 1-2) hydrogen bonded complexes

The hydroperoxy radical (HO2) plays a critical role in Earth's atmospheric chemistry as a component of many important reactions. The self-reaction of hydroperoxy radicals in the gas phase is strongly affected by the presence of water vapor. In this work, we explore the potential energy surfaces of hydroperoxy radicals hydrogen bonded to one or two water molecules, and predict atmospheric concentrations and vibrational spectra of these complexes. We predict that when the HO2 concentration is on the order of 10(8) molecules x cm(-3) at 298 K, that the number of HO2...H2O complexes is on the order of 10(7) molecules x cm(-3) and the number of HO2...(H2O)2 complexes is on the order of 10(6) molecules x cm(-3). Using the computed abundance of HO2...H2O, we predict that, at 298 K, the bimolecular rate constant for HO2...H2O + HO2 is about 10 times that for HO2 + HO2.     

The origin of sticking between a hydroperoxy radical and a water surface

An understanding of how gas-phase radicals in the earth's atmosphere become incorporated with liquid-phase cloud droplets is a vital part of understanding the chemical budgeting of these highly reactive species. Recent studies have suggested that hydroperoxy radicals (HO2) have an affinity for binding to a water surface. The calculations presented here are used to extricate the components of the attractive contribution of the intermolecular interactions that are responsible for the unusually strong binding between the hydroperoxy radical and a water surface. The analyses reveal that, for the binding of an HO2 radical to a water surface, the two water molecules nearest the radical are the most relevant to the bonding and the addition of other water molecules has little affect on the bonding between the radical and the two nearest waters. These results suggest that, once the HO2 is bound to the surface, the binding is a relatively local phenomenon. Identifying the properties responsible for the strong attraction is an important result that can be used to identify other radical systems whose chemistry might be impacted by the presence of water.     

Effect of water density on methanol oxidation kinetics in supercritical water

We oxidized methanol in supercritical water at 500 degrees C to explore the influence of the water concentration (or density) on the kinetics. The rate increased as the water concentration increased from 1.8 to 5.7 mol/L. This effect of water density on the kinetics observed experimentally was quantitatively reproduced by a previously validated mechanism-based, detailed chemical kinetics model. In this model, reactions of OH radicals with methanol were the fastest methanol removal steps. The rates of these removal steps increased with water density at 500 degrees C because the OH radical concentration increased. The OH radical concentration increased with density because the rates of the steps H + H2O = OH + H2 and CH3 + H2O = OH + CH4, which produce OH radicals, increased. Thus, the main role of water in accelerating methanol oxidation kinetics at 500 degrees C is as a hydrogen donor to a radical (R) in steps such as R + H2O = OH + RH. This system provides a striking example of SCW being involved on the molecular level in the free-radical oxidation as a reactant in elementary steps.     

A calibration method for measurement of small alkyl organic peroxy radicals by chemical amplifier.

A new method is proposed to determine the calibration factor (CF) of methyl and ethyl peroxy radicals in a chemical amplifier. The radical source comes from the reactions of excess methane and ethane, respectively, with known concentrations of OH radicals generated by the photolysis of water vapor at 184.9 nm in air in a flow tube. This yields a mixed radical source with equal amounts of HO2 and RO2 (R = CH3, C2H5). The CF for RO2 can be derived from the CF for HO2 and an average CF for the mixed radicals. The reliability of the method was evaluated by comparing the CF ratios of RO2 to HO2 obtained from both the experiments and theoretical calculations.     

A systematic computational study of the reactions of HO2 with RO2: the HO2 + C2H5O2 reaction

The reaction of HO2 with C2H5O2 has been studied using the density functional theory (B3LYP) and the coupled-cluster theory [CCSD(T)]. The reaction proceeds on the triplet potential energy surface via hydrogen abstraction to form ethyl hydroperoxide and oxygen. On the singlet potential energy surface, the addition-elimination mechanism is revealed. Variational transition state theory is used to calculate the temperature-dependent rate constants in the range 200-1000 K. At low temperatures (e.g., below 300 K), the reaction takes place predominantly on the triplet surface. The calculated low-temperature rate constants are in good agreement with the experimental data. As the temperature increases, the singlet reaction mechanism plays more and more important role, with the formation of OH radical predominantly. The isotope effect of the reaction (DO2 + C2D5O2 vs HO2 + C2H5O2) is negligible. In addition, the triplet abstraction energetic routes for the reactions of HO2 with 11 alkylperoxy radicals (CnHmO2) are studied. It is shown that the room-temperature rate constants have good linear correlation with the activation energies for the hydrogen abstraction.     

Infrared measurements and calculations on H2O.HO

We have measured the infrared spectrum of H2O.HO in argon matrices at 11.5 +/- 0.5 K. We have also calculated the vibrational frequencies and intensities of the H2O.HO complex. As a result of these measurements and calculations, we have assigned a previously unassigned absorption band at 3442.1 cm-1 to the OH stretch in the radical complexed to the water molecule. This absorption originates from a complex that is situated in a different site within the argon matrix to those absorptions already assigned to this vibration at 3452.2 and 3428.0 cm-1. We observe a decrease in intensity of the OH radical stretching vibration of the H2O.HO complex upon isotopic substitution of D for H that agrees well with our calculations.     

Multichannel RRKM-TST and CVT rate constant calculations for reactions of CH2OH or CH3O with HO2

The kinetics and mechanism of the gas-phase reactions between hydroxy methyl radical (CH(2)OH) or methoxy radical (CH(3)O) with hydroproxy radical (HO(2)) have been theoretically investigated on their lowest singlet and triplet surfaces. Our investigations indicate the presence of one deep potential well on the singlet surface of each of these systems that play crucial roles on their kinetics. We have shown that the major products of CH(2)OH + HO(2) system are HCOOH, H(2)O, H(2)O(2), and CH(2)O and for CH(3)O + HO(2) system are CH(3)OH and O(2). Multichannel RRKM-TST calculations have been carried out to calculate the individual rate constants for those channels proceed through the formation of activated adducts on the singlet surfaces. The rate constants for direct hydrogen abstraction reactions on the singlet and triplet surfaces were calculated by means of direct-dynamics canonical variational transition-state theory with small curvature approximation for the tunneling.     

Kinetics of the reaction C2H5 + HO2 by time-resolved mass spectrometry

The overall rate constant for the radical-radical reaction C2H5 + HO2 --> products has been determined at room temperature by means of time-resolved mass spectrometry using a laser photolysis/flow reactor combination. Excimer laser photolysis of gas mixtures containing ethane, hydrogen peroxide, and oxalyl chloride was employed to generate controlled concentrations of C2H5 and HO2 radicals by the fast H abstraction reactions of the primary radicals Cl and OH with C2H6 and H2O2, respectively. By careful adjustments of the radical precursor concentrations, the title reaction could be measured under almost pseudo-first-order conditions with the concentration of HO2 in large excess over that of C2H5. From detailed numerical simulations of the measured concentration-time profiles of C2H5 and HO2, the overall rate constant for the reaction was found to be k1(293 K) = (3.1 +/- 1.0) x 10(13) cm3 mol(-1) s(-1). C2H5O could be confirmed as a direct reaction product.     

Investigation of the radical product channel of the CH3COO2 + HO2 reaction in the gas phase

The reaction of CH(3)C(O)O(2) with HO(2) has been investigated at 296 K and 700 Torr using long path FTIR spectroscopy, during photolysis of Cl(2)/CH(3)CHO/CH(3)OH/air mixtures. The branching ratio for the reaction channel forming CH(3)C(O)O, OH and O(2) (reaction ) has been determined from experiments in which OH radicals were scavenged by addition of benzene to the system, with subsequent formation of phenol used as the primary diagnostic for OH radical formation. The dependence of the phenol yield on benzene concentration was found to be consistent with its formation from the OH-initiated oxidation of benzene, thereby confirming the presence of OH radicals in the system. The dependence of the phenol yield on the initial peroxy radical precursor reagent concentration ratio, [CH(3)OH](0)/[CH(3)CHO](0), is consistent with OH formation resulting mainly from the reaction of CH(3)C(O)O(2) with HO(2) in the early stages of the experiments, such that the limiting yield of phenol at high benzene concentrations is well-correlated with that of CH(3)C(O)OOH, a well-established product of the CH(3)C(O)O(2) + HO(2) reaction (via channel (3a)). However, a delayed source of phenol was also identified, which is attributed mainly to an analogous OH-forming channel of the reaction of HO(2) with HOCH(2)O(2) (reaction ), formed from the reaction of HO(2) with product HCHO. This was investigated in additional series of experiments in which Cl(2)/CH(3)OH/benzene/air and Cl(2)/HCHO/benzene/air mixtures were photolysed. The various reaction systems were fully characterised by simulations using a detailed chemical mechanism. This allowed the following branching ratios to be determined: CH(3)C(O)O(2) + HO(2)--> CH(3)C(O)OOH + O(2), k(3a)/k(3) = 0.38 +/- 0.13; --> CH(3)C(O)OH + O(3), k(3b)/k(3) = 0.12 +/- 0.04; --> CH(3)C(O)O + OH + O(2), k(3c)/k(3) = 0.43 +/- 0.10: HOCH(2)O(2) + HO(2)--> HCOOH + H(2)O + O(2), k(17b)/k(17) = 0.30 +/- 0.06; --> HOCH(2)O + OH + O(2), k(17c)/k(17) = 0.20 +/- 0.05. The results therefore provide strong evidence for significant participation of the radical-forming channels of these reactions, with the branching ratio for the title reaction being in good agreement with the value reported in one previous study. As part of this work, the kinetics of the reaction of Cl atoms with phenol (reaction (14)) have also been investigated. The rate coefficient was determined relative to the rate coefficient for the reaction of Cl with CH(3)OH, during the photolysis of mixtures of Cl(2), phenol and CH(3)OH, in either N(2) or air at 296 K and 760 Torr. A value of k(14) = (1.92 +/- 0.17) x 10(-10) cm(3) molecule(-1) s(-1) was determined from the experiments in N(2), in agreement with the literature. In air, the apparent rate coefficient was about a factor of two lower, which is interpreted in terms of regeneration of phenol from the product phenoxy radical, C(6)H(5)O, possibly via its reaction with HO(2).     

The OH radical-H2O molecular interaction potential

The OH radical is one of the most important oxidants in the atmosphere due to its high reactivity. The study of hydrogen-bonded complexes of OH with the water molecules is a topic of significant current interest. In this work, we present the development of a new analytical functional form for the interaction potential between the rigid OH radical and H(2)O molecules. To do this we fit a selected functional form to a set of high level ab initio data. Since there is a low-lying excited state for the H(2)O.OH complex, the impact of the excited state on the chemical behavior of the OH radical can be very important. We perform a potential energy surface scan using the CCSD(T)/aug-cc-pVTZ level of electronic structure theory for both excited and ground states. To model the physics of the unpaired electron in the OH radical, we develop a tensor polarizability generalization of the Thole-type all-atom polarizable rigid potential for the OH radical, which effectively describes the interaction of OH with H(2)O for both ground and excited states. The stationary points of (H(2)O)(n)OH clusters were identified as a benchmark of the potential.     

Can an OH radical form a strong hydrogen bond? A theoretical comparison with H2O

In this study, we apply UCCSD/6-31++G** to investigate the ability of an OH radical acting as a hydrogen bond acceptor with HF, HCl, and H(2)O (HO...HX; X=F, Cl, OH) or as a hydrogen bond donor with H(2)O and H(2)S (OH...XH(2); X=O and S). We also replace OH with H(2)O and make a fair comparison between them. Additionally, the counterpoise method (CP) has been used to examine the effect of basis set superposition error (BSSE). Our results reveal that OH is a stronger hydrogen bond donor but a weaker hydrogen bond acceptor than H(2)O. This conclusion is independent of the correction for BSSE and can be rationalized by the NBO analysis, the results of which indicate that OH radical has a lower n(O) and sigma*(O-H) in energy than that of H(2)O.     

A mechanistic study of the 2-thienylmethyl + HO2 radical recombination reaction

Radical recombination reactions are important in the combustion of fuel oils. Shale oil contains alkylated heteroaromatic species, the simplest example of which is the 2-thienylmethyl radical. The ab initio potential energy surface for the reaction of the 2-thienylmethyl radical with the HO(2) radical has been examined. Seventeen product channels corresponding to either addition/elimination or direct hydrogen abstraction have been characterized for the first time. Direct hydrogen abstract from HO(2) proceeds via a weakly bound van der Waals complex, which leads to 2-methylthiophene, 2-methylene-2,3-dihydrothiophene, or 2-methylene-2,5-dihydrothiophene depending upon the 2-thienylmethyl radical reaction site. The addition pathway for the two radical reactants is barrierless with the formation of three adducts, as distinguished by HO(2) reaction at three different sites on the 2-thienylmethyl radical. The addition is exothermic by 37-55 kcal mol(-1) relative to the entrance channel, and these excess energies are available to promote further decomposition or rearrangement of the adducts, leading to nascent products such as H, OH, H(2)O, and CH(2)O. The reaction surfaces are characterized by relatively low barriers (most lower than 10 kcal mol(-1)). Upon the basis of a careful analysis of the overall barrier heights and reaction exothermicities, the formations of O(2), OH, and H(2)O are likely to be important pathways in the radical recombination reactions of 2-thienylmethyl + HO(2).     

Investigation of the radical product channel of the CH(3)C(O)CH(2)O(2) + HO(2) reaction in the gas phase

The reaction of CH(3)C(O)CH(2)O(2) with HO(2) has been studied at 296 K and 700 Torr using long path FTIR spectroscopy, during photolysis of Cl(2)/acetone/methanol/air mixtures. The branching ratio for the reaction channel forming CH(3)C(O)CH(2)O, OH and O(2) () was investigated in experiments in which OH radicals were scavenged by addition of benzene to the system, with subsequent formation of phenol used as the primary diagnostic for OH radical formation. The observed prompt formation of phenol under conditions when CH(3)C(O)CH(2)O(2) reacts mainly with HO(2) indicates that this reaction proceeds partially by channel , which forms OH both directly and indirectly, by virtue of secondary generation of CH(3)C(O)O(2) (from CH(3)C(O)CH(2)O) and its reaction with HO(2) (). The secondary generation of OH radicals was confirmed by the observed formation of CH(3)C(O)OOH, a well-established product of the CH(3)C(O)O(2) + HO(2) reaction (via channel ). A number of delayed sources of OH also contribute to the observed phenol formation, such that full characterisation of the system required simulations using a detailed chemical mechanism. The dependence of the phenol and CH(3)C(O)OOH yields on the initial peroxy radical precursor reagent concentration ratio, [methanol](0)/[acetone](0), were well described by the mechanism, consistent with a small but significant fraction of the reaction of CH(3)C(O)CH(2)O(2) with HO(2) proceeding via channel . This allowed a branching ratio of k(3b)/k(3) = 0.15 +/- 0.08 to be determined. The results therefore provide strong indirect evidence for the participation of the radical-forming channel of the title reaction.     

Wetting of mixed OHH(2)O layers on Pt(111)

We describe the effect of growth temperature and OHH(2)O composition on the wetting behavior of Pt(111). Changes to the desorption rate of ice films were measured and correlated to the film morphology using low energy electron diffraction and thermal desorption of chloroform to measure the area of multilayer ice and monolayer OHH(2)O exposed. Thin ice films roughen, forming bare (radical39 x radical39)R16 degrees water monolayer and ice clusters. The size of the clusters depends on growth temperature and determines their kinetic stability, with the desorption rate decreasing when larger clusters are formed by growth at high temperature. Continuous films of more than approximately 50 layers thick stabilize an ordered incommensurate ice film that does not dewet. OH coadsorption pins the first layer into registry with Pt, forming an ordered hexagonal (OH+H(2)O) structure with all the H atoms involved in hydrogen bonding. Although this layer has a similar honeycomb OH(x) skeleton to ice Ih, it is unable to reconstruct to match the bulk ice lattice parameter and does not form a stable wetting layer. Water aggregates to expose bare monolayer (OH+H(2)O), forming bulk ice crystallites whose size depend on preparation temperature. Increasing the proportion of water in the first layer provides free OH groups which stabilize the multilayer. The factors influencing multilayer wetting are discussed using density functional theory calculations to compare water adsorption on top of (OH+H(2)O) and on simple models for commensurate water structures. We show that both the (OH+H(2)O) structure and "H-down" water layers are poor proton acceptors, bonding to the first layer being enhanced by the presence of free OH groups. Formation of an ordered ice multilayer requires a water-metal interaction sufficient to wet the surface, but not so strong as to prevent the first layer relaxing to stabilize the interface between the metal and bulk ice.     

Mutual sensitization of the oxidation of nitric oxide and a natural gas blend in a JSR at elevated pressure: experimental and detailed kinetic modeling study

The mutual sensitization of the oxidation of NO and a natural gas blend (methane-ethane 10:1) was studied experimentally in a fused silica jet-stirred reactor operating at 10 atm, over the temperature range 800-1160 K, from fuel-lean to fuel-rich conditions. Sonic quartz probe sampling followed by on-line FTIR analyses and off-line GC-TCD/FID analyses were used to measure the concentration profiles of the reactants, the stable intermediates, and the final products. A detailed chemical kinetic modeling of the present experiments was performed yielding an overall good agreement between the present data and this modeling. According to the proposed kinetic scheme, the mutual sensitization of the oxidation of this natural gas blend and NO proceeds through the NO to NO2 conversion by HO2, CH3O2, and C2H5O2. The detailed kinetic modeling showed that the conversion of NO to NO2 by CH3O2 and C2H5O2 is more important at low temperatures (ca. 820 K) than at higher temperatures where the reaction of NO with HO2 controls the NO to NO2 conversion. The production of OH resulting from the oxidation of NO by HO2, and the production of alkoxy radicals via RO2 + NO reactions promotes the oxidation of the fuel. A simplified reaction scheme was delineated: NO + HO2 --> NO2 + OH followed by OH + CH4 --> CH3 + H2O and OH + C2H6 --> C2H5 + H2O. At low-temperature, the reaction also proceeds via CH3 + O2 (+ M) --> CH3O2 (+ M); CH3O2 + NO --> CH3O + NO2 and C2H5 + O2 --> C2H5O2; C2H5O2 + NO --> C2H5O + NO2. At higher temperature, methoxy radicals are produced via the following mechanism: CH3 + NO2 --> CH3O + NO. The further reactions CH3O --> CH2O + H; CH2O + OH --> HCO + H2O; HCO + O2 --> HO2 + CO; and H + O2 + M --> HO2 + M complete the sequence. The proposed model indicates that the well-recognized difference of reactivity between methane and a natural gas blend is significantly reduced by addition of NO. The kinetic analyses indicate that in the NO-seeded conditions, the main production of OH proceeds via the same route, NO + HO2 --> NO2 + OH. Therefore, a significant reduction of the impact of the fuel composition on the kinetics of oxidation occurs.     

Impact of water on the OH + HOCl reaction

The effect of a single water molecule on the OH + HOCl reaction has been investigated. The naked reaction, the reaction without water, has two elementary reaction paths, depending on how the hydroxyl radical approaches the HOCl molecule. In both cases, the reaction begins with the formation of prereactive hydrogen bond complexes before the abstraction of the hydrogen by the hydroxyl radical. When water is added, the products of the reaction do not change, and the reaction becomes quite complex yielding six different reaction paths. Interestingly, a geometrical rearrangement occurs in the prereactive hydrogen bonded region, which prepares the HOCl moiety to react with the hydroxyl radical. The rate constant for the reaction without water is computed to be 2.2 × 10(-13) cm(3) molecule(-1) s(-1) at room temperature, which is in good agreement with experimental values. The reaction between ClOH···H(2)O and OH is estimated to be slower than the naked reaction by 4-5 orders of magnitude. Although, the reaction between ClOH and the H(2)O···HO complex is also predicted to be slower, it is up to 2.2 times faster than the naked reaction at altitudes below 6 km. Another intriguing finding of this work is an interesting three-body interchange reaction that can occur, that is HOCl + HO···H(2)O → HOCl···H(2)O + OH.     

The nature of the interactions between Pt4 cluster and the adsorbates *H, *OH, and H2O

The nature of the interactions between the platinum cluster Pt4 and the adsorbates (*)H, (*)OH, and H2O, as well as the influence of these adsorbates on the electronic structure of the Pt4 cluster, was investigated by density functional theory (B3LYP, B3PW91, and BP86) together with the effective core potential MWB for the platinum atoms, and 6-311++G(d,p) and aug-cc-pVTZ basis set for the H and O atoms. Identification of the optimal spin multiplicity state and the preferential adsorption sites were also evaluated. Adsorption changes the cluster geometry significantly, but the relaxation effects on the adsorption energy are negligible. The adsorbates bind preferentially atop of the cluster, where high bonding energies were observed for the radical species. Adsorption is followed by a charge transfer from the Pt4 cluster toward radical adsorbates, but this charge transfer occurs in a reversed way when the adsorbate is H2O. In contrast with water, adsorption of the radicals (*)H and (*)OH on platinum causes a remarkable re-distribution of the spin density, characterized by a spin density sharing between the (*)H and (*)OH radicals and the cluster. The covalent character of the cluster-adsorbate interactions, determined by electron density topological analysis, reveals that the Pt4-H interaction is completely covalent, Pt4-OH is partially covalent, and Pt4-H2O is almost noncovalent.