Molecular structure and conformation of chloronitromethane as determined by gas-phase electron diffraction and theoretical calculations

The molecular structure of chloronitromethane was studied in the gas phase at a nozzle-tip temperature of 373 K. The experimental data were interpreted using a dynamic model where the molecules are undergoing torsional motion governed by a potential function: V = V2/2x(1 - cos 2tau) + V4/2x(1 - cos 4tau) with V2 = 0.81(30) and V4 = 0.12(40) kcal/mol (tau is the dihedral angle between the C-Cl and N-O bond). The conformer with a zero degree dihedral angle is the most stable conformer. Comparison with results from HF/MP2/B3LYP 6-311G(d,p) calculations were made. The important geometrical parameter values (for the eclipsed form) obtained from least-squares refinements are the following: r(C-H) = 1.061(18)A, r(C-N) = 1.509 (5)A, r(N-O) = 1.223(1)A, r(C-Cl) = 1.742(2)A, angleClCN = 115.2(7) degrees, angleO4NC = 118.9(10) degrees, angleO5NC = 114.9(16) degrees, and angleClCH 115(4) degrees.     

Molecular structure and conformation of 2,3-dichloro-1-propene as determined by gas-phase electron diffraction

The molecular structure and conformation of 2,3-dichloro-1-propene have been determined by gas-phase electron diffraction at nozzle temperatures of 24, 90 and 273°C. The molecules exist as a mixture of two conformers with the chlorine atoms anti (torsion angle ∠φ = 0°) or gauche (∠φ = 109°) to each other and with the anti form the more stable. The composition (mole fraction) of the vapor with uncertainties estimated at 2σ was found to be 0.55 (0.08), 0.49 (0.08) and 0.41 (0.10) at 24, 90 and 273°, respectively. These values correspond to an energy difference with estimated standard deviation ΔE° = E°_g-E°_a = 0.7 ± 0.3 kcal mol^?1 and an entropy difference ΔS° = S°_g-S°_a = 0.6 ± 0.9 cal mol^?1 K^?1. Some of the diffraction results, together with spectroscopic observations, permit the evaluation of an approximate torsional potential function of the form 2V = V₁ (1 - cos φ) + V₂ (1 - cos 2φ) + V₃ (1 - cos 3φ); the results are V₁ = 4.4 ± 0.5, V₂ = ?2.9 ± 0.5 and V₃ = 4.8 ± 0.2, all in kcal mol^?1. The results at 24°C for the distance (r_a) and angle (∠_α) parameters, with estimated uncertainties of 2σ, are: r(C_sp²-H) = 1.098(0.020)Å, r(C_sp³-H) = 1.103(0.020)Å, r(CC) = 1.334(0.009)Å, r(C-C) = 1.504(0.013)Å, r(C_sp²-Cl) = 1.752(0.021)Å, r(C_sp³-Cl) = 1.776(0.020)Å, ∠C-CC = 127.6(1.1)°, ∠C_sp³-C_sp²-Cl = 110.2(1.0), ∠C_sp²-C_sp³-Cl = 113.1(1.2)°, ∠H-C_sp³-H = 109.5° (assumed), ∠CC-H = 120.0° (assumed) and ∠φ = 108.9(3.4)°.     

Molecular structure of arsabenzene by gas-phase electron diffraction

Vapor-phase molecules of C₅H₅As were found, assuming C_2v symmetry, to have the following structure parameters and uncertainties (2.5σ): r_g(C-As)= 1.850 ± 0.003 Å, r_g(C₂–C₃) = 1.390 ± 0.032 /rA, r_g(C₃–C₄) = 1.401 ± 0.032 /rA, r_g(C-C_ave) = 1.395₄ ± 0.002 Å, ∠CAsC = 97.3 ± 1.7°, ∠AsCC = 125.1 ± 2.8°, and ∠C₃C₃C₄ = 124.2 ± 2.9°. Amplitudes of vibration were also determined. Auxiliary information is more restrictive than pure electron diffraction intensities as evidence that the molecule is rigorously planar. Structural characteristics of arsabenzene reinforce prior indications that the heterocyclic molecule is genuinely aromatic.     

The structure and conformation of dichloroacetyl chloride as determined by gas-phase electron diffraction

The structure and conformation of dichloroacetyl chloride have been determined by gas-phase electron diffraction at nozzle temperatures of 20 and 119°C. The molecules exist as a mixture of two conformers with the hydrogen and oxygen atoms syn and gauche to each other. The composition (mole fraction of syn form) of the vapor was found to be 0.72 ± 0.06 and 0.73 ± 0.12 at 20 and 119°C, respectively, corresponding to almost equal energy for the two forms. The results for the distance (r_g), angle ∠α and r.m.s. amplitude (l) parameters obtained at the two temperatures are entirely consistent. At 20°C the more important parameters, with estimated uncertainties of 3σ are: r(C-H) = 1.062(0.049)Å, r(C0) = 1.189(0.003)Å, r(C-C) = 1.535(0.008)Å, r(CO-Cl) = 1.752 (0.009)Å, r(CHCl-Cl) = 1.771(0.004)Å, ∠C-CO = 123.3(1.3)°, ∠C-CO-Cl = 113.9 (5.9)°, ∠C-CHCl—Cl = 109.5(1.5)°, ∠C1-C-Cl = 111.7(0.5)°, ∠Cl-C-H = 108.0(1.5), φ₁ (HCCO torsion angle in the syn conformer) = 0.0° (assumed), φ₂ (HCCO torsion angle in the gauche conformer) = 138.2(5.1)°.     

The molecular structure of pyrazine as determined from gas-phase electron diffraction data

The structure of pyrazine (1,4 diazabenzene, C₄H₄N₄) has been determined at 333 K by means of gas-phase electron diffraction. The r_g parameters are as follows: r(C-C) = 1.339 ± 0.002 Å. r(C-N) = 1.403 ± 0.004 Å, r(C-H) = 1.115 ± 0.004 Å. ∠C-C-N = 115.6 ± 0.4°, and ∠C-C-H = 123.9 ± 0.6° (error limits are 2.5σ). At a 10% level the r_α structure does not differ significantly from the structure in the solid state, so long as high order X-ray, results corrected for librational motion are used; otherwise significantly different results are found even at the 1% level. Calculated and observed mean square amplitudes compare favourably.     

1,1,2,2-tetrabromodisilane: gas-phase molecular structure and conformational composition as determined by electron diffraction

The molecular structure of 1,1,2,2-tetrabromodisilane has been investigated using gas-phase electron diffraction data obtained at 110°C. At this temperature the molecules exist as a mixture of about equal parts (X = 0.5 ±0.2) of the two conformers with the H---Si---Si---H torsion angle equal to 180° (anti) or 60° (gauche). Assuming that the two conformers differ in their geometries only in the torsion angle φ, some of the important distance (r_a) and angle () parameters are: r(Si---Si) = 2.349(19) Å, r(Si---Br) = 2.205(5) Å, r(Si---H) = 1.485 Å (assumed), Br---Si---Br = 110.1(1.6)°, Si---Si---Br = 107.1(1.2)° Si---Si---H = 108.6° (assumed). The error limits are 2σ. The observed conformational composition (X_anti = 0.5(0.2)) corresponds to an energy difference between the conformers of ΔE = E(gauche) — E(anti) = 0.5 ± 0.6 kcal mol⁻¹, assuming ΔS = Rln2.     

The molecular structure of fluoromalononitrile as determined by gas-phase electron diffraction and ab initio calculations

The molecular structure of fluoromalononitrile was studied by means of gas-phase electron diffraction and quantum mechanical methods using HF/6-31G(d), MP2/6-311++G(2df,2pd) and DFT/B3LYP/6-31G(d), B3PW91/6-31G(d), B3LYP/6-311++G(2df,2pd) and B3PW91/6-311++G(2df,2pd). The r(g) and angle(alpha) structural parameters we obtained from the present analysis are: CC=1.487(5) A, CN=1.157(3) A, CF=1.386(5) A, CH=1.096 A (ass.), angleCCC=106.7(1.0) degrees , angleCCF=108.0(0.7) degrees , angleCCN=177.6(2.0) degrees . Uncertainties in parenthesis are 3sigma.     

The gas-phase molecular structure of methyl formate,determined by electron diffraction

The structure of methyl formate in the gas phase has been reinvestigated by electron diffraction. The results confirm that the molecular skeleton is cis-planar, with bond lengths and angles in close agreement with those found by microwave techniques. Principal parameters (r_a) are: r(CO) 120.2(2) pm, r(C-O) 134.0(2), and 143.5(3) pm; ∠ (OC-O) 125.4(5)°, and ∠ (C-O-C) 115.9(5)°.     

The gas-phase molecular structure of silyl chloroacetylene,determined by electron diffraction

The molecular structure of SiH₃CCCl in the gas phase has been investigated using electron diffraction. Mean amplitudes of vibration and perpendicular amplitude correction factors calculated from spectroscopic data enabled refinement of both r_a and r_α structures to be carried out. The r_α refinement leads to a linear skeleton, with r_α parameters: r(Si-C) 181.2(5) pm, r(CC) 123.4(6) pm, r(C-Cl) 162.0(5) pm, r(Si-H) 148.8(12) pm, ∠HSiC 109.4(20)°. The r_a structure shows an apparent angle in the skeleton of 172(3)° (∠CCCl) owing to shrinkage.     

The molecular structure and pseudorotational motion of 1,1-difluorosilacyclopetane as determined by gas-phase electron diffraction

The structure of 1,1-difluorosilacyclopentane has been studied by gas-phase electron diffraction. The molecule is found to have a barrier of pseudorotion of 2.25(90) kcal mol⁻¹. The potential function has minimum at the twist form (C₂) symmetry and maxima at the envelope forms. The major bond distances (itr)_g) and valence angles obtained from the least-squares refinements with error estimates are as follow: r(C---H) = 1.128(7) A, r(C---C)_av = 1.553(15) A, r(Si---F) = 1.582(6) A, r(Si---C) = 1.853(3) A, (CSiF) = 113.4′(3), CCC = 106°(1), and Tau(C1C2C3C4) = 56.0°(32).     

Molecular structure and conformation of gaseous vinyldimethylchlorosilane as determined by electron diffraction

The molecular structure of vinyldimethylchlorosilane has been determined by gas phase electron diffraction at room temperature. The least squares values of the bond lengths (r_g) and bond angles (∠_α) are : r(CH) = 1.086(6) Å, r(CC) = 1.347(5) Å, r(SiC=) = 1.838(6) Å, r(SiC) = 1.876(3) Å, r(SiCl) = 2.078(2) Å, ∠CCSi = 127.8° (1.2) and ∠=CSiCl = 107° (1). Models with pure syn form and a mixture of syn and gauche gave equally good agreement with the diffraction data.     

Molecular structure of propargylgermane (2-propynylgermane) determined by gas-phase electron diffraction and quantum chemical calculations

The molecular structure of propargylgermane, HCCCH₂GeH₃, has been determined by gas-phase electron diffraction. The electron-diffraction investigation has been supported by density functional theory and ab initio calculations. The r_a value of the bond lengths (pm) are: r(C–Ge)=197.2(1); r(C–C)=143.9(2); r(CC)=123.1(1); r(H–C_acetylene)=108.5(3); r(C–H)=111.6(3) and r(Ge–H_average)=153.7(2). The Ge–C–C angle is 111.7(1)° and the C–CC angle is 178.3(4)°. The uncertainties are one standard deviation from the least-squares refinement.     

The molecular structure and conformation of trichloronitromethane as determined by gas-phase electron diffraction and theoretical calculations

The molecular structure of trichloronitromethane has been studied in the gas phase using electron diffraction data. The molecules are found to undergo low barrier rotation about the CN bond with a planar CNO₂ moiety in agreement with HF/MP2/B3LYP/6-311G(d,p) calculations. The experimental data are consistent with a dynamic model using a potential function for the torsion of V = (V₆/2)(1 − cos 6τ). The major geometrical parameters (r_g and ) for the eclipsed form, obtained from least squares analysis of the data are as follows: r(NO₃) = r(NO₄) = 1.213(2) Å, r(CN) = 1.592(6) Å, r(CCl)_av = 1.749(1) Å, Cl₅CN/Cl₆CN = 109. 6°/106.3°(2), O₃NC/O₄NC = 117. 6°/114.1°(4), τCl₅C₁N₂O₃ = 0.0°, and V₆ = 0.20(25) kcal/mol.     

Molecular structure and conformation of gaseous chloroacetyl chloride as determined by electron diffraction

Chloroacetyl chloride is studied by gas-phase electron diffraction at nozzle-tip tempera- tures of 18, 110 and 215°C. The molecules exist as a mixture of anti and gauche confor- mers with the anti form the more stable. The composition (mole fraction) of the vapor with uncertainties estimated at 2σ is found to be 0.770 (0.070), 0.673 (0.086) and 0.572 (0.086) at 18, 110 and 215°C, respectively. These values correspond to an energy difference with estimated standard deviation ΔE^o = E^o_g -E^o_a = 1.3 ± 0.4 kcal mol^?1 and an entropy difference ΔS^o = S^o_g -S^o_a = 0.7 ± 1.1 cal mol^?1 K^?1. Certain of the diffraction results permit the evaluation of an approximate torsional potential function of the form 2V = V₁(1 - cos φ) + V₂(1 - cos 2φ) + V₃(1 - cos 3φ); the results are V₁ = 1.19 ± 0.33, V₂ = 0.56 ± 0.20 and V₃ = 0.94 ± 0.12, all in kcal mol^?1. The results for the distance (r_a), angle (_∠α) and r.m.s. amplitude parameters obtained at the three temperatures are entirely consistent. At 18°C the more important parameters are, with estimated uncertainties of 2σ, r(C-H) = 1.062(0.030) Å, r(CO) = 1.182(0.004) Å, r(C-C) = 1.521(0.009) Å. r(CO-Cl) = 1.772(0.016) Å, r(CH₂-Cl) = 1.782(0.018) Å, ∠C-C-0 = 126.9(0.9)°, ∠CH₂-CO-C1 = 110.0(0.7)°,∠CO-CH₂-C1 = 112.9(1–7)°, ∠H-C-H = 109.5° (assumed), ∠φ (gauche torsion angle relative to 0° for the anti form) = 116.4(7.7)°, δ (r.m.s. amplitude of torsional vibration in the anti conformer) == 17.5(4.2)°.     

Molecular structure of caffeine as determined by gas electron diffraction aided by theoretical calculations

The molecular structure of caffeine (3,7-dihydro-1,3,7-trimethyl-1H-purine-2,6-dione) was determined by means of gas electron diffraction. The nozzle temperature was 185 °C. The results of MP2 and B3LYP calculations with the 6-31G⁷ basis set were used as supporting information. These calculations predicted that caffeine has only one conformer and some of the methyl groups perform low frequency internal rotation. The electron diffraction data were analyzed on this basis. The determined structural parameters (r_g and ∠_α) of caffeine are as follows: <r(NC)_ring> = 1.382(3) Å; r(CC) = 1.382(←) Å; r(CC) = 1.446(18) Å; r(CN) = 1.297(11) Å; <r(NC_methyl)> = 1.459(13) Å; <r(CO)> = 1.206(5) Å; <r(CH)> = 1.085(11) Å; ∠N₁C₂N₃ = 116.5(11)°; ∠N₃C₄C₅ = 121. 5(13)°; ∠C₄C₅C₆ = 122.9(10)°; ∠C₄C₅N₇ = 104.7(14)°; ∠N₉–C₄=C₅ = 111.6(10)°; <∠NCH_methyl> = 108.5(28)°. Angle brackets denote average values; parenthesized values are the estimated limits of error (3σ) referring to the last significant digit; left arrow in parentheses means that this parameter is bound to the preceding one.     

Molecular structure of N-chlorosuccinimide studied by gas-phase electron diffraction and quantum-chemical methods

The molecular structure of N-chlorosuccinimide has been studied by GED method at the nozzle temperature of 116 °C. Vibrational corrections to the r _a parameters, Δ(r _a − r _e), have been calculated using the scaled quadratic and cubic force constants from B3LYP/6-31G(df,p) calculations. The force field scaling has been carried out using the IR and Raman spectra of the solid N-chlorosuccinimide. The molecular skeleton and the bond conformation around nitrogen were found to be planar within large experimental errors. The equilibrium geometrical parameters derived from the experimental data assuming C _2v molecular symmetry and those from MP2(fc)/6-311G(3df,2pd) calculations are in a good agreement.     

Molecular structure of 2,4-dicarba-closo.heptaborane-7 by gas-phase electron diffraction

Gas phase electron diffraction patterns of 2,4-dicarba-closo-heptaborane were recorded at room temperature. Least squares analysis of the reduced intensity data show that the molecule is a pentagonal bipyramid and confirms the C_2v symmetry in the gas phase. The carbon atoms are located in the pentagonal belt and are separated by one boron atom. No significant departures from planarity of the pentagonal belt are indicated. The bond lengths in the belt are C(4)-B(3), 1.537 Å, C(4)-B(5), 1.558 Å, and B(5)-B(6), 1.659 Å. The distance from the apical B(l) atom to the B(3) is 1.852 Å, from the B(1) to the B(5) atom is 1.772 A, and from the B(1) to the C(2) atom is 1.717 Å. The bond angles in the pentagonal belt are C(2)B(3)C(4) = 100.5°, B(3)C(4)B(5) = 116.7° and C(4)B(5)B(6) = 103.0°. The angle between B(1)B(3)B(7) = 84.7°. Comparisons are made with structural data and moments of inertia determined by microwave spectroscopy.     

The structure of 1-chloro-1-silabicyclo(2.2.2)octane as determined by gas-phase electron diffraction

The structure of 1 -chloro-1 -si labicyclo( 2.2.2 )octane is determined by gas-phase electron diffraction. The molecule is found to have a large amplitude twisting motion with a double minimum quartic potential function of the form V(φ) = V_o[1 + (φ/φ_o)⁴ - 2(φ/φ_o)²]. Least-squares analysis of the experimental data gives values of 1.4(0.8) kcal mole^? for V_o and 17.5(2.5)° for φ_o. Other structural parameters for the “quasi-C_3v” cage-like molecule include: r_g(Si-Cl) = 2.061(3) Å, r_g(Si-C) = 1.863(3) Å, r_g(C-C_av) = 1.559(2) Å, and r_g(C-H_av) = 1.098(7) Å. Several valence angles exhibit large deviations from tetrahedral values, e.g. ∠Cl-Si-C₂ = 114.6(0.2)°, ∠Si-C₂-C₃ = 105.8(0.4)°, ∠C₂-C₃-C₄ = 114.2(1.2)°, ∠C-₃-C₄-C₅ = 111.4(0.8)° and ∠C₂-Si-C₆= 103.9(0.2)°. Many of the structural features in this strained polycyclic compound. Including the nature of the quartic potential function, can be rationalized in terms of a simple molecular mechanics model. A new method for the calculation of an analytical Jacobian of the intensity function with respect to parameters of the potential function is also discussed.     

Molecular structure and ring distortions of p-dichlorobenzene as determined by electron diffraction

The molecular structure of p-dichlorobenzene in the vapour phase has been studied by electron diffraction. Least-squares refinement of a model with D_2h symmetry has led to the accurate determination of the small deviations of the benzene ring from D_6h symmetry caused by the chlorine substituents. The most appreciable effect is an increase from 120° to 121.6 ± 0.2° of the internal angle at the ipso carbon, associated with a shortening of the distance between the two ipso atoms. A less pronounced effect is a shortening of the C-C bonds that originate from the ipso carbons as compared to the central C-C bonds (r_g = 139.0 ± 0.3 pm vs. 139.5 ± 0.4 pm). Other bond distances are r_g (C-Cl) - 173.0 ± 0.4 pm and r_g (C-H) = 109.4 ± 1.0 pm. The observed ring distortions are in agreement with those obtained by low-temperature X-ray crystallography on three different crystal phases of p-dichlorobenzene. They are also consistent with those obtained for chloro-benzene by gas-phase electron diffraction and by NMR spectroscopy in a nematic solvent. The r_s structure of chlorobenzene obtained in a recent study by micro-wave spectroscopy is shown to need revision, as far as the ipso region of the ring is concerned.     

The molecular structure of cyclohexanone determined by gas-phase electron diffraction,including microwave data

The electron diffraction data for gaseous cyclohexanone, collected at 371 K, combined with microwave rotational constants, can be explained by a single chair conformation. Least-squares analysis of the observed data led to an r_g, r_α-structure with the following geometrical parameters: r_CO = 1.229 Å, r_C1C2 = 1.503 Å, r_C1C2 = 1.542 Å, r_C3C4 = 1.545 Å, r_CH = 1.088 Å, ∠ C-CO-C = 115.3°, ∠ CO-C-C = 111.5°, ∠ C-C-C = 110.8°, ∠ H-C-H = 106°. The sp₂ -hybridized part of the ring is less puckered, whereas the sp³ part is more puckered than in cyclohexane.