Digital bioanalysis

Digital microfluidics has recently emerged as a new paradigm in the world of lab-on-a-chip technology. A wide variety of bioanalyses have been successfully implemented in this format. This paper reviews the various techniques that have been adapted to digital microfluidic systems, and the current state of the field. Figure A multiplexed digital microfluidic device. Six analytical platforms are wired in series, allowing multiple independent analyses to be performed simultaneously from a single set of controls.     

Combining TXRF,FT-IR and GC–MS information for identification of inorganic and organic components in black pigments of rock art from Alero Hornillos 2 (Jujuy,Argentina)

Archaeological samples are complex in composition since they generally comprise a mixture of materials submitted to deterioration factors largely dependent on the environmental conditions. Therefore, the integration of analytical tools such as TXRF, FT-IR and GC–MS can maximize the amount of information provided by the sample. Recently, two black rock art samples of camelid figures at Alero Hornillos 2, an archaeological site located near the town of Susques (Jujuy Province, Argentina), were investigated. TXRF, selected for inorganic information, showed the presence of manganese and iron among other elements, consistent with an iron and manganese oxide as the black pigment. Aiming at the detection of any residual organic compounds, the samples were extracted with a chloroform–methanol mixture and the extracts were analyzed by FT-IR, showing the presence of bands attributable to lipids. Analysis by GC–MS of the carboxylic acid methyl esters prepared from the sample extracts, indicated that the main organic constituents were saturated (C_16:0 and C_18:0) fatty acids in relative abundance characteristic of degraded animal fat. The presence of minor C_15:0 and C_17:0 fatty acids and branched-chain iso-C_16:0 pointed to a ruminant animal source. Figure Rock art painting at Hornillos 2 Cave, Susques, Argentina     

A headspace solid-phase microextraction procedure coupled with gas chromatography–mass spectrometry for the analysis of volatile polycyclic aromatic hydrocarbons in milk samples

A sensitive and solvent-free method for the determination of ten polycyclic aromatic hydrocarbons, namely, naphthalene, acenaphthylene, acenaphthene, fluorene, phenanthrene, anthracene, fluoranthene, pyrene, benzo[a]anthracene and chrysene, with up to four aromatic rings, in milk samples using headspace solid-phase microextraction and gas chromatography–mass spectrometry detection has been developed. A polydimethylsiloxane–divinylbenzene fiber was chosen and used at 75°C for 60 min. Detection limits ranging from 0.2 to 5 ng L⁻¹ were attained at a signal-to-noise ratio of 3, depending on the compound and the milk sample under analysis. The proposed method was applied to ten different milk samples and the presence of six of the analytes studied in a skimmed milk with vegetal fiber sample was confirmed. The reliability of the procedure was verified by analyzing two different certified reference materials and by recovery studies. Figure Milk is safe, healthy food     

Micro-plasma: a novel ionisation source for ion mobility spectrometry

Ion mobility spectrometry is an analytical method for identification and quantification of gas-phase analytes in the ppb_v-ppt_v range. Traditional ionisation methods suffer from low sensitivity (UV light), lack of long-term stability (partial discharge), or legal restrictions when radioactive sources are used. A miniaturised helium plasma was applied as ionisation source in an ion mobility spectrometer (IMS). Experiments were carried out to compare plasma IMS with β-radiation IMS. It could be demonstrated that the plasma IMS is characterised by higher sensitivity and selectivity than β-radiation ionisation. Plasma IMS is approximately 100 times more sensitive than the β-radiation IMS. Furthermore, variable sensitivity can be achieved by variation of the helium flow and the electric field of the plasma, and variable selectivity can be achieved by changing the electric field of the IMS. The experimental arrangement, optimisation of relevant conditions, and a typical application are presented in detail. Figure Micro-plasma used in ion mobility spectrometry     

Analytical speciation as a tool to assess arsenic behaviour in soils polluted by mining

A study is performed to evaluate the occurrence of arsenic in polluted soils using acidic extractions and liquid chromatography–hydride generation–atomic fluorescence spectrometry (LC–HG–AFS) for speciation analysis. Seven soil samples were collected in an abandoned area polluted by mining in the Eastern Pyrenees (Spain), and two uncontaminated soils were taken for reference purposes. Moreover, the total arsenic content is evaluated in two different sieved fractions in order to obtain information on the possible particle-size-dependent association of arsenic with soil components. Soil samples were extracted with both phosphoric and ascorbic acids and the stabilities of the extracted species were studied. The arsenic species were determined by LC–HG–AFS. In addition, the ability of soil grinding to effect species change is also assessed. Arsenite and arsenate were found in the polluted soils, but only arsenate was found in the unpolluted soils. The quality of the results was assessed through a mass balance calculation and by analysing two soil Certified Reference Materials. Valuable information regarding arsenic occurrence in the studied soils is obtained from the speciation results. The presence of arsenite in the extracts can be attributed to arsenopyrite residues, whereas the presence of arsenate indicates release from weathered material. Figure Abandoned mining polluted area in Eastern Pyrenees     

Chemosensors in environmental monitoring: challenges in ruggedness and selectivity

Environmental analysis is a potential key application for chemical sensors owing to their inherent ability to detect analytes on-line and in real time in distributed systems. Operating a chemosensor in a natural environment poses substantial challenges in terms of ruggedness, long-term stability and calibration. This article highlights current trends of achieving both the necessary selectivity and ruggedness: one way is deploying sensor arrays consisting of robust broadband sensors and extracting information via chemometrics. If using only a single sensor is desired, molecularly imprinted polymers offer a straightforward way for designing artificial recognition materials. Molecularly imprinted polymers can be utilized in real-life environments, such as water and air, aiming at detecting analytes ranging from small molecules to entire cells. Figure       

A new ICP–TOFMS. Measurement and readout of mass spectra with 30 μs time resolution, applied to in-torch LA–ICP–MS

In-torch LA–ICP–MS was implemented into an in-house-built ICP–TOFMS system. The fast data acquisition capabilities of the new configuration allowed simultaneous multi-element measurement and readout of in-torch LA–ICP–MS signals with 30 μs time resolution. The measurements confirmed previously observed fine structures of in-torch generated signals and provided new insights in the dynamic processes in the plasma on a microsecond time scale. The new setup is described in detail and first figures of merit are given. Figure Time dependent multi element signal after laser ablation in the torch of an ICP-TOFMS instrument     

The αPROX assay: fluorescence screening of the inhibitory effects of hydrophilic antioxidants on protein oxidation

We report on a new and convenient high-throughput fluorescence technique for determining antioxidant capacities of hydrophilic food samples. The new method is called αPROX (anti protein oxidation) and is based on an equimolar complex of diphenylhexatriene propionic acid (DPHPA) and bovine serum albumin (BSA) in aqueous buffer at pH 7.4. DPHPA is a reporter fluorophore that becomes nonfluorescent upon free radical-induced oxidation. In a typical assay, the DPHPA/BSA complex is challenged with peroxyl radicals and shows almost the same susceptibility to oxidation as unlabeled BSA. The progress of protein oxidation and its inhibition by antioxidants at physiological pH is determined from the time-dependent decrease in DPHPA fluorescence intensity. The αPROX method was compared to other techniques frequently used to measure antioxidant capacities. In this article, representative results are provided for the inhibitory effects of pure food components, fruit juices, wines, and various polar plant extracts on protein oxidation.      

Capillary HPLC–ICP MS mapping of selenocompounds in spots obtained from the 2-D gel electrophoresis of the water-soluble protein fraction of selenized yeast

A method based on ICP collision-cell MS detection in capillary HPLC was developed to gain an insight into the purity and identity of selenium-containing proteins separated by 1-D and 2-D electrophoresis. The bands and spots obtained after the separation of water-soluble proteins in selenized yeast were digested with trypsin prior to chromatography. Selenium could be detected down to the subpicogram level. The method, assisted by information obtained by MALDI TOF MS on the 5000 Da cut-off fraction, permitted the purity of bands and spots to be estimated and the efficiency of tryptic digestion and the quantity of selenium present in individual peptides to be evaluated. Owing to the high sensitivity and the lack of matrix suppression effects, the method provided chromatograms with signal-to-noise ratios of 10–1000 in conditions where the common ES Q–TOF MS detection failed.      

The use of electrochemical impedance spectroscopy for biosensing

This review introduces the basic concepts and terms associated with impedance and techniques of measuring impedance. The focus of this review is on the application of this transduction method for sensing purposes. Examples of its use in combination with enzymes, antibodies, DNA and with cells will be described. Important fields of application include immune and nucleic acid analysis. Special attention is devoted to the various electrode design and amplification schemes developed for sensitivity enhancement. Electrolyte insulator semiconductor (EIS) structures will be treated separately. Figure An alternating current which is forced to pass an interface is sensitive to surface changes and will detect impedance changes due to biomolecule immobilisation or formation of a recognition complex. This can be used for the construction of biosensor electrodes     

Chemiluminescence assay for quinones based on generation of reactive oxygen species through the redox cycle of quinone

A sensitive and selective chemiluminescence assay for the determination of quinones was developed. The method was based on generation of reactive oxygen species through the redox reaction between quinone and dithiothreitol as reductant, and then the generated reactive oxygen was detected by luminol chemiluminescence. The chemiluminescence was intense, long-lived, and proportional to quinone concentration. It is concluded that superoxide anion was involved in the proposed chemiluminescence reaction because the chemiluminescence intensity was decreased only in the presence of superoxide dismutase. Among the tested quinones, the chemiluminescence was observed from 9,10-phenanthrenequinone, 1,2-naphthoquinone, and 1,4-naphthoquinone, whereas it was not observed from 9,10-anthraquinone and 1,4-benzoquinone. The chemiluminescence property was greatly different according to the structure of quinones. The chemiluminescence was also observed for biologically important quinones such as ubiquinone. Therefore, a simple and rapid assay for ubiquinone in pharmaceutical preparation was developed based on the proposed chemiluminescence reaction. The detection limit (blank + 3SD) of ubiquinone was 0.05 μM (9 ng/assay) with an analysis time of 30 s per sample. The developed assay allowed the direct determination of ubiquinone in pharmaceutical preparation without any purification procedure. Figure Chemiluminescence generated through the redox cycle of quinone     

Study of toxicity of imidazolium ionic liquids to watercress (<Emphasis Type="Italic">Lepidium sativum</Emphasis> L.)

The sensitivity of Lepidium sativum L. germination to three imidazolium ionic liquids was investigated in solutions and soils artificially contaminated with mixtures of those compounds. In case of aquatic solutions, the toxic character of analyzed compounds is connected with their hydrophobicity. The seedling growth is increasing with the decrease in ionic liquid hydrophobicity. The novelty of those studies is the application of high-performance liquid chromatography, which was used for the determination of ionic liquid quantity absorbed by cress. There was almost linear relationship between decrease in root germination and amount of ionic liquid uptaken by cress. Furthermore, the systematic studies on the influence of total organic carbon content in soil on the toxicity of ionic liquids to cress were performed for the first time. Hazardous effects appeared to be closely connected with organic matter: with the decrease of total organic carbon quantity, the inhibition of plant growth was more significant. Visual effects of ionic liquid toxic activity to garden cress are similar as in the case of nutrient deficit in plants. Figure Visual phytotoxicity effects observed during the test; leaf chromatosis: light green and yellow (up photos), violet (lower photos)     

Fourier transform infrared spectroscopy as a tool to study structural properties of cytochromes P450 (CYPs)

Cytochrome P450 proteins (CYPs) are a big class of heme proteins which are involved in various metabolic processes of living organisms. CYPs are the terminal catalytically active components of monooxygenase systems where the substrate binds and is hydroxylated. In order to be functionally competent, the protein structures of CYPs possess specific properties that must be explored in order to understand structure–function relationships and mechanistic aspects. Fourier transform infrared spectroscopy (FTIR) is one tool that is used to study these structural properties. The application of FTIR spectroscopy to the secondary structures of CYP proteins, protein unfolding, protein–protein interactions and the structure and dynamics of the CYP heme pocket is reviewed. A comparison with other thiolate heme proteins (nitric oxide synthase and chloroperoxidase) is also included. Figure The protein secondary structure, protein unfolding, redox-partner protein–protein interaction, structural changes induced by the reduction of the heme iron, and the structure and dynamics of the active site of cytochromes P450 (CYP) can be studied using Fourier transform infrared spectroscopy (FTIR). FTIR spectroscopy is a good approach for gaining a deeper insight into structure–function relationships in CYPs. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Headspace mass spectrometry methodology: application to oil spill identification in soils

In the present work we report the results obtained with a methodology based on direct coupling of a headspace generator to a mass spectrometer for the identification of different types of petroleum crudes in polluted soils. With no prior treatment, the samples are subjected to the headspace generation process and the volatiles generated are introduced directly into the mass spectrometer, thereby obtaining a fingerprint of volatiles in the sample analysed. The mass spectrum corresponding to the mass/charge ratios (m/z) contains the information related to the composition of the headspace and is used as the analytical signal for the characterization of the samples. The signals obtained for the different samples were treated by chemometric techniques to obtain the desired information. The main advantage of the proposed methodology is that no prior chromatographic separation and no sample manipulation are required. The method is rapid, simple and, in view of the results, highly promising for the implementation of a new approach for oil spill identification in soils. Figure PCA score plots illustrate clear discrimination of types of crude oil in polluted soil samples (e.g. results are shown for vertisol)     

Instrumental modification intended to save time,and volumes of sample and reagent solutions,in the atomic fluorescence spectrometric determination of mercury

Use of small membrane pumps, instead of peristaltic pumps, to introduce sample and reagent solutions into the spectrometer has several advantages in atomic fluorescence spectrometric determination of mercury. This simple modification results in a substantial saving in the time required for the measurements and so 90% of reagent solution volumes and 95% of sample solution volumes are saved, with a consequent decrease in the volume of waste generated. The sampling frequency is almost tripled, with no deterioration in sensitivity, which is similar to that obtained by use of peristaltic pumps. The relative standard deviation for ten consecutive measurements of a 1 μg L⁻¹ mercury solution was approximately 2%. Figure Small membrane pumps for the atomic fluorescene spectro metric determination of mercury     

Chiral ligand-exchange chromatography of amino acids using porous graphitic carbon coated with a dinaphthyl derivative of neamine

In this paper, we describe the preparation and the evaluation of a porous graphitic carbon (PGC) column coated with a new dinaphthyl derivative of neamine for chiral ligand-exchange (LE) chromatography. It was shown that the graphitic surface/dinaphthyl anchor system efficiently (1.15 μmol/m²) and stably (three months of intensive use) adsorbs the neamine template onto the chromatographic support. The resulting coated PGC stationary phase showed appreciable LE-based enantioselective properties towards several native amino acids. Chromatographic separation of methionine enantiomers using a dinaphtyl neamine-based ligand-exchange chiral stationary phase     

Modified semi-rotating cryogenic modulator for comprehensive two-dimensional gas chromatography

A previously constructed semi-rotating cryogenic modulator was modified for comprehensive two-dimensional gas chromatography (GC×GC). The retention time repeatability was improved by replacing the modulator control program unit with a new system. Peak widths obtained with the modified modulator were comparable with those obtained with the previous modulator and other modulator types. The modulator was easy to construct and it can be installed in any commercial GC system. The constructed GC×GC–FID system and data obtained by gas chromatography–mass spectrometry (GC–MS) were used for identification of unknowns in forest aerosol samples. Figure A semi-rotating cryogenic modulator in which modulation is based on two-step cryogenic trapping with continuously flowing carbon dioxide has been developed for comprehensive two-dimensional gas chromatography     

Development of an automated system for isolation and purification of humic substances

Characterization of humic substances (HS) in environmental samples generally involves labor-intensive and time-consuming isolation and purification procedures. In this paper, the development of an automated system for HS isolation and purification is described. The novelty of the developed system lies in the way the multiple liquids and columns used in the isolation/purification procedure are handled in both forward and back-elution mode by solenoid valves. The automated procedure significantly reduces the total throughput time needed, from 6–7 days to 48 h, and the amount of labor to obtain purified HS for further characterization. Chemical characterization of purified HS showed that results were in good agreement with previously published values for HS from a variety of sources, including the IHSS standard HS collection. It was also shown that the general properties of HS were consistent among the different source materials (soil, waste, aquatic) used in this study. The developed system greatly facilitates isolation and characterization of HS and reduces the risk of potential (time-dependent) alteration of HS properties in the manual procedure. Figure Photograph of the rear (left) and front (right) of the automated system for the isolation and purification of humic substances Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Iron fractionation for corrosion products from natural gas pipelines by continuous-flow sequential extraction

The forms and quantities of iron species in corrosion product samples from natural gas pipelines were examined, using a continuous-flow sequential extraction system. Sequential extraction consists of four steps that dissolve water soluble iron (FeSO₄), acid soluble iron (FeCO₃), reducible iron (Fe-(oxyhydr)oxides) and oxidisable iron (FeS₂) fractions, respectively. Selectivity of extracting reagents for particular iron species was evaluated by determination of co-extracted anions, using ion chromatography, and evolved CO₂, using indirect flame atomic absorption spectrometer (FAAS). Iron was found predominantly in the reducible fraction (61–99%), indicating that Fe-(oxyhydr)oxides are the major constituents of the corrosion products.      

Quantitative biomarker assay with microfluidic paper-based analytical devices

This article describes the use of microfluidic paper-based analytical devices (μPADs) to perform quantitative chemical assays with internal standards. MicroPADs are well-suited for colorimetric biochemical assays; however, errors can be introduced from the background color of the paper due to batch difference and age, and from color measurement devices. To reduce errors from these sources, a series of standard analyte solutions and the sample solution are assayed on a single device with multiple detection zones simultaneously; an analyte concentration calibration curve can thus be established from the standards. Since the μPAD design allows the colorimetric measurements of the standards and the sample to be conducted simultaneously and under the same condition, errors from the above sources can be minimized. The analytical approach reported in this work shows that μPADs can perform quantitative chemical analysis at very low cost.