Exploring the Vibrational Side of Spin‐Phonon Coupling in Single‐Molecule Magnets via 161Dy Nuclear Resonance Vibrational Spectroscopy

Synchrotron‐based nuclear resonance vibrational spectroscopy (NRVS) using the Mössbauer isotope ¹⁶¹Dy has been employed for the first time to study the vibrational properties of a single‐molecule magnet (SMM) incorporating Dy^III, namely [Dy(Cy₃PO)₂(H₂O)₅]Br₃?2 (Cy₃PO)?2 H₂O ?2 EtOH. The experimental partial phonon density of states (pDOS), which includes all vibrational modes involving a displacement of the Dy^III ion, was reproduced by means of simulations using density functional theory (DFT), enabling the assignment of all intramolecular vibrational modes. This study proves that ¹⁶¹Dy NRVS is a powerful experimental tool with significant potential to help to clarify the role of phonons in SMMs.     

Vibrational dynamics of poly(L‐histidine)

Normal mode analysis and their dispersion for poly(L ‐histidine) (PLH) are reported by using Urey Bradley force field and Fourier Transform IR PLH exists in the α helical form. There are 17 atoms in one residue, which gives rise to 51 dispersion curves. To simplify, it is convenient to discuss the normal frequencies under three separate heads namely amide modes, side chain modes, and mixed mode. The calculated frequencies are found to be in reasonably good agreement with the Fourier Transform IR spectra. There exists exchange of character, attraction, and repulsion for selective dispersion curves with change in the phase value. Contributions to the heat capacity were calculated separately for the side chain, backbone, and mixed modes. The major contribution comes from the side chain and mixed modes. The sum of these three contributions gives the total heat capacity, which is in agreement with the reported experimental value. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 128–137, 2010     

DFT‐Aided Vibrational Circular Dichroism Spectroscopy Study of (−)‐S‐cotinine

The implementation of a strategy comprising the use of vibrational circular dichroism spectroscopy and DFT calculations allows determination of the solution‐state conformational distribution in (?)‐S‐cotinine, giving further proof of the extra conformer‐discriminating potential of this experimental technique, which may offer unique molecular fingerprints of subtly dissimilar molecular conformers of chiral samples. Natural bond orbital electronic structure calculations of the rotational barrier height between the two main conformers of the species indicate that hyperconjugative effects are the key force governing the conformational equilibrium. The negligible effect of the solvent’s polarity over both structure and conformational energy profile supports this result.     

Matrix Isolation‐Vibrational Circular Dichroism Spectroscopy of 3‐Butyn‐2‐ol and its Binary Aggregates

Vibrational circular dichroism (VCD) spectroscopy has a unique specificity to chirality and is highly sensitive to the conformational equilibria of chiral molecules. On the other hand, the matrix‐isolation (MI) technique allows substantial control over sample compositions, such as the sample(s)/matrix ratio and the ratio among different samples, and yields spectra with very narrow bandwidths. We combined VCD spectroscopy with the MI technique to record MI‐VCD and MI‐vibrational absorption spectra of 3‐butyn‐2‐ol at different MI temperatures, which allowed us to investigate the conformational distributions of its monomeric and binary species. Good mirror‐imaged MI‐VCD spectra of opposite enantiomers were achieved. The related conformational searches were performed for the monomer and the binary aggregate and their vibrational absorption and VCD spectra were simulated. The well‐resolved experimental MI‐VCD bands provide the essential mean to assign the associated vibrational absorption spectral features correctly to a particular conformation in case of closely spaced bands. By varying the matrix temperature, we show that one can follow the self‐aggregation process of 3‐butyn‐2‐ol and confidently correlate the MI‐VCD spectral features with those obtained for a 0.1 M CCl₄ solution and as a neat liquid at room temperature. Comparison of the aforementioned experimental VCD spectra shows conclusively that there is a substantial contribution from the 3‐butyn‐2‐ol aggregate even at 0.1 M concentration. This spectroscopic combination will be powerful for studying self‐aggregation of chiral molecules, and chirality transfer from a chiral molecule to an interacting achiral molecule and in electron donor–acceptor chiral complexes.     

Small‐Angle X‐Ray Scattering and Near‐Infrared Vibrational Spectroscopy of Water Confined in Aerosol‐OT Reverse Micelles

The state of water confined in Aerosol‐OT–hydrocarbon–water reverse micelles with cyclohexane, n‐pentane, n‐octane, and n‐dodecane as apolar solvents is investigated by small‐angle X‐ray scattering and near‐infrared vibrational spectroscopy of the first overtone of the OH stretching mode of water. The experiments focus on water/AOT molecular ratios W₀=2–20, where water is strongly affected by the confinement and surface–water interactions. The pair‐distance distribution functions derived from the small‐angle scattering patterns allows a detailed characterization of the topology of these systems, and they indicate deviations from monodisperse, spherical water pools for some of these hydrocarbon systems. In contrast to a common assumption, the pool size does not scale linearly with W₀ in going from dry reverse micelles (W₀→0) to essentially bulk‐like water (W₀>20). The first overtone of the OH‐stretching vibration exhibits highly structured spectra, which reveal significant changes in the hydrogen bonding environment upon confinement. The spectra are rationalized by a core/shell model developed by Fayer and co‐workers. This model subdivides water into core water in the interior of the micelle and shell water close to the interface. Core water is modelled by the properties of bulk water, while the properties of shell water are taken to be those of water at W₀=2. The model allows the representation of the spectra at any hydration level as a linear combination of the spectra of core and shell water. Different approaches are critically reviewed and discussed as well.     

Visualization of Vibrational Modes in Real Space by Tip‐Enhanced Non‐Resonant Raman Spectroscopy

We present a general theory to model the spatially resolved non‐resonant Raman images of molecules. It is predicted that the vibrational motions of different Raman modes can be fully visualized in real space by tip‐enhanced non‐resonant Raman scattering. As an example, the non‐resonant Raman images of water clusters were simulated by combining the new theory and first‐principles calculations. Each individual normal mode gives rise its own distinct Raman image, which resembles the expected vibrational motions of the atoms very well. The characteristics of intermolecular vibrations in supermolecules could also be identified. The effects of the spatial distribution of the plasmon as well as nonlinear scattering processes were also addressed. Our study not only suggests a feasible approach to spatially visualize vibrational modes, but also provides new insights in the field of nonlinear plasmonic spectroscopy.     

Vibrational spectroscopic investigation of poly(p‐phenylene sulfide)

Poly(p‐phenylene sulfide) (PPS) is an important polymer of engineering interest particularly useful in the electronics and automotive industries. Normal mode analysis including phonon dispersion has been performed to understand completely the vibrational spectra of this polymer. Various characteristic features of the dispersion curves have been reported. Crossing/Repulsion between various pairs of modes at certain phase values have been explained as arising due to internal symmetry in the energy momentum space. The heat capacity is calculated as a function of temperature via density‐of‐states in the range 220–360 K. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 47: 2353–2367, 2009     

Elucidation of the CO‐Release Kinetics of CORM‐A1 by Means of Vibrational Spectroscopy

CO‐releasing molecules (CORMs) are developed for investigations of the interaction between the signaling molecule carbon monoxide (CO) and cells or tissue. Prior to their application these molecules must be fully characterized with respect to their CO‐release mechanism. One widely used CORM for biological application is sodium boranocarbonate (CORM‐A1), which shows pH‐dependent CO liberation. The complete reaction mechanism of CORM‐A1 is not fully understood yet. Therefore, in this contribution time‐resolved gas‐phase IR spectroscopy is used to monitor the headspace above decaying CORM‐A1 solutions at four different pH values (5.8 to 7.4). Borane carbonyl is found as an intermediate in the gas phase, which is formed during CORM degradation and further decays to CO. Concentration profiles of a pseudoconsecutive first‐order reaction are successfully fitted to specific band areas of the measured gas‐phase spectra, and the rate constants are obtained. The production of borane carbonyl is strongly pH dependent (half‐lives between 5 and 106 min), whereas the decay of borane carbonyl in the gas phase is nearly constant with a half‐life of about 33 min. The ratio of liberated CO molecules per CORM‐A1 is determined to be 0.91±0.09, and boric acid is identified as further end product.     

Ultrafast Exciton Self‐Trapping and Delocalization in Cycloparaphenylenes: The Role of Excited‐State Symmetry in Electron‐Vibrational Coupling

Upon photon absorption, π‐conjugated organics are apt to undergo ultrafast structural reorganization via electron‐vibrational coupling during non‐adiabatic transitions. Ultrafast nuclear motions modulate local planarity and quinoid/benzenoid characters within conjugated backbones, which control primary events in the excited states, such as localization, energy transfer, and so on. Femtosecond broadband fluorescence upconversion measurements were conducted to investigate exciton self‐trapping and delocalization in cycloparaphenylenes as ultrafast structural reorganizations are achieved via excited‐state symmetry‐dependent electron‐vibrational coupling. By accessing two high‐lying excited states, one‐photon and two‐photon allowed states, a clear discrepancy in the initial time‐resolved fluorescence spectra and the temporal dynamics/spectral evolution of fluorescence spectra were monitored. Combined with quantum chemical calculations, a novel insight into the effect of the excited‐state symmetry on ultrafast structural reorganization and exciton self‐trapping in the emerging class of π‐conjugated materials is provided.     

Self‐Assembled Au Nanoparticles as Substrates for Surface‐Enhanced Vibrational Spectroscopy: Optimization and Electrochemical Stability

Three‐dimensional nanostructured metallic substrates for enhanced vibrational spectroscopy are fabricated by self‐assembly. Nanostructures consisting of one to 20 depositions of 13 nm‐diameter Au nanoparticles (NPs) on Au films are prepared and characterized by means of AFM and UV/Vis reflection–absorption spectroscopy. Surface‐enhanced polarization modulation infrared reflection–absorption spectroscopy (PM‐IRRAS) is observed from Au NPs modified by the probe molecule 4‐hydroxythiophenol. The limitation of this kind of substrate for surface‐enhanced PM‐IRRAS is discussed. The surface‐enhanced Raman scattering (SERS) from the same probe molecule is also observed and the effect of the number of Au‐NP depositions on the SERS efficiency is studied. The SERS signal from the probe molecule maximizes after 11 Au‐NP depositions, and the absolute SERS intensities from different batches are reproducible within 20 %. In situ electrochemical SERS measurements show that these substrates are stable within the potential window between ?800 and +200 mV (vs. Ag/AgCl/sat. Cl^?).     

A Vibrational Raman Optical Activity Study of 1,1′‐Binaphthyl Derivatives

The Raman polarized and vibrational Raman optical activity (VROA) backward spectra are simulated for a series of 2,2′‐substituted 1,1′‐binaphthyl compounds presenting a variety of torsion angles between the two naphthalene rings. The substitution prevents free rotation along this torsion angle and the chirality of these compounds is thus called atropisomerism. However, the rotation is not completely frozen so that two different conformations, namely cisoid and transoid, are found and their Raman and VROA signatures are studied. As expected, the Raman spectra are not very sensitive whereas the VROA spectra present more complex patterns, which evolve as a function of the torsion angle between the two naphthalene groups. In particular, our analysis shows that some modes can be used as a probe for the determination of the torsion angle of these molecules in solution. The contributions of both invariants to the VROA backward intensity are also assessed.     

Molecular Structure,Vibrational Spectra,and Hydrogen Bonding of the Ionic Liquid 1‐Ethyl‐3‐methyl‐1H‐imidazolium Tetrafluoroborate

The IR and Raman spectra and conformations of the ionic liquid 1‐ethyl‐3‐methyl‐1H‐imidazolium tetrafluoroborate, [EMIM] [BF₄] ( 6 ), were analyzed within the framework of scaled quantum mechanics (SQM). It was shown that SQM successfully reproduced the spectra of the ionic liquid. The computations revealed that normal modes of the EMIM⁺?BF ion pair closely resemble those of the isolated ions EMIM⁺ and BF , except for the antisymmetric BF stretching vibrations of the anion, and the out‐of‐plane and stretching vibrations of the H? C(2) moiety of the cation. The most plausible explanation for the pronounced changes of the latter vibrations upon ion‐pair formation is the H‐bonding between H? C(2) and BF . However, these weak H‐bonds are of minor importance compared with the Coulomb interactions between the ions that keep them closely associated even in dilute CD₂Cl₂ solutions. According to the ‘gas‐phase’ computations, in these associates, the BF anion is positioned over the imidazolium ring of the EMIM⁺ cation and has short contacts not only with the H? C(2) of the latter, but also with a proton of the Me? N(3) group.     

Identifying Protein β‐Turns with Vibrational Raman Optical Activity

β‐turns belong to the most important secondary structure elements in proteins. On the basis of density functional calculations, vibrational Raman optical activity signatures of different types of β‐turns are established and compared as well as related to other signatures proposed in the literature earlier. Our findings indicate that there are much more characteristic ROA signals of β‐turns than have been hitherto suggested. These suggested signatures are, however, found to be valid for the most important type of β‐turns. Moreover, we compare the influence of different amino acid side chains on these signatures and investigate the discrimination of β‐turns from other secondary structure elements, namely α‐ and 3₁₀‐helices.     

Vibrational dynamics and heat capacity in poly(L‐lactic acid)

Poly(L ‐lactic acid) (PLLA) (? CH(CH₃) ? COO? )_n is a biodegradable polymer, which exhibits many applications in the biomedical field and where thermoplastics are employed. A comprehensive study of the normal modes and their dispersion in PLLA using Wilson′s GF matrix method as modified by Higgs is being reported. Assignments of calculated normal modes have been made and characteristic features of dispersion curves are discussed. Heat capacity has been calculated via density‐of‐states using Debye relation in the temperature range 10–250 K, which is in fairly good agreement with the experimental data. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 175–182, 2010     

Molecular Wires in Single‐Molecule Junctions: Charge Transport and Vibrational Excitations

We investigate the effect of vibrations on the electronic transport through single‐molecule junctions, using the mechanically controlled break junction technique. The molecules under investigation are oligoyne chains with appropriate end groups, which represent both an ideally linear electrical wire and an ideal molecular vibrating string. Vibronic features can be detected as satellites to the electronic transitions, which are assigned to longitudinal modes of the string by comparison with density functional theory data.