Mechanoresponsive Self-Assembled Perylene Bisimide Films

In this work, self-assembled amino-acid appended perylene bisimides (PBIs) have been studied that when processed into thin films change their resistivity in response to being bent. The PBIs assemble into structures in water and form thin films upon drying. These normally delicate thin films can be tolerant to bending, depending on the aggregates they form. Furthermore, the films then reversibly change their resistivity in response to this mechanical stimulus. This change is proportional to the degree of bending of the film giving them the potential to be used quantitatively to measure mechanical movement, such as in wearable devices.     

Rainbow Perylene Monoimides: Easy Control of Optical Properties

Perylene dyes have been widely used as photoreceptors in organic photovoltaics because of their outstanding photo‐, thermal and chemical stability as well as their excellent photophysical properties. Herein we describe a novel generation of perylene dyes based on N‐(2,6‐diisopropylphenyl)‐perylene‐3,4‐dicarboximide. The optical properties of these novel perylenes can be finely tuned via the substituents in the 1‐, 6‐ and 9‐positions of the perylene core. The facile synthesis, tunable orbital and absorption properties, and electrochemical potentials help us to design efficient perylene sensitizers for solar‐cell applications.     

Selective optical trapping and deposition of polymer and aromatic molecules from binary mixed solution

We have demonstrated size-selective optical trapping and deposition of polymer and aromatic molecules from binary mixed solution. As a near-infrared laser beam is tightly focused in polystyrene and perylene mixed solution and dropped on a glass substrate, a molecular assembly is deposited at the laser focus and fixed on the substrate. The fluorescence spectrum of the deposited microassembly depends on the laser power; perylene monomer fluorescence is dominant in the case of high laser power, whereas excimer emission of perylene crystal is observed in the case of low laser power. This suggests that polystyrene molecules are preferentially deposited by focusing a higher laser power so that the ratio of polystyrene and perylene in the assembly can be controlled by laser power. This mechanism can be explained in view of the molecular size selectivity in optical trapping.     

The Regioselectivity of (Dimethylvinylidene)carbene Directed by Aromatic Ring upon the Addition into Aryl Alkenes in the Presence of Other Olefins

Regioselective cycloaddition of (dimethylvinylidene)carbene (1) into aryl alkenes in the presence of other olefins is reported. The reaction is presumably controlled by the phenyl group, which forms an aromatic π-complex with the carbene C-3 orbital, followed by the selective addition of 1 to the closest phenyl-substituted double bond. Also, this selectivity is assumed to be attributed to delocalization of aromatic π electrons which increases the electron density of the conjugated carbon-carbon double bond, thus leading to the facile addition of vinylidenecarbene.     

Boat and chair benzenes incorporated in cyclophanes

Various modes of the out-of-plane deformation of a benzene ring have been examined theoretically the MINDO/2 methods. Deformation to the boat conformation is predicted to be more facile than that to the half-boat or the chair conformation as observed in triple-layered[2.2]-metacyclophanes. The energy partitioning analysis reveals that a minimal loss of resonance energy at the gunwale of benzene boats appears to be responsible for the ease of boat deformations. The out-of-plane bending of the H atom at the bow of die benzene boats is coupled to the displacement of the H at the gunwale in such a way that the torsion of the bond between the bow and gunwale C atoms may be kept as small as possible.     

Electronic and magnetic characteristics of polycyclic aromatic hydrocarbons with factorizable Kekulé structure counts

The Kekule? structure count (K) for some types of polycyclic aromatic hydrocarbons (PAHs), such as fluoranthene and perylene, can be factorized into the product of those for two or more aromatic subunits. The ring-current map for these PAHs placed in a perpendicular magnetic field exhibits a substantial localization on aromatic subunits. We found that such localization of π circulation is a characteristic of fairly small K-factorizable species in the neutral electronic state. Even in such a case, no single π molecular orbital (πMO) is associated with localized π circulation. Apparent localization of π circulation is caused by the superposition of currents induced by all occupied πMOs. π circulation is less localized in larger K-factorizable species.     

One-step catalyst-free generation of carbon nanospheres via laser-induced pyrolysis of anthracene

Carbon nanospheres with diameters between 100 and 400 nm have been successfully synthesized via low-power laser-assisted pyrolysis of anthracene in a nitrogen atmosphere. The developed facile route yields homogeneous nanoparticles and requires no supplementary carbon feedstock or catalyst. The sharp thermal gradient afforded by the laser results in two kinds of carbon products that differ in crystallinity and mean particle size. Our detailed findings point to the carbon nanospheres being comprised of small-unclosed aromatic layers that are connected together by simple organic linkers. C-H bonds in the anthracene molecules are partially broken by the laser beam energy, and as the newly created large radicals aggregate, carbon nanospheres are formed.     

Energy transfer in calixarene-based cofacial-positioned perylene bisimide arrays

The synthesis of multichromophoric perylene bisimide-calix[4]arene arrays with up to five perylene units (containing orange, violet, and green perylene bisimide chromophores) and of monochromophoric model compounds was achieved by subsequent imidization of mono-Boc functionalized calix[4]arene linkers with three different types of perylene bisimide dye units. The optical properties of all compounds were studied with UV/vis absorption and steady state and time-resolved fluorescence spectroscopy. Upon excitation of the inner orange dye at 490 nm of array 3, strong fluorescence emission of the outer green perylene bisimide (PBI) chromophore at 744 nm is observed. The fluorescence excitation spectra of compounds 3 and 4 (lambdadet = 850 nm) show all absorption bands of the parent chromophores (e.g., all perylene units contribute to the emission from S1 state of the green PBI). Thus, the fluorescence emission and excitation spectra as well as time-resolved data of fluorescence lifetimes in the absence (tauD = 5.1 ns) and in the presence of an acceptor (tauDA = 0.8 ns) suggest efficient energy transfer processes between the perylene bisimide dye units. For the bichromophoric array 4, the energy transfer rate is calculated to a value of 1.05 x 109 s-1. These results demonstrate highly efficient energy transfer in cofacially assembled dye arrays.     

Chemistry at boron: synthesis and properties of red to near-IR fluorescent dyes based on boron-substituted diisoindolomethene frameworks

A general method for the synthesis of difluorobora-diisoindolomethene dyes with phenyl, p-anisole, or ethyl-thiophene substituents has been developed. The nature of the substituents allows modulation of the fluorescence from 650 to 780 nm. Replacement of the fluoro ligands by ethynyl-aryl or ethyl residues is facile using Grignard reagents. Several X-ray molecular structures have been determined, allowing establishment of structure-fluorescence relationships. When the steric crowding around the boron center is severe, the aromatic substituents α to the diisoindolomethene nitrogens are twisted out of coplanarity, and hypsochromic shifts are observed in the absorption and emission spectra. This shift reached 91 nm with ethyl substituents compared to fluoro groups. When ethynyl linkers are used, the core remains flat, and a bathochromic shift is observed. All the fluorophores exhibit relatively high quantum yields for emitters in the 650-800 nm region. When perylene or pyrene residues are connected to the dyes, almost quantitative energy transfer from them to the dye core occurs, providing large virtual Stokes shifts spanning from 8000 to 13,000 cm(-1) depending on the nature of the dye. All the dyes are redox active, providing the Bodipy radical cation and anion in a reversible manner. Stepwise reduction or oxidation to the dication and dianion is feasible at higher potentials. We contend that the present work paves the way for the development of a new generation of stable, functionalized luminophores for bioanalytical applications.     

New Explanation for Ligand Bending in Transition Metal Tris(dithiolate) Complexes

The results of Fenske-Hall molecular orbital calculations are reported for the trigonal prismatic complexes Mo(S(2)C(2)H(2))(3) and Mo(S(2)C(6)H(4))(3). Both complexes exhibit a bend of the S-C-C-S ligand plane away from the S-Mo-S plane. A series of calculations which systematically follow the changes in electronic structure as the bend angle alpha is varied between 0 and 30 degrees indicates that the bend can be attributed to a second order Jahn-Teller distortion. The driving force for this distortion, which allows mixing between a set of ligand pi orbitals and the metal d(z)()()2 orbital, should be greatest for d(0) systems. In these systems the bent geometry leads to the stabilization of the doubly occupied HOMO. The driving force for ligand bending should be lower in systems having more or fewer electrons (e.g. Re(S(2)C(2)Ph(2))(3) or V(S(2)C(2)Ph(2))(3), respectively). While the steric bulk of the dithiolate ligands in the latter complexes may also influence the degree of ligand bending, this is probably a secondary effect.     

MNDO Calculations on [n]metacyclophanes

MNDO calculations on [n]metacyclophanes and a variety of related compounds are reported. An analysis of the strain, imposed by the oligomethylene bridge, and its distribution over the distorted benzene ring and the oligomethylene bridge is presented. The effect of strain and bending of the benzene ring on aromatic delocalization is investigated by a comparison of ΔH^o_f of the bent benzene systems with that of a correspondingly bent, but localized 1,3,5-cyclohexatriene. The results indicate that, even in the case of the highly bent [4]metacyclophane ( 1a ), localization is unfavorable by about 10 kcal/mol.     

Highly bent crystals formed by restrained π-stacked columns connected via alkylene linkers with variable conformations

A reproducible formation of strongly bent crystals was accomplished by structurally restraining macrocyclic π-conjugated molecules. The model π-units consist of two 9,10-bis(2-thienylethynyl)anthracenes with a strong propensity for stacking, which are connected in a macrocyclic fashion via two alkylene linkers. The correlation between the crystalline morphology and the macrocyclic structures restrained by a variety of flexible alkylene linker combinations was systematically studied. Bent crystals were obtained only with specific alkylene linkers of appropriate chain length. The alkylene linkers can adopt different conformations in the crystal packing, so as to fill voids within the macrocycle. The ability to form several similar molecular structures with different alkylene conformations gives rise to contaminations of different crystalline phases within a single crystal, and it is these phase contaminations which are responsible for the bending of the crystals.     

Spermine‐Functionalized Perylene Bisimide Dyes—Highly Fluorescent Bola‐Amphiphiles in Water

A series of four spermine‐functionalized perylene bisimide dyes without linkers ( 1 ) and with linkers ( 2 – 4 ) between the chromophore and the polyamine was synthesized. Protonation of the spermine moieties resulted in the formation of highly water‐soluble dyes with up to six positively charged ammonium ions. The aggregation behavior of these strongly fluorescent bola‐amphiphiles was studied in pure water as solvent by UV/Vis and fluorescence spectroscopy, and an astonishingly high fluorescence quantum yield of up to Φ_fl=0.90 was observed for PBI 1 . Atomic force microscopy and transmission electron microscopy were applied for the visualization of the aggregates on surfaces. Molecular modeling studies were performed by force‐field calculations to explore the aggregate morphologies, which also provided valuable information on the influence of the additional alkylcarbonyl linkers. Our detailed spectroscopic and microscopic investigations revealed that the excellent optical properties of perylene bisimide chromophores can be used even in pure deionized water if their aggregation is efficiently suppressed.     

Control over self-assembly through reversible charging of the aromatic building blocks in photofunctional supramolecular fibers

Self-assembling systems, whose structure and function can be reversibly controlled in situ are of primary importance for creating multifunctional supramolecular arrays and mimicking the complexity of natural systems. Herein we report on photofunctional fibers self-assembled from perylene diimide cromophores, in which interactions between aromatic monomers can be attenuated through their reduction to anionic species that causes fiber fission. Oxidation with air restores the fibers. The sequence represents reversible supramolecular depolymerization-polymerization in situ and is accompanied by a reversible switching of photofunction.     

Cytosine methylation regulates DNA bendability depending on the curvature

Cytosine methylation plays an essential role in many biological processes, such as nucleosome inactivation and regulation of gene expression. The modulation of DNA mechanics may be one of the regulatory mechanisms influenced by cytosine methylation. However, it remains unclear how methylation influences DNA mechanics. Here, we show that methylation has contrasting effects on the bending property of dsDNA depending on DNA curvature. We directly applied bending force on 30 base pairs of dsDNA using a D-shaped DNA nanostructure and measured the degree of bending using single-molecule fluorescence resonance energy transfer without surface immobilization. When dsDNA is weakly bent, methylation increases the stiffness of dsDNA. The stiffness of dsDNA increased by approximately 8% with a single methylation site for 30 bp dsDNA. When dsDNA is highly bent by a strong force, it forms a kink, i.e., a sharp bending of dsDNA. Under strong bending, methylation destabilizes the non-kink form compared with the kink form, which makes dsDNA near the kink region apparently more bendable. However, if the kink region is methylated, the kink form is destabilized, and dsDNA becomes stiffer. As a result, methylation increases the stiffness of weakly bent dsDNA and concurrently can promote kink formation, which may stabilize the nucleosome structure. Our results provide new insight into the effect of methylation, showing that cytosine methylation has opposite effects on DNA mechanics depending on its curvature and methylation location.

D-shaped DNA is used to observe dsDNA bending mechanics. Cytosine methylation increases the intrinsic stiffness of dsDNA. Under strong bending, methylation stabilizes or destabilizes a kink form depending on methylation sites.     

High-resolution electron spectroscopy, preferential metal-binding sites, and thermochemistry of lithium complexes of polycyclic aromatic hydrocarbons

Polycyclic aromatic hydrocarbons are model systems for studying the mechanisms of lithium storage in carbonaceous materials. In this work, Li complexes of naphthalene, pyrene, perylene, and coronene were synthesized in a supersonic metal-cluster beam source and studied by zero-electron-kinetic-energy (ZEKE) electron spectroscopy and density functional theory calculations. The adiabatic ionization energies of the neutral complexes and frequencies of up to nine vibrational modes in the singly charged cations were determined from the ZEKE spectra. The metal-ligand bond energies of the neutral complexes were obtained from a thermodynamic cycle. Preferred Li∕Li(+) binding sites with the aromatic molecules were determined by comparing the measured spectra with theoretical calculations. Li and Li(+) prefer the ring-over binding to the benzene ring with a higher π-electron content and aromaticity. Although the ionization energies of the Li complexes show no clear correlation with the size of the aromatic molecules, the metal-ligand bond energies increase with the extension of the π-electron network up to perylene, then decrease from perylene to coronene. The trends in the ionization and metal-ligand bond dissociation energies of the complexes are discussed in terms of the orbital energies, local quadrupole moments, and polarizabilities of the free ligands and the charge transfer between the metal atom and aromatic molecules.     

The local anaesthetic tetracaine as a quencher of perylene fluorescence in micelles

At neutral pH the local anaesthetic tetracaine hydrochloride quenches the fluorescence of the lipophilic dye perylene incorporated into non-ionic micelles. The process follows the Stern-Volmer equation, suggesting that quenching occurs through encounter of fluorophore and quencher. As the pH is lowered from 5 to 1, the apparent quenching constant decreases sigmoidally, the midpoint of the curve being at pH 2.3, close to the pK value characterizing the ionization of the anaesthetic aromatic butylamino group. Quenching is completely reversed below pH 1. These results show that the ability of tetracaine to quench the fluorescence of perylene incorporated into micelles depends on the absence of charge on its aromatic amine. Quenching was also studied in homogeneous dioxane-water solution. In this system the quenching constant also decreases sigmoidally as the pH is lowered. The infection point of the curve is nearly coincident with the pK of tetracaine butylamino group in the same partially non-aqueous medium. Protonation of this group induces 60% reversal of the quenching, suggesting that the main mechanism of fluorescence extinction could be the electron transfer from unprotonated tetracaine aromatic amine to perylene in the excited state. However, an additional process which remains operative even when such an amino group is positively charged must also be involved. It can be concluded that the complete reversal of tetracaine quenching of perylene fluorescence in micelles induced by low pH is due to the inability of the anaesthetic to become partitioned into micelles upon protonation of its aromatic amine. In contrast, at neutral pH the local anaesthetic is able to reach the micelle non-polar core where perylene is located. This is consistent with the models, suggesting that the membrane-bound tetracaine assumes a rod-like configuration parallel to the surface normal with the aromatic butylamino group located into a highly hydrophobic region.     

Comparison of the electronic structure of different perylene‐based dye‐aggregates

Aggregates of functionalized polycyclic aromatic molecules like perylene derivatives differ in important optoelectronic properties such as absorption and emission spectra or exciton diffusion lengths. Although those differences are well known, it is not fully understood if they are caused by variations in the geometrical orientation of the molecules within the aggregates, variations in the electronic structures of the dye aggregates or interplay of both. As this knowledge is of interest for the development of materials with optimized functionalities, we investigate this question by comparing the electronic structures of dimer systems of representative perylene‐based chromophores. The study comprises dimers of perylene, 3,4,9,10‐perylene tetracarboxylic acid bisimide (PBI), 3,4,9,10‐perylene tetracarboxylic acid dianhydride (PTCDA), and diindeno perylene (DIP). Potential energy curves (PECs) and characters of those electronic states are investigated which determine the optoelectronic properties. The computations use the spin‐component‐scaled approximate coupled‐cluster second‐order method (SCS‐CC2), which describes electronic states of predominately neutral excited (NE) and charge transfer (CT) character equally well. Our results show that the characters of the excited states change significantly with the intermolecular orientation and often represent significant mixtures of NE and CT characters. However, PECs and electronic structures of the investigated perylene derivatives are almost independent of the substitution patterns of the perylene core indicating that the observed differences in the optoelectronic properties mainly result from the geometrical structure of the dye aggregate. It also hints at the fact that optical properties can be computed from less‐substituted model compounds if a proper aggregate geometry is chosen. © 2012 Wiley Periodicals, Inc.     

Simple and accurate computations of solvatochromic shifts in pi --> pi* transitions of aromatic chromophores.

A new approach is introduced for calculating the spectral shifts of the most bathochromic pi --> pi* transition of an aromatic chromophore in apolar environments. As an example, perylene in solid and liquid n-alkane matrixes was chosen, and all shifts were calculated relative to one well-defined solid-inclusion system. It was shown that a simple two-level treatment of the solute using Hückel theory yields spectral shifts in excellent agreement with experimental results for the most prominent inclusion sites of perylene in solid n-alkane surroundings and for the dilute solutions in liquid n-alkanes. The idea is general enough to be applied to any aromatic chromophore in a nonpolar solvent matrix. In contrast to earlier treatments, this approach is based on geometry- and environment-dependent polarizabilities, employs an r(-4) dependence for the dispersion energy, and is conceptually very simple and computationally very efficient.     

Molecular layer-by-layer self-assembly of water-soluble perylene diimides through pi-pi and electrostatic interactions

A layer-by-layer deposition process has been carried out for two oppositely charged water-soluble perylene diimide dyes without the use of intervening polyelectrolyte layers. The strong pi-pi interactions between the perylene moieties help stabilize the layers and simultaneously diminish the fluorescence quantum yield of the array without strongly affecting the absorption or fluorescence spectra. There is an alternation of fluorescence intensity according to which perylene species is on the outer layer, which is interpreted as the effect of facile energy transfer between the perylenes.