Ultrafast excited-state dynamics of RNA and DNA C tracts

The excited-state dynamics of the RNA homopolymer of cytosine and of the 18-mer (dC)₁₈ were studied by steady-state and time-resolved absorption and emission spectroscopy. At pH 6.8, excitation of poly(rC) by a femtosecond UV pump pulse produces excited states that decay up to one order of magnitude more slowly than the excited states formed in the mononucleotide cytidine 5′-monophosphate under the same conditions. Even slower relaxation is observed for the hemiprotonated, self-associated form of poly(rC), which is stable at acidic pH. Transient absorption and time-resolved fluorescence signals for (dC)₁₈ at pH 6.8 are similar to ones observed for poly(rC) near pH 4, indicating that hemiprotonated structures are found in DNA C tracts at neutral pH. In both systems, there is evidence for two kinds of emitting states with lifetimes of 100 ps and slightly more than 1 ns. The former states are responsible for the bulk of emission from the hemiprotonated structures. Evidence suggests that slow electronic relaxation in these self-complexes is the result of vertical base stacking. The similar signals from RNA and DNA C tracts suggest a common base-stacked structure, which may be identical with that of i-motif DNA.     

Excited state intramolecular proton transfer in a new o-hydroxy Schiff base in non polar solvents at room temperature and 77 K

A new orthohydroxy Schiff base, 7-ethylsalicylidenebenzylamine (ESBA) has been synthesised. The excited state intramolecular proton transfer (ESIPT) processes have been investigated by means of absorption, emission and nanosecond spectroscopy at room temperature and at 77 K in non polar solvents. The ESIPT is evidenced by a large Stokes shifted emission (11 000 cm⁻¹) only at 77 K. From fluorescence and excitation spectra it is suggested that at least three different species are present in the excited state at room temperature. Our theoretical calculation at AM1 level confirm the cis-isomer to be the only viable form in the ground state.     

Photodegradation of poly(neopentyl isophthalate) part I: Laboratory and outdoor conditions

In this paper the mechanisms of photodegradation of poly(neopentyl isophthalate) (PNI) in laboratory (Suntest XXL+, λ > 300 nm) and outdoor conditions are compared. Changes in the chemical composition were studied with ATR-FTIR, SEC and MALDI-ToF MS. Furthermore, the results were compared with data presented in our previous paper on PNI coatings that were aged in the UVACUBE (λ > 254 nm). Two main aspects of photodegradation of PNI are addressed in the present paper: the influence of different wavelengths and the comparison of laboratory and outdoor exposure regarding the mechanism of degradation. Under short (λ > 254 nm) and long (λ > 300 nm) wavelength irradiation similar products of degradation are formed. However, the presence of short wavelength radiation dramatically accelerates the overall rate of photodegradation of PNI. UV light absorption calculations confirm this experimentally found acceleration. Exposure of PNI in laboratory and outdoor conditions, both with wavelengths λ > 300 nm resulted in similar degradation products in the initial stage of ageing.     

Electronic properties of liquid water by sequential molecular dynamics/density functional theory

Electronic properties of liquid water were analysed by a sequential molecular dynamics (MD)/density functional theory approach. MD simulations are based on a polarisable model for water. Emphasis was placed on the prediction of the water dipole moment, liquid state polarisability, ionisation potential (IP), and vertical electron affinity. The dipole moment of the water molecule in liquid water is not dependent on the number of molecules included in the quantum mechanical calculations. The polarisability of the water molecule in liquid water is 4% lower than its gas phase value. The IP of liquid water (9.7 ± 0.06 eV) is in good agreement with recent experimental data.     

Photophysical characterization of imidazolium-substituted Pd(II), In(III), and Zn(II) porphyrins as photosensitizers for photodynamic therapy

The photophysical properties of four imidazolium-substituted metalloporphyrins have been assessed to gain insights into the relative efficacy of the compounds for photodynamic therapy (PDT). A set of zinc(II), palladium(II), and chloro-indium(III) porphyrins all bear a net positive charge owing to the diethylimidazolium unit; one zinc chelate bears a negative charge owing to a bis(sulfobutyl)imidazolium unit. The photophysical properties of the cationic and anionic zinc porphyrins are very similar to one another in organic solvents, phosphate-buffered saline, and in the presence of bovine serum albumin. The properties of the zinc and palladium porphyrins bearing charged peripheral groups are generally similar to those of neutral analogs in organic solvents. The palladium porphyrin shows an essentially quantitative yield (≥0.99) of the triplet excited state compared to the zinc porphyrins (0.9), and all are quantitatively quenched (at the diffusion limit) by molecular oxygen in air-saturated fluid solution. If the rate constant and yield of quenching of the triplet excited state by energy or electron transfer to molecular oxygen is the same in the cellular environment as in solution, then these processes combined with the triplet yield contribute only a factor of 1.3 to the higher PDT activity of analogous palladium versus zinc porphyrins, which is much smaller than what is observed. Therefore, other factors such as transient reduction of the excited porphyrin or delivery to the target site must predominantly underlie the difference in PDT efficacy of these sensitizers.     

Isoconversional kinetics of degradation of polyvinylpyrrolidone used as a matrix for ammonium nitrate stabilization

Thermogravimetric analyzer (TGA) has been applied to measure the kinetics of the thermal degradation of virgin polyvinylpyrrolidone (PVP) and a phase stabilized PVP–ammonium nitrate (AN) material. The PVP–AN samples have been prepared by using 20 wt.% of AN and PVP of three different molecular weights. Virgin PVP undergoes a major mass loss in the region 380–550 °C leaving a small amount of nonvolatile residue. The application of an advanced isoconversional method to the respective degradation process demonstrates that its effective activation energy increases from 70 kJ mol⁻¹ to a plateau value at 250–300 kJ mol⁻¹, which is independent of the molecular weight. The PVP–AN materials lose spontaneously 20% of their mass on heating above the glass transition temperature of the PVP matrix (160–180 °C). After the escape of AN, the remaining PVP matrix degrades in the same temperature region as virgin PVP, however, the effective activation energy of this degradation is 150–200 kJ mol⁻¹.     

Ultrafast dynamics of heat flow across molecules

An ultrafast flash thermal conductance apparatus is used to study heat flow through aliphatic and aromatic molecules arranged in self-assembled monolayers (SAMs). The apparatus consists of a thin metal film which can be flash-heated by many hundreds of degrees in 1 ps using a femtosecond pulse. Heat flow from the metal surface into the SAM molecules is detected using vibrational sum-frequency generation (SFG) spectroscopy. The SAMs studied were alkanethiolates (AT) ranging from C6 to C24, benzenethiolate (BT) and benzylmercaptide (BMT). SFG in the CH-stretch region selectively probes transitions of the terminal methyl groups of AT and the CH moiety at the 4-position of the phenyl ring of BT and BMT (opposite the thiolate-surface bond). The SFG signal is sensitive to temperature-jump induced thermal disorder of the SAM and also to vibrational frequency shifts induced by the changing intramolecular vibrational populations. The SFG probe functions as a thermometer, and this thermometer is 1.5 Å thick with a response time of 1 ps. In the AT chains, a study of the length dependence is used to determine the rate heat flows across the metal–SAM interface and the rate of heat flow through the AT chains. The interface thermal conductance is 220 GW m⁻² s⁻¹. The AT molecular conductance is 50 pW K⁻¹ or 0.3 eV s⁻¹ K⁻¹. Heat flow through the AT chains is ballistic with a velocity of 1 km/s. Heat flow into BMT is slower than in BT because BMT has one additional methylene linker group. The BT and BMT structures evidence a thermally-initiated surface rearrangement occurring in a few tens of picoseconds. These SAMs are strained and the phenyl rings cannot adopt the most stable staggered herringbone structure. After the T-jump, the SAM molecules have enough freedom to relax into more favorable configurations.     

Preparation and characterization of mesoporous N-doped and sulfuric acid treated anatase TiO2 catalysts and their photocatalytic activity under UV and Vis illumination

Nitrogen-doped TiO₂ catalysts were prepared by a precipitation method. The samples were calcined at 400 °C for 4 h in air. X-ray diffraction (XRD), X-ray photoelectron spectroscopy (XPS), low temperature N₂-adsorption was used for structural characterization and UV-diffuse reflectance (UV-DR) was applied to investigate the optical properties of the as-prepared samples. It was found that microporous N-doped catalysts have solely anatase crystalline structure. Acidic treatment of the calcined samples was performed using sulfuric acid agitation. The crystalline structure remained unchanged due to surface treatment, while the porosity and the surface areas were decreased dramatically. Optical characterization of the doped catalysts showed that they could be excited by visible light photons in the 400–500 nm wavelength range (λ_g,1=390 nm, λ_g,2=510 nm). It was also established that surface treatment enhances the Vis-light absorption of the N-TiO₂ powders. Finally the catalysts were tested in the photocatalytic degradation of phenol in aqueous suspensions. Two different light sources were used; one of them was a UV-rich high pressure Hg-lamp, while the other was a tubular visible light source. We found that using visible light illumination N-doped, acid treated TiO₂ samples were more catalytically active than non-doped TiO₂ catalysts.     

Molecular fine structure and transition dipole moment of NO2 using an external cavity quantum cascade laser

Rotational vibrational fine structure and transition dipole moment of NO₂ is measured using Doppler free saturation spectroscopy with an external grating cavity quantum cascade laser (QCL). The QCL wavelength is calibrated using a 310 cm long internally coupled Fabry–Perot interferometer. We obtain a frequency splitting of 139.68 ± 0.06 MHz (0.0047 cm⁻¹) between the spin doublets (17) of 000 → 001 transition of NO₂. The resolution of the QCL based saturation spectrometer is limited by the QCL linewidth of 3.99 MHz ( 0.00013 cm⁻¹) deduced from the half width of the Lamb dips. The Lamb dip spectroscopy is utilized to obtain a vibrational dipole moment of 0.37 Debye for the (17) transitions.     

Carbon-assisted morphological manipulation of CdS nanostructures and their cathodoluminescence properties

CdS nanostructures with different morphologies and sizes were successfully fabricated through a facile and effective carbon-assisted thermal evaporation method. Through simply changing the positions of silicon substrates, the temperatures and the effects of carbon in different zones were modified, and thus the morphologies of CdS nanostructures were varied from multipods to nanobrushes to nanocups. These nanostructures were characterized by scanning electron microscopy (SEM), transmission electron microscopy (TEM), energy-dispersive X-ray spectrometry (EDS), X-ray powder diffraction (XRD) and Raman spectroscopy. Cathodoluminescence (CL) measurement shows that the as-grown CdS nanostructures display different luminescent properties. CdS multipods and nanocups show mainly green emission centered at 496 nm. However, nanobrushes exhibit predominant red emission band peaking at 711 nm. These interesting results show that carbon not only affected the growth process but also influenced the properties of CdS nanostructures.     

Negatively charged micelles directed synthesis of snow-ball flower like superparamagnetic Ni nanoparticles and investigation of their properties

Snow-ball flower like Ni nanoparticles have been synthesized using negatively charged micelles. Negatively charged micelles incorporate the Ni⁺² onto its head group by electrostatic attraction and again a surfactant layer is arranged on positively charged Ni and thus in a repetitive way layer-by-layer a snow-ball flower like structure is formed. After reduction of Ni⁺² to Ni atom by sodium borohydride and hydrated hydrazine the Ni clusters (3 nm) are formed and confined in micelles in snow-ball flower like pattern. The sizes of these nanoflowers are of 30 nm order. The particles are superparamagnetic in nature with blocking temperature about 117 K.     

Nanorods and nanolipsticks structured ZnO photoelectrode for dye-sensitized solar cells

Nanostructured ZnO photoelectrodes were synthesized on SnO₂:F (FTO) glass substrate coated with sol–gel based ZnO seed layer via hydrothermal route at various deposition times: 30, 60, 90 and 180 min. Ruthenium based dye and carbon counter electrode were used for the fabrication of dye-sensitized solar cells (DSCs). Interestingly, nanolipsticks structures were found with low deposition times, where two dissimilar nanorods (111 and 165 nm) attached together. The number of nanolipsticks structures decreased and nanorods increased with increase of deposition time. The DSCs based on ZnO nanorods for 180 min, shows the maximum efficiency, 1.04% at 100 mW/cm² light intensity.     

Electrochemical properties of polyaniline in p-toluene sulfonic acid solution

Polyaniline was deposited potentiodynamically on a stainless steel substrate in the presence of an inorganic acids (sulfuric acid). The electrochemical characterization of the electrode was carried out by means of cyclic voltammetry and electrochemical impedance spectroscopy in the organic acids (p-toluene sulfonic acid) solution. The results show that polyaniline has a high specific capacitance of 431.8 F g⁻¹ at 1 mV s⁻¹, high coulombic efficiency of 95.6% at 20 mV s⁻¹, and exhibits a high reversibility. This indicates the promising feasibility of the polyaniline used as an electrochemical capacitor material in the electrolyte of p-toluene sulfonic acid solution especially at high charge–discharge process.     

Effects of adsorption-induced microstructural changes on separation of xylene isomers through MFI-type zeolite membranes

Various factors were found to affect the performance of MFI-type zeolite membranes in separating xylene isomers (p-xylene, PX; o-xylene, OX) by pervaporation. In this work the effect of membrane microstructure, membrane quality, and pervaporation operating conditions were investigated using three membrane microstructures: random, c-oriented, and h,0,h-oriented. Operation under pervaporation conditions means that high loadings of PX will be present in the framework; therefore, the role of PX–framework and PX–OX interactions needs to be taken into consideration. Single component experiments demonstrated that the order of experimentation with OX and PX will affect the ideal selectivity. Multi-component studies showed that membrane performance is highly dependent on the relative concentration of the isomers in the feed; the higher the PX concentration the lower the selectivity observed. However, although high selectivity (18) was observed at low PX concentrations in the feed, it was not stable over time. Similar trends were observed for all membrane microstructures but differences in the selectivity values occurred. The structural deformation caused by high loadings of PX into the silicalite crystal affects each microstructure differently, ultimately leading to differences in performance.     

An efficient biosurfactant-producing bacterium Pseudomonas aeruginosa MR01, isolated from oil excavation areas in south of Iran

A bacterial strain was isolated and cultured from the oil excavation areas in tropical zone in southern Iran. It was affiliated with Pseudomonas. The biochemical characteristics and partial sequenced 16S rRNA gene of isolate, MR01, was identical to those of cultured representatives of the species Pseudomonas aeruginosa. This bacterium was able to produce a type of biosurfactant with excessive foam-forming properties. Compositional analysis revealed that the extracted biosurfactant was composed of high percentages lipid (65%, w/w) and carbohydrate (30%, w/w) in addition to a minor fraction of protein (4%, w/w). The best production of 2.1 g/l was obtained when the cells were grown on minimal salt medium containing 1.2% (w/v) glucose and 0.1% (w/v) ammonium sulfate supplemented with 0.1% (w/v) isoleucine at 37 °C and 180 rpm after 2 days. The optimum biosurfactant production pH value was found to be 8.0. The MR01 could reduce surface tension to 28 mN/m and emulsified hexadecane up to E24  70. The results obtained from time course study indicated that the surface tension reduction and emulsification potential was increased in the same way to cell growth. However, maximum biosurfactant production occurred and established in the stationary growth phase (after 84 h). Fourier Transform Infrared spectrum of extracted biosurfactant indicates the presence of carboxyl, amine, hydroxyl and methoxyl functional groups. Thermogram of biosurfactant demonstrated three sharp endothermic peaks placing between 200 and 280 °C. The core holder flooding experiments demonstrated that the oil recovery efficiencies varied from 23.7% to 27.1% of residual oil.     

Dual electrochemical microsensor for simultaneous measurements of nitric oxide and oxygen: Fabrication and characterization

A planar-type amperometric dual microsensor was developed for the simultaneous measurement of the nitric oxide (NO) and oxygen (O₂) concentrations. The sensor (overall diameter = 500 μm) consisted of a dual working electrode (WE) containing two platinized platinum microdisks (25 μm diameter, WE1, WE2, distance between two disks > 330 μm) and a Ag/AgCl wire reference electrode covered with an expanded poly(tetrafluoroethylene) gas-permeable membrane. The differentiation and concurrent measurements of NO and O₂ were obtained successfully using two sensing WEs with different applied potentials (+0.75 V for WE1 and −0.4 V for WE2). Cross-talk between WE1 and WE2 was eliminated with an optimized internal solution composition. Linear dynamic range, selectivity, sensitivity, detection limit (<5 nM for NO; <500 nM for O₂), and stability (>50 h) were evaluated.     

Effect of small amount of poly(ethylene naphthalate) on isothermal crystallization and spherulitic morphology of poly(trimethylene terephthalate)

The effect of a small amount of poly(ethylene naphthalate) (PEN) in its blends with poly(trimethylene terephthalate) (PTT) on isothermal melt-crystallization kinetics and spherulitic morphology of the blends was thoroughly investigated. The maximum PEN content in the blends was 9 wt%. Due to the single composition-dependent glass transition temperature (T_g) that was observed for each blend, these blends appeared to be miscible in the amorphous state. After isothermal crystallization from the melt state, the neat PTT and its blends with PEN exhibited either double or triple melting endotherms. The triple endothermic peaks were observed in both the neat PTT and the blends when being crystallized at crystallization temperatures (T_c) of less than or equal to 195 °C. The equilibrium melting temperature () for the neat PTT was determined based on the linear Hoffman–Weeks extrapolative method to be 248 °C. Such values for the blends were found to decrease with the addition and increasing amount of PEN. Both the neat PTT and the blends were isothermally crystallized over the T_c range of 190–205 °C. At a given T_c, the 97PTT/3PEN blend exhibited a half-time of crystallization (t_0.5) value that was lower, while it exhibited reciprocal half-time (), Avrami rate constant (K_A), and spherulitic growth rate (G) values that were greater, than those of the neat PTT. With further increase in the PEN content, the t_0.5 value increased, while the , K_A, and G values decreased. Analysis of the G values based on the Lauritzen–Hoffman's (LH) secondary nucleation theory showed that the neat PTT and the 91PTT/9PEN blend exhibited a regime II→III transition at 194 °C (467.2 K), while no regime transition was observed for the other two blends. The lateral and the fold surface free energies (σ and σ_e) and the work of chain folding (q) for the neat PTT and the blends were 19.4, 30.2–46.3 erg cm⁻², and 2.4–3.6 kcal mol⁻¹, respectively. Lastly, the effect of both the T_c and the PEN content on morphology and texture of the PTT spherulites was also investigated and the results showed that the texture of the spherulites became coarser with increasing T_c and PEN content.     

Existence of clathrate-like structures in supercooled water: X-ray diffraction evidence

X-ray diffraction study of supercooled water has been performed using an imaging-plate X-ray detector down to −15 °C. The peak at 10.8 Å, which grows with decreasing temperature, in the radial distribution function {D(r) − 4πr²ρ₀} indicates the existence of clathrate-like structures in supercooled water. It is suggested that anomalous properties of water, which become more pronounced at low temperatures, are closely linked to the development of clathrate-like structures in water at low temperatures.     

Enhanced tungstate electrochromism via formation of transparent conductive networks

Indium tin oxide (ITO) nanopowder was added to a polymer film containing WO₃ · H₂O particles to enhance electron conductivity and complimentary Li ion kinetics in an electrochromic device. Film conductivity increased dramatically with ITO content, suggesting the formation of conductive ITO networks in the film. The improved electron conductivity leads to a substantial increase of the effective Li⁺ ion diffusion coefficient in the composite film, from 10⁻¹¹ to 10⁻⁹ cm²/s. Electrochromic contrast studies revealed that the presence of the ITO networks leads to enhanced blue/green color contrast.     

Efficient hydrogen peroxide generation from organic matter in a bioelectrochemical system

Hydrogen peroxide (H₂O₂) is an important industrial chemical, but its current production methods are highly energy-intensive. This study presents a novel process for the production of H₂O₂ based on the bioelectrochemical oxidation of wastewater organics at an anode coupled to the cathodic reduction of oxygen to H₂O₂. At an applied voltage of 0.5 V, this system was capable of producing 1.9 ± 0.2 kg H₂O₂/m³/day from acetate at an overall efficiency of 83.1 ± 4.8%. As most of the required energy was derived from the acetate, the system had a low energy requirement of 0.93 kWh/kg H₂O₂.