The manifestation of non-bonded attraction in the physical properties of cis and trans olefins

Non-bonded attraction is suggested to account for a host of differences in the physical properties of cis and trans olefins of the type XHC=CHX. The main predictions are: (i) The cis isomer is more stable than the trans isomer; (ii) The C=C bond is longer and the C-X bonds are shorter for the cis isomer; (iii) The π MO's orbital energies of the two isomers differ such that the trans isomer is a better electron donor and electron acceptor than the cis isomer. Ab initio calculations at the STO-3G and the 4-31G levels in support of the model are presented. The photoelectron spectra of cis and trans difluoro, dichloro and dibromoethylene are discussed, and found to be in accord with our qualitative model.     

Isomeric complexes of ruthenium(II) with neutral heterocyclic schiff base ligands. High resolution proton resonance spectra of trans-cis isomeric pairs of RuX2L2 (L = 2-arylpyridinecarboxaldimine, X = Cl, Br) and comparison of their physical properties

The reaction of 2-arylpyridinecarboxaldimine [RH₄C₆NC(H)Py, L (1)] with hydrated RuX₃ (X = Cl, Br) in boiling C₂H₅OH affords dark crystals of RuX₂L₂. Two geometrical isomers of the compound have been isolated and characterized by analytical and spectroscopic data. The trans isomer of RuCl₂L₂ shows a single sharp band for ν(Ru---Cl), whereas two bands are observed for the corresponding cis isomer. The highresolution ¹H NMR spectra of the isolated complexes are reported and completely assigned. All the complexes have multiple t₂→π^*(L) transitions in the visible region. Each of the complexes display a quasi-reversible oxidative response due to an Ru^III/Ru^II couple in the range 0.25–0.40 V vs S.C.E. at a platinum working electrode. The formal potentials of this couple obey the Hammett relationship. The ligand-based irreversible oxidations are also briefly noted.     

Synthesis of 1,1′-methylenedi[(1R,1′R,3R,3′R,5R,5′R)-8-oxabicyclo[3.2.1]oct-6-en-3-ol] and derivatives: precursors of long-chain polyketides

Racemic 1,1′-methylene[(1RS,1′RS,3RS,3′RS,5RS,5′RS)-8-oxabicyclo[3.2.1]oct-6-en-3-ol] ((±)-6) derived from 2,2′-methylenedifuran has been resolved kinetically with Candida cyclindracea lipase-catalysed transesterification giving 1,1′-methylenedi[(1R,1′R,3R,3′R,5R,5′R)-8-oxabicyclo[3.2.1]oct-6-en-3-ol] (−)-6 (30% yield, 98% ee) and 1,1′-methylenedi[(1S,1′S,3S,3′S,5S,5′S)-8-oxabicyclo[3.2.1]oct-6-en-3-yl] diacetate (+)-8, (40% yield, 98% ee). These compounds have been converted into 1,1′-methylenedi[(4S,4′S,6S,6′S)- and (4R,4′R,6R,6′R)-cyclohept-1-en-4,6-diyl] derivatives.     

3-exo,3′-exo-(1R,1′R)-Bithiocamphor — a versatile source for functionally different 3,3′-bibornane derivatives, II. 1 An access to 3-exo,3′-exo-(1r,1′r)-bicamphor and related compounds

3-exo,3′-exo-(1R,1′R)-bicamphor (12) is obtained from 3-exo,3′-exo-(1R,1′R)-bithtiocamphor (3) by condensation with hydrazine hydrate followed by hydrolysis of the resulting dihydropyridazine 11. Deprotonation of 12 with NaH and subsequent treatment with potassium hexacyanoferrate (III) furnishes the 2,2′-dioxo-3,3′-bibornanylidene 13, whilst reduction of 12 with L1AlH₄ affords the 3,3′-biisoborneol 16. Further related transformations to various 2,2′-difunctional 3,3′-bibornane derivatives are described, which are could be of interest as chiral ligands     

New chiral P-ligands: P-amino- and P-cycloalkoxy dibenzo[c.e][1,2]oxaphosphorines

The reaction of racemic chloro-dibenzo[c.e][1,2]oxaphosphorine with (S)-(−)--methyl-benzylamine and (1R,2S,5R)-(−)-menthol led to a mixture of optically active diastereomers of the corresponding phosphonous derivatives. The isomers were separated in a diastereomeric excess of 71–93% at the phosphonic oxide and/or at the phosphonous borane stage. The P(III) boranes are suitable precursors of the P-ligands. The absolute P-configuration in one of the menthyl phosphonates isolated was determined by single crystal X-ray analysis.     

Citrus bitter principles—X Extractives of Swinglea glutinosa (bl.) merr.

A severine alkaloid(3), a C₃₀ triterpene(8) and a related acetate (9) have been isolated from extracts of the fruit of Swinglea glutinosa (Bl.) Merr. (Rutaceae). Spectroscopic studies, including NMR spin decoupling, as well as hydrolytic experiments indicate that the alkaloid should be formulated as 3. The synthesis of alloseverine(7) is described and indicates that severine alkaloids have neryl stereochemistry. The triterpene(8) is of the protolimonoid type and is a mixture of C-21 isomers related to melianone(8). Oxidation of the triterpene gave melianone lactone (3-oxo-3β-deacetylturraeanthin lactone)(10).     

Asymmetric hydroboration of [E]- and [Z]-2-methoxy-2-butenes. Synthesis of (−)-[2R,3R]-butane-2,3-diol in >97% ee

Asymmetric hydroboration of [E]- and [Z]-2-methoxy-2-butene, using (−)-diisopinocampheylborane at −25°C in THF solvent, followed by oxidation using H₂O₂/NaOH, gave (−)-[2R,3R]- and (+)-[2R,3S]-3-methoxy-2-butanols in >97 and 90% ee, respectively. (−)-[2R,3R]-3-Methoxy-2-butanol was converted to (−)-[2R,3R]-butane-2,3-diol (>97% ee, in an overall yield of 65%).     

Conformational and NBO analysis on cis and trans isomers of methyl-1-(4-hydroxy-3-methoxyphenyl)-1,2,3,4-tetrahydro-9H-β-carboline-3-carboxylate

The cis and trans-methyl-1-(4-hydroxy-3-methoxyphenyl)-1,2,3,4-tetrahydro-9H-β-carboline-3-carboxylates were prepared and ¹H and ¹³C NMR spectra were recorded for both isomers. Conformational and NBO analysis were carried out for the cis and trans isomers. Conformer structures were pre-optimized using the hybrid method B3LYP along with the 6-311+G(d) basis set. Frequency calculations were employed to confirm the structures as minimum points. Potential energy surfaces (PES) were built at the same level of theory. Geometries obtained from DFT calculations were used to perform NBO analysis by the NBO 3.1 module in GAUSSIAN 03. The results obtained through theoretical calculations revealed that the shielding observed at C1 for the trans isomer can be attributed to carbomethoxy γ-effect, together with the hyperconjugative effect, while only hyperconjugative effects were found to explain the shielding of C3. The higher chemical shift value of C3 of the cis isomer was attributed to the carbonyl substituent, which plays an important role by capturing part of the electronic density in C3.     

Macropolyhedral boron-containing cluster chemistry. Aspects of the S2B16H16 system. Preparation, structure, NMR spectroscopy and isomerism

Thermolysis of [arachno-4-SB₈H₁₂] (1) in boiling cyclohexane gives two isomers 2 and 3 of 18-vertex [S₂B₁₆H₁₆], together with known 12-vertex [closo-1-SB₁₁H₁₁] (4) and known 11-vertex [nido-7-SB₁₀H₁₂] (5). Compounds 2 and 3 are characterised by single-crystal X-ray diffraction analyses and single- and double-resonance ¹¹B- and ¹H-NMR spectroscopy. The [n-S₂B₁₆H₁₆] isomer 2 takes the form of nido ten-vertex: nido ten-vertex [anti-B₁₈H₂₂] with the 9 and 9′ positions occupied by S vertices, whereas the [iso-S₂B₁₆H₁₆] isomer 3 takes the form of a nido 11-vertex {SB₁₀} subcluster fused via a common two-boron edge to a nido-type {B₈} subcluster that is additionally linked exo to the {SB₁₀} subcluster by a bridging S atom that is held endo to the {B₈} unit. Isomer 2 is readily deprotonated and its monoanion 6 is characterised by NMR spectroscopy and by a single-crystal X-ray diffraction analysis of its [tmndH]⁺[n-S₂B₁₆H₁₅] salt 6b; deprotonation has occurred from an open-face B---H---B bridging site.     

Asymmetric Synthesis via Acetal Templates. 14. Preparation of Enantiomerically Pure (3S,4S)- and (3S,4R)-Statine Derivatives

Several (3S,4S)- and (3S,4R)-statine derivatives have been prepared by attack of nucleophiles on crystalline, epimeric N-BOC-lactams 7a and 7b. The key step in the synthesis of the lactams was the TiCl₄-catalyzed coupling reactions of acetals derived from (R)-1,3-butanediol with allyltrimethylsilane.

Several enantiometrically pure (3S,4S- and (3S, 4R)-statine derivatives were made by sodium cyanide-catalyzed reaction of nucleophiles with the lactams 3a and 3b which were synthesized by the scheme 1 → 2 → 3.     

Coordination geometry of chromium(VI) species. The first example of cis-bridging chromate ions in helically structured catena(μ-CrO4-O,O′)[Ni(HIm)3H2O]

Nickel(II) chromate complex with imidazole (HIm) was isolated from the [Ni²⁺–HIm–CrO₄²⁻] system in various experimental conditions, i.e. reagent molar ratios and nickel(II) salts. The catena(μ-CrO₄-O,O′)[Ni(HIm)₃H₂O] (1) crystallizes in monoclinic crystal system—space group P2₁/n with cell parameters: a=11.784(2), b=8.899(2), c=13.934(3) (Å), β=95.19(3) (°). The unit cell contains two independent helixes, left- and right-handed, stabilized by intrahelical and interhelical hydrogen bonds (HB) and π–π interactions. The cis coordination of the CrO₄²⁻ anions and the HB systems appeared to be the main determinants of the helical architecture. To the best of our knowledge the cis-chromate coordination was observed for the first time. The cis coordination causes the distortion of the nickel octahedron, which was analysed by 4 K single crystal electronic spectra with D_4h symmetry approximation (gaussian resolution and crystal field parameters). This symmetry was also confirmed with the polarised electronic spectra. The magnetic properties of the complex suggest the occurrence of weak intrachain antiferromagnetic interactions between the magnetic Ni^II center. The computational DFT studies of complex 1 assuming three possible isomers mer[(HIm)₃]–cis[(CrO₄²⁻)₂], mer–trans and fac–cis suggested that the main contribution to the stability of 1 might have interhelical and intrahelical hydrogen bonds.     

Studies on the synthesis of biphenylneolignans. Part 1: Enantioselective synthesis of (S,S)- and (R,R)-2,2′-dimethoxy-4-(3-hydroxy-1-propenyl)-4′-(1,2,3-trihydroxypropyl)diphenyl ether

Two erythro-isomers of 2,2′-dimethoxy-4-(3-hydroxy-1-propenyl)-4′-(1,2,3-trihydroxypropyl)diphenyl ether, (7′S, 8′S)-9 and (7′R, 8′R)-9, were synthesized in seven steps, in which an improved method for the synthesis of the key intermediate 3 was developed. The absolute configuration of the target molecules was also confirmed.     

(R)-Binaphthoxy diiodide lanthanides

The synthesis and characterization of novel enantiopure binaphthoxy-diiodo lanthanides [(R)-2-(1-naphthol)-1′-naphthoxide)LnI₂(THF)₃] (Ln=Sm (4a), Yb (4b), La (4c)) are described. These complexes have been prepared by reacting the mono potassium salt of (R)-binaphthol with the corresponding lanthanide triiodides and were characterized by elemental analysis, IR and NMR spectroscopies. Recrystallization of 4c from THF–hexane led to monocrystals of [(R)-2-(1-naphthol)-1′-naphthoxide)]-diiodolanthane-tetrakistetrahydrofurane] (4c*). Complex 4c* crystallizes in the orthorhombic space group, P2₁2₁2₁ with cell parameters a=13.086(1) Å, b=15.496(1) Å, c=18.854(1) Å, V=3823.2(6) ų, and Z=4.     

First detection of the Cs symmetric isomer of carbon hexaoxide (CO6) at 10 K

Carbon oxides of the form CO_n (n = 2–8) have long been known as important molecules in atmospheric and solid state chemical reactions. Here, we report on the first infrared spectroscopic detection of the cyclic (C_s) isomer of carbon hexaoxide (¹²C¹⁶O₆) via its ν₁ vibrational mode centered around 1876 cm⁻¹ under matrix isolation conditions; the identification of the ¹²C¹⁸O₆, ¹³C¹⁶O₆, and ¹³C¹⁸O₆, isotopologues supported by ab initio calculations confirm the assignments. We also discuss possible formation routes of this molecule.     

Stereoselective synthesis of (1R,2S)-2-amino-1,3-diols from (R)-cyanohydrins

Vinyl substituted (1R,2S)-amino alcohols 5 were obtained by addition of vinyl magnesium bromide to the corresponding cyanohydrin O-trimethylsilyl ethers (R)-2. The O- and N-protected vinyl amino alcohols 6 were ozonized at −78°C in methanol yielding (1R,2S)-2-amino-1,3-diols7 in high enantiomeric and diastereomeric excesses. For purification, compounds 7 in some cases were acetylated to give the derivatives (1R,2S)-8. Racemic 6a was converted by oxidative ozonolysis at −78°C in methanolic NaOH solution to the corresponding methyl N-acetyl-β-hydroxy propanoate 9a. The configuration of (1R,2S)-8a was confirmed by x-ray crystallographic analysis.     

Liquid chromatographic–electrospray mass spectrometric study of the phthalides of Angelica sinensis and chemical changes of Z-ligustilide

High-performance liquid chromatography–electrospray ionization–mass spectrometry has been applied to analyze the chemical constituents of Danggui (the rhizome of Angelica sinensis) and to study chemical changes of Z-ligustilide. Twelve phthalides were unambiguously identified as senkyunolide I (3), senkyunolide H (4), sedanenolide (8), butylphthalide (9), E-ligustilide (13), Z-ligustilide (14), Z-butylidenephthalide (15), Z,Z′-6.8′,7.3′-diligustilide (16), angelicide (17), levistolide A (18), Z-ligustilide dimer E-232 (19) and Z,Z′-3.3′,8.8′-diligustilide (20) in Danggui extract. The existence of 12 other phthalides (2, 5–7, 11, 12, 22–27), ferulic acid (1) and coniferyl ferulate (10) in Danggui extract has also been demonstrated. Phthalides 3, 4, 16–18 and 20 were determined to be the products from chemical change of Z-ligustilide. This is the first report of the existence of 16 compounds (2–8, 10–12, 20, 22–25 and 27) in Danggui extract.     

Novel cytotoxic 1H-cyclopenta[b]benzofuran lignans from Aglaia elliptica

Bioassay-guided fractionation of the stems and fruits of Aglaia elliptica using human oral epidermoid carcinoma (KB) cells, led to the isolation of five cyclopenta[b]benzofurans, constituted by methyl rocaglate (1) and four novel compounds (2–5), along with three known dammarane triterpenoids. Compound 5 possesses an unusual formyl ester substituent at the C-1 position. The structures of the novel compounds were established on the basis of spectroscopic methods. Compounds 1–5 were found to be very potent cytotoxic substances when evaluated against a panel of human cancer cell lines.     

Correlation of the absolute conformation of sec alcohols derived from macrocyclic lactones of resorcylic acid and their stereoselective transacetylation in organic solvents by Pseudomonas fluorescens lipase

Transacetylation of diastereomeric pairs of sec. alcohols, derived from macrocyclic lactones of resorcylic acid; 7,β-trans-zearalenols (1,2, full names., (3S,7R and 3S,7S) trans- 3,4,5,6,9,10-octahydro-7,14,16-trihydroxy-3-methyl-1H-2-benzoxacyclotetradecine-1-ones), 7,β-cis-zearalenols (5,6),and 7,β-zearanols (9,10,full names., (3S,7R and 3S,7S) 3,4,5,6,9,10,11,12-decahydro-714,16-trihydroxy-3-methyl-1H-2-benzoxacyclotetradecine-1-ones) by vinylacetate, catalysed by Pseudomonas sp. and Pseudomonas fluorescens lipase in n-heptane and acetonitrile has been studied. It is highly stereoselective; diastereomeric excess of 7β-O-acetates was usually near 100%. K_M, V_max and specificity constant V_max/K_M do not significantly differ for 7β-stereoisomers 2, 6 and 10. However, they notably change on going from n-heptane to acetonitrile, and the specificity constant drops by factor ca 10-100. The enzyme-bound water is assumed to be partly released in the latter solvent, thus diminishing the interaction with the hydrophilic region of the substrates, and affecting the activity. but not the stereoselectivity of lipases. To correlate the structural and conformational properties of these substrates with unexpectedly high diastereoselectivity of enzymatic transacetylation, the solid state structures of 7β-isomers 2, 4, 6, 10 and 12 have been determined by X-ray analysis. The X-ray structure analysis has revealed that the 7 and 7β isomers possess notably different and in some cases almost mirror-image related absolute conformations around the reactive center. The importance of conformational chirality in the hydrophobic region of these substrates for stereoselection in transacylation by microbial lipases is discussed.     

Inokosterone, an insect metamorphosing substance from Achyranthes fauriei : Absolute configuration and synthesis

Inokosterone, a phytoecdysone isolated from Achyranthes fauriei (Amaranthaceae), has been partially acetylated to give the 2,26-diacetate (4) which has been converted into methyl 5 - acetoxy - 4 - methylpentanoate (7), showing no apparent []_D, and 2β - acetoxy - 3β,14 - dihydroxy - 5β - pregn - 7 - ene - 6,20 - dione (8). Chemical and physiochemical studies have shown the configurations at C-20 and C-22 to be R. Inokosterone has thus been concluded to be a mixture of C-25 epimers of (20R,22R) - 2β,3β,14,20,22,26 - hexahydroxy - 5β - cholest - 7 - en - 6 - one (1). After the synthesis of the model compound, a C-25 epimeric mixture of (20R,22R) - 3β,20,22,26 - tetrahydroxy - 5 - cholestane (23), inokosterone has been synthesized via (20R) - 2β,3β,14,20 - tetrahydroxy - 20 - formyl - 5β - pregn - 7 - en - 6 - one (25) by Grignard reaction with 4 - (tetrahydrofuran - 2 - yloxy) - 3 - methylbutynylmagnesium bromide (15) followed by hydrogenation and hydrolysis. The use of an NMR shift reagent with the inokosterone acetates (9, 29) and the optical activity measurement of - methylglutaric acid (3) derived from inokosterone have established that inokosterone is a 1:2 mixture of the C-25 R and S epimers.     

Radioresistance studies in Methylobacterium spp.

Methylobacterium extorquen was isolated and was found as one of the most resistant microorganisms in the original bioburden of ophthalmic cotton dressings to be submitted to γ radiation sterilization. Radiation survival curves were simultaneously performed in phosphate buffer and in test-pieces on two isolates, one obtained before irradiation (wild strain) and the other after irradiation at 20 kGy (rad strain), as well as on three type strains of Methylobacterium spp. (M. extorquens^T, M. radiotolerans^T and M. fujisawaense^T). The radiation resistance was compared using D_values. To analyze the effect of non linearity on radioresistance other measures were applied, such as intercept point, fraction of surviving cells at a selected dose and area. The ranking of strains with these approaches showed to be different, pointing out the need of an integrated measure of radioresistance. Therefore, an index of relative survival (IRS) is proposed.