Radiation-induced synthesis of branched liquid alkanes

The irradiation of gaseous alkane mixtures under circulation conditions was used for the synthesis of liquid branched hydrocarbons. It was found that the synthesized liquid product was a mixture of alkanes with the average molecular weight higher than the molecular weight of the parent gas by a factor of 3–4. The resulting liquids were characterized by boiling range from 35 to 200°C in atmospheric distillation. The average degree of molecular branching in the synthesized liquids was evaluated on the basis of their knock resistance. The octane ratings of liquid mixtures were above 95 (motor octane number) or 103 (research octane number). The fractional composition and detonation properties of the synthesized liquids suggested the prevalence of C₅–C₁₁ isomers with highly branched structures in these liquids. Depending on irradiation conditions, 2,3-dimethylbutane, 2-methylpentane, or 3-methylpentane was predominant among hexanes. As a rule, 2,2,3-trimethylbutane and 2,3-dimethylpentane prevailed among heptanes.     

Microwave synthesis of CdSe and CdTe nanocrystals in nonabsorbing alkanes

Controlling nanomaterial growth via the "specific microwave effect" can be achieved by selective heating of the chalcogenide precursor. The high polarizability of the precursor allows instantaneous activation and subsequent nucleation leading to the synthesis of CdSe and CdTe in nonmicrowave absorbing alkane solvents. Regardless of the desired size, narrow dispersity nanocrystals can be isolated in less than 3 min with high quantum efficiencies and elliptical morphologies. The reaction does not require a high temperature injection step, and the alkane solvent can be easily removed. In addition, batch-to-batch variance in size is 4.2 +/- 0.14 nm for 10 repeat experimental runs. The use of a stopped-flow reactor allows near continuous automation of the process leading to potential industrial benefits.     

In-silico investigations of selective miRNA-gene targets and their validation studies in obstructive sleep apnea (OSA) patient cohorts

BackgroundObstructive sleep apnoea (OSA) is a prevalent form of sleep disordered breathing which results in sleep fragmentation and deprivation. Obesity and cardiovascular disorders are the major risk factors associated with OSA. Molecular analysis of the factors associated with OSA could demarcate the clinical analysis pattern in a population.ObjectiveThis study pertains to in-silico analyses of miRNA and their gene targets with validation for their potential role in OSA as putative biomarker candidates.MethodsmiRDB, TargetScan and miRanda databases were used to identify targets of miR-27 and let-7 that have documented role in OSA and co-related obesity and cardiovascular disorders. Quantitative PCR was used to analyze expression pattern of miR-27 and let-7 in obese and non-obese OSA patient cohorts with respective controls. In-silico analysis was done using PatchDoc to obtain atomic contact energy (ACE) scores that indicated the docked gene targets to the predicted miRNA structures. The docked structures were analysed using Maestro Suite 11 for the hydrogen and aromatic interactions.ResultsDownregulation of miR-27 and let-7 in OSA compared to controls was observed. In-silico data analysis was performed for gene targets (TGFBR1, TGFBR2, SMAD2, SMAD4, CRY2 and CNR1) of the selected miRNAs (miR-27 and let-7). Among all, CNR1 and CRY2 were found to be better targets for miR-27 and let-7 respectively as per ACE scores, ROC scores and expression fold change in OSA.ConclusionOur study gives insights to the expression profiling of miR-27 and let-7 and explore a set of potential target genes (CNR1 and CRY2) of these two miRNAs for a promising clinical relevance in OSA.     

In-silico therapeutic investigations of arjunic acid and arjungenin as an FXR agonist and validation in 3T3-L1 adipocytes

The present study was to illustrate the agonistic property of arjungenin and arjunic acid towards farnesoid X receptor protein (FXR).The pharmacokinetic properties like molecular interactions, absorption, distribution, metabolism, elimination and toxicity (ADMET) of the ligands were checked through in-silico studies. Protein-ligand docking was carried out using autodock software. Molecular docking analysis confirmed strong binding energy and interaction of arjungenin and arjunic acid with the target protein and the ADMET profiles identified for both compounds were promising.Further in vitro studies were performed in 3T3-L1 adipocyte to verify the agonistic property of arjungenin and arjunic acid. Oil red O staining was done to check differentiation induction. Adiponectin, leptin, triglycerides and total cholesterol levels were quantified. The mRNA expression of FXR, Cyp7a1, PPAR-γ and SREBP-1c were quantified using fluorescent real-time PCR. Cytotoxicity assay was confirmed that up to 150 μM concentration there is no significant cell death on treatment with arjunic acid and arjungenin. Treatment with arjungenin and arjunic acid confirms increased differentiation of the cells with significant (P < 0.05) increase in adiponectin (118.07% and 132.92%) and leptin (133.52% and 149.74%) protein levels compared to the negative control group. After treatment with arjungenin and arjunic acid in 3T3-L1 preadipocytes the mRNA expression of FXR, PPAR-γ and SREBP-1c were significantly (P < 0.01) increased and cyp7a1 was significantly (P < 0.01) decreased when compared with the negative control group. Overall, our results suggest that arjungenin and arjunic acid acts as an FXR agonist and may be useful for rational therapeutic strategies as a novel drug to treat cholesterol mediated metabolic syndrome and insulin resistance.     

Formation of carboxylic acids from small alkanes in zeolite H-ZSM-5

The activation of propane and isobutane in acidic zeolite H-ZSM-5 in the presence of both CO and H2O has been studied by in situ solid-state NMR and GC analysis. Evidence was provided for the conversion of propane to isobutyric acid at 373-473 K by cleavage of the C-C bond; methane and ethane are also produced. Isobutane is transformed into pivalic acid with simultaneous production of hydrogen. The low conversion (1-2%) at this temperature was rationalized by the existence of a small number of sites that are capable of generating carbenium ions which are trapped by CO at this temperature. A formate species was observed when CO and H2O were present on H-ZSM-5. This species disappeared in the presence of the alkane. At 573 K, the generation of large amounts of CO2 indicates a much higher conversion of the alkanes into carboxylic acids which, however, decompose under the reaction conditions.     

NMR investigations into heterogeneous structures of thermosensitive microgel particles

The internal properties of submicron poly(N‐isopropylmethacrylamide) latex particles were investigated as a function of the methylene bisacrylamide (MBA) concentration used as a crosslinker. Two experimental approaches were performed. First, quasi‐electric light scattering measurements provided the size variation of the particles as a function of temperature, from which the swelling capacity of the particles as a function of MBA were estimated. In addition, the broadening and lowering effects of the volume phase transition temperature were detected from the turbidity of the solutions versus the MBA concentration. Second, observations of the transverse relaxation of protons gave evidence for heterogeneous structures inside the particles; several structural parts were discriminated from one another from different proton mobilities detected through magnetic relaxation rates. Corresponding to the concentration gradients of the crosslinker, the internal particle structures were looser and looser from the core to the shell. The state of the gelation of the polymer particles was governed by the initial amount of the crosslinker introduced into the latex recipe. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 889–898, 2000     

Total synthesis and NMR investigations of cylindramide

Cylindramide (1) was built up from three components: a hydroxyornithine derivative 7, a tetrazolylsulfone 8, and a substituted pentalene subunit 9. Derivative 7 was prepared in a six-step reaction sequence involving the Wittig reaction and a Sharpless asymmetric dihydroxylation starting from N-Boc-3-aminopropanal (12). Tetrazolylsulfone 8 was accessible in four steps from dioxinone 22. The synthesis of the pentalene fragment 9 started from cycloocta-1,5-diene 26, that was converted into enantiopure bicyclo[3.3.0]octanedione 29. The latter was functionalized to give derivative 9. The total synthesis was accomplished by inducing C-C bond formation by Sonogashira coupling of derivatives 9 and 7 followed by olefination with tetrazolylsulfone 8 under Julia-Kocienski conditions, macrocyclization, and subsequent Lacey-Dieckmann condensation to form the tetramic acid unit. As indicated by extensive 1H and 13C NMR spectroscopic investigations (DQF-COSY, ROESY spectra), the stereochemistry of synthetic cylindramide (1) corresponds with that of the naturally occurring product. ROE data were used for molecular modeling of the lowest-energy structures for cylindramide.     

Controlled polymer synthesis in homogeneous and heterogeneous processes

Research in polymer synthesis can be oriented toward method or structure. This review is intended to document both approaches. Recent examples from our own work as well as future prospectives will be presented. A general concern is to work out the impact from organic and supramolecular chemistry. Examples of method oriented work are (i) a unique polycondensation via carbon sulfur‐bond formation providing hybrid structures of, e.g., polyphenylenesulfide and polyaniline; (ii) a triazoline additive establishing a novel self‐regulation process in controlled radical polymerization; (iii) a metallocene catalyzed polyolefin synthesis which is performed by using “smart”, reversibly cross‐linked polymer resins as support; and (iv) hydrogen‐bonded aggregates suggesting new emulsifiers for emulsion polymerization thus leading to functional nanoparticles. Examples of structure oriented work are (i) rod‐coil block copolymers (1D case) as a “covalently bound combination” of rigid and flexible segments whereby a key synthetic concern is the chemical modification and quantitative end‐functionalization of polyphenylene chains; (ii) discs (2D case) as molecularly defined graphite subunits which are obtained via a remarkably mild intramolecular cyclodehydrogenation; and (iii) dendrimers (3D case) as shape‐persistent nanoparticles whose high degree of structural precision results from a new cycloaddition‐deprotection protocol.     

Application of parahydrogen for mechanistic investigations of heterogeneous catalytic processes

Parahydrogen-induced polarization technique (PHIP), based on the pairwise addition of molecular hydrogen to a substrate, was successfully applied to obtain novel information on the mechanisms of heterogeneous catalytic hydrogenation, hydrodesulfurization, and oligomerization processes. In particular, the PHIP effects were observed upon hydrogenation with parahydrogen catalyzed by the immobilized neutral complexes of rhodium and iridium, which confirms the similarity in the mechanisms of homogeneous and heterogeneous hydrogenation for such systems. In the study of acetylene oligomerization, a significant NMR signal enhancement was revealed for a number of C₄ oligomers, with the enhancement levels by far exceeding that observed in hydrogenation of carbon-carbon triple bonds. The mechanistic features of heterogeneous hydrogenation of a number of six-membered cyclic hydrocarbons over supported metal catalysts were investigated, and their hydrogenation scheme based on the pairwise addition of molecular hydrogen was proposed. Furthermore, the PHIP technique revealed that heterogeneous hydrodesulfurization of thiophene mainly proceeds via hydrogenation followed by a C—S bond cleavage. A significant enhancement of sensitivity in combination with characteristic line shapes of NMR signals make the PHIP method a unique and highly informative tool for the investigation of heterogeneous catalytic processes.     

Transfer hydrogenation of ketones to alkanes using tributylamine under heterogeneous Pd/C catalysis

Ketones undergo transfer hydrogenation using tributylamine in dioxane in the presence of a catalytic amount of Pd/C to give the corresponding alkanes. Copyright © 2014 John Wiley & Sons, Ltd.     

Aptamer sandwich assays: label-free and fluorescence investigations of heterogeneous binding events

We studied aptamer binding events in a heterogeneous format using label-free and fluorescence measurements for the purpose of developing an aptamer-based sandwich assay on a standard microtiter plate platform. The approach allowed visualization of the underlying aptamer immobilization and target binding events rather than relying on only an endpoint determination for method optimization. This allowed for a better understanding of these multi-step assays and optimal conditions specific to aptamers. α-thrombin was chosen as a prototypical analyte as two well-studied aptamers (15 and 29-mer) binding distinct epitopes are available. The Corning Epic? system, which utilizes a resonance waveguide diffraction grating in a 384-well microtiter plate format, was employed to measure relative immobilization and binding levels for various modified aptamers. Parameters investigated included the effects of aptamer orientation, label orientation, spacer length, spacer type, immobilization concentration, and binding buffer. Most notably, the 15-mer aptamer was preferable for capture over the 29-mer aptamer and aptamers with increasing poly(dT) spacer length between the biotin modification and the aptamer yielded decreased immobilization levels. This decreased immobilization resulted in increased α-thrombin binding ability for 15-mer aptamers with the poly(dT) spacer. Fluorescence measurements of fluorescein-labeled 29-mer aptamers with varying spacers were used to visualize sandwich complex formation. Using both label-free and traditional fluorescence measurements, an in-depth understanding of the overall assay was obtained, thus the inclusion of label-free measurements is recommended for future method development.     

Chemical investigations in the synthesis of O-serinyl aminoribosides

Glycosylation involving d-ribose derivatives and various N-protected tert-butyl l-serinates can be achieved efficiently by careful choice of the activation method at the anomeric position and of the Lewis acid promoter. The conditions described allow the major formation of the β-anomer required for further elaboration to liposidomycin and caprazamycin analogues.     

A new synthesis of ampicillin and related investigations

Quaternization of (S)-α-bromophenylacetic acid amide (8) with hexamethylentetramine (hexamine) preceded with ca. 80% inversion of configuration. Accordingly, starting from the trimethylsilylester of N-(S)-(α-bromo-α-phenylacetyl)-6-aminopenicillanic acid (4) quaternization with hexamine and subsequent hydrolysis afforded N-(R)-α-phenylglycyl-6-aminopenicillanic acid (1, ampicillin). Some other model reactions have been investigated.     

Gas-phase oxidation of isomeric butenes and small alkanes by vanadium-oxide and -hydroxide cluster cations

Bare vanadium-oxide and -hydroxide cluster cations (V(m)O(n)H(o)+, m = 2-4, n = 1-10, o = 0, 1) were generated by electrospray ionization in order to examine their intrinsic reactivity toward isomeric butenes and small alkanes using mass spectrometric techniques. Two of the major reactions described here concern the activation of C-H bonds of the alkene/alkane substrates resulting in the transfer of two hydrogen atoms and/or attachment of the dehydrogenated hydrocarbon to the cluster cations; these processes are classified as oxidative dehydrogenation (ODH) and dehydrogenation, respectively. For the dehydrogenation of butene, it evolved as a general trend that high-valent clusters prefer ODH resulting in the addition of two hydrogen atoms to the cluster concomitant with elimination of neutral butadiene, whereas low-valent clusters tend to add the diene with parallel loss of molecular hydrogen. Deuterium labeling experiments suggest the operation of a different reaction mechanism for V2O2(+) and V4O10(+) compared to the other cluster cations investigated, and these two cluster cations also are the only ones of the vanadium-oxide ions examined here that are able to dehydrogenate small alkanes. The kinetic isotope effects observed experimentally imply an electron transfer mechanism for the ion-molecule reactions of the alkanes with V4O10(+).     

Biocatalytic and chemical investigations in the synthesis of sucrose analogues

Herein, we report about the synthesis of sucrose analogues, obtained by two different approaches: a chemical and an enzymatic. The one step synthesis of the sucrose analogues with the exo-fructosyltransferase (EC 2.4.1.162) from Bacillus subtilis NCIMB 11871, which transfers the fructosyl residue of the substrate sucrose to the monosaccharide acceptors galactose, mannose, xylose and fucose, has been developed. Effects in the fructosylation by variation of the positions of the hydroxyl-groups in glycopyranoside acceptors have been studied in respect to their acceptor properties. In contrast, the chemical equivalent nonenzymatic organic synthesis of galacto-sucrose and manno-sucrose has been achieved including six synthetic steps.     

The numbers of chiral and achiral alkanes and monosubstituted alkanes

Whereas the theory for the enumeration of the optical isomers of the lakyl radicals and the alkanes has long been understood, this is not the case for the corresponding archiral isomers. We present for the first time recurrence formulae for counting the number of archiral isomers of the alkyl radicals and the alkanes. For chiral and archiral alkanes and monosubstituted alkanes, numerical results up to C₁₄ are tabulated.After presenting the history of the problem and the necessary definitions, we proceed to derive functional equations on the various generating functions, which readily yield the more explicit recurrence formulae usefule for numerical calculations. In the process, we first re-derive Pólya's expression for planted steric trees using his classical enumeration theorem. This result is then extended to the enumeration of free steric trees using the now standard tree-counting method due to Otter and known as a dissimilarity characteristic equation.By definition, a steric tree is a quartic tree (all points having degree 1 or 4) in which the four neighbors of every carbon point are given a tetrahedral configuration. Building on the methods of the first two authors for counting chiral and archiral trees in the plane, we obtain the formula for counting achiral steric trees, thus setting a problem first enunciated by van't Hoff and Le Bel in 1874.     

Application of multisine nanoscale impedance microscopy to heterogeneous alloy surface investigations

In the recent years atomic force microscopy is recognized as valuable tool for investigation of surficial features of construction materials. It concerns, among other things, studies of changes caused by such phenomena as galvanic corrosion, passivation associated with the growth of oxide layers, or sensitization of austenitic steels with the formation of carbide phases. In addition, atomic force microscopy allows easy coupling with impedance technique which is especially promising because of its versatility in investigations of both conductive and dielectric materials. The authors discuss the possibility of application of such type of measurement, known as impedance microscopy. Copyright © 2015 John Wiley & Sons, Ltd.     

Chemical ionization using CF3+: Efficient detection of small alkanes and fluorocarbons

The trifluoromethyl ion CF₃⁺ is evaluated as a chemical ionization (CI) precursor in a compact Fourier Transform Ion Cyclotron Resonance (FTICR) mass spectrometer. It reacts with alkanes by hydride abstraction allowing characterization and quantification of alkanes up to C4 and cyclic. With larger alkanes fragmentation occurs. Fluorocarbons react by fluoride abstraction. Rate coefficients have been measured for reaction with alkanes, fluoroalkanes, chlorofluoroalkanes as well as several common VOCs. Use of CF₃⁺ for trace analysis in air has been tested on an air sample containing traces of acetone, toluene, benzene and cyclohexane. The results are consistent with those obtained with H₃O⁺ precursor and allow additional cyclohexane quantification.     

Mechanistic investigations on the heterogeneous solid-state reaction of magnesium amides and lithium hydrides

Isothermal and non-isothermal kinetic measurements on the chemical reaction between Mg(NH2)(2) and LiH, as well as the thermal decomposition of Mg(NH(2))(2), give apparent activation energies of 88.1 and 130 kJ/mol, respectively, which reveal that the thermal decomposition of Mg(NH2)(2) is unlikely to be an elementary step in the chemical reaction of Mg(NH2)(2) and 2LiH. The H-D exchange between H(delta+) in Mg(NH2)(2) and D(delta-) in LiD gives evidence for the coordinated interaction between amide and hydride. The observed linear and nonlinear kinetic growth in the reaction of Mg(NH2)(2)-2LiH indicates that the reaction rate is controlled by the interface reaction in the early stage of the reaction and by mass transport through the imide layer in the later stage. Both particle size and degree of mixing of the reacting species affect the overall kinetics of the reactions.