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1.
Here we explore DNA binding by a family of ruthenium(II) polypyridyl complexes using an atomic force microscope (AFM) and optical tweezers. We demonstrate using AFM that Ru(bpy)2dppz2+ intercalates into DNA (K(b) = 1.5 x 10(5) M(-1)), as does its close relative Ru(bpy)2dppx2+ (K(b) = 1.5 x 10(5) M(-1)). However, intercalation by Ru(phen)3(2+) and other Ru(II) complexes with K(b) values lower than that of Ru(bpy)2dppz2+ is difficult to determine using AFM because of competing aggregation and surface-binding phenomena. At the high Ru(II) concentrations required to evaluate intercalation, most of the DNA strands acquire a twisted, curled conformation that is impossible to measure accurately. The condensation of DNA on mica in the presence of polycations is well known, but it clearly precludes the accurate assessment by AFM of DNA intercalation by most Ru(II) complexes, though not by ethidium bromide and other monovalent intercalators. When stretching individual DNA molecules using optical tweezers, the same limitation on high metal concentration does not exist. Using optical tweezers, we show that Ru(phen)2dppz2+ intercalates avidly (K(b) = 3.2 x 10(6) M(-1)) whereas Ru(bpy)3(2+) does not intercalate, even at micromolar ruthenium concentrations. Ru(phen)3(2+) is shown to intercalate weakly (i.e., at micromolar concentrations (K(b) = 8.8 x 10(3) M(-1))). The distinct differences in DNA stretching behavior between Ru(phen)3(2+) and Ru(bpy)3(2+) clearly illustrate that intercalation can be distinguished from groove binding by pulling the DNA with optical tweezers. Our results demonstrate both the benefits and challenges of two single-molecule methods of exploring DNA binding and help to elucidate the mode of binding of Ru(phen)3(2+).  相似文献   

2.
New mixed polypyridyl {HPIP = 2-(2-hydroxyphenyl)imidazo[4,5-f][1,10]phenanthroline, phen = 1,10-phenanthroline, dmp = 2,9-dimethyl-1,10-phenanthroline, dmb = 4,4-dimethyl-2,2-bipyridine} ruthenium(II) complexes [Ru(phen)2(HPIP)]2+, [Ru(dmp)2(HPIP)]2+ and [Ru(dmb)2(HPIP)]2+ were synthesized and characterized by elemental analyses 1H-n.m.r., u.v.–vis. spectroscopy and cyclic voltammetry. Their DNA-binding properties were demonstrated by absorption, luminescence titrations, steady-state emission quenching and viscosity measurements. The results suggested that all the examined complexes bind with CT-DNA intercalatively. Methyl groups substituted at the 4,4-positions of bpy has no obvious effect on its DNA binding, whereas substituents at the 2- and 9-positions of phen have an impressive effect on its DNA-binding, as revealed by the decreased binding affinity.  相似文献   

3.
Three half-sandwich ruthenium(II) complexes with hydroxyl group functionalized Schiff-base ligands [Ru(p-cymene)LCl] ( 2a-2c ) have been synthesized and characterized. All ruthenium complexes were fully characterized by 1H and 13C NMR spectra, mass spectrometry and infrared spectrometry. The molecular structure of ruthenium complex 2c was confirmed by single-crystal X-ray diffraction methods. Furthermore, these half-sandwich ruthenium complexes were found to exhibit high catalytic activity for nitro compounds reduction using NaBH4 reducing agent in the presence of cetyltrimethylammonium bromide (CTAB) in water at room temperature.  相似文献   

4.
The hydrogen bonding and deprotonation processes between four ruthenium biimidazole complexes, namely [Ru(bpy)(2)(BiimH(2))](PF(6))(2) (1, bpy is bipyridine, BiimH(2) is 2,2'-biimidazole), [Ru(bpy)(2)-(BbimH(2))](PF(6))(2) (2, BbimH(2) is 2,2'-bibenzimidazole), and [Ru(bpy)(2)(DMBbimH(2))](PF(6))(2) (3, DMBbimH(2) is 7,7'-dimethyl-2,2'-bibenzimidazole) and [Ru(bpy)(2)(TMBbimH(2))](2+) (4, TMBbimH(2) is 5,6,5',6'-tetramethyl-2,2'-bibenzimidazole), and acetate are investigated. Their hydrogen bonded adducts are indeed trapped and observed by absorption spectra and electrochemical experiments in acetonitrile solution in the presence of an excess of acetic acid for the first time. The binding constants log K(B) for these adducts are 6.74 for 1·OAc, 7.11 for 2·OAc, 7.26 for 3·OAc, and 6.99 for 4·OAc. A new approach to calculate the deprotonation constant is also developed by establishing a set of circular equilibria. The equilibrium constants for the first deprotonation step of the complexes log K(A) are 2.74 for 1, 5.19 for 2, 4.54 for 3, and 3.78 for 4. The pK(a1) values of the complexes in acetonitrile solution are calculated by subtracting log K(A) from pK(a) (HOAc in acetonitrile), giving 19.6 for 1, 17.1 for 2, 17.8 for 3, and 18.5 for 4. The degree of proton transfer (D(PT)) can be quantified by the calculation of absorption spectral and redox data, which is 0.41 for 1·OAc, 0.53 for 2·OAc, 0.57 for 3·OAc, and 0.47 for 4·OAc. Interestingly, the binding constant log K(B) (7.26) and D(PT) value (0.57) both reach their maxima at a critical point, where pK(a1) for the complex is 17.8 and ΔpK(a) for the adduct is 4.5 (ΔpK(a) = pK(a)(HOAc) - pK(a1), in acetonitrile solution). Moreover, the binding constant log K(B) shows linear correlation with the degree of proton transfer D(PT).  相似文献   

5.
Ruthenium(II) polypyridyl complexes [Ru(phen)2(APIP)](ClO4)21 and [Ru(phen)2(HAPIP)](ClO4)22 have been synthesized and characterized. The DNA-binding behaviors were investigated by electronic absorption titration, luminescence spectra, viscosity measurements, thermal denaturation and photoactivated cleavage. The DNA-binding constants Kb for complexes 1 and 2 were determined to be 3.38 (±0.42) × 105 M−1 (s = 1.48) and 3.93 (±0.60) × 105 M−1 (s = 3.14), respectively. The studies on the photocleavage demonstrated that the effects of cleavage are concentration-dependent. The results showed that complexes 1 and 2 interact with CT-DNA by intercalative mode. The cytotoxicity of complexes 1 and 2 has been evaluated by MTT method. The apoptosis assay was carried out with acridine orange/ethidium bromide (AO/EB) staining methods. The cellular uptake showed that complexes can enter into the cytoplasm and accumulate in the nuclei. The antioxidant activity studies suggested that the ligands and complexes may be potential drugs to eliminate the radical.  相似文献   

6.
Several dihydrogen complexes of ruthenium of the form [Cp/Cp*Ru(P-P)H(2)](+) (P-P = chelating diphosphine ligand) have been prepared by reaction of the corresponding neutral chloride complexes with H(2) in the presence of NaB(ArF)(4). Treatment with D(2) or T(2) gas leads to incorporation of deuterium or tritium in the dihydrogen ligand. Measurement of the resulting H-D and H-T couplings as a function of the temperature and magnetic field gives results consistent with computational studies which predict that the H-H bond distance will increase with temperature and will be significantly shortened by isotopic substitution. The degree of the observed temperature dependence is found to be a critical function of the ancillary ligand set.  相似文献   

7.
Electrospray ionisation mass spectrometry was used to investigate reactions between six ruthenium compounds and three different non self-complementary duplex oligonucleotides containing 16 base pairs. Each of the compounds studied formed non-covalent complexes containing between one and five ruthenium molecules bound to DNA. Competition experiments involving duplex 16mers and pairs of ruthenium compounds were used to determine the order of relative binding affinities of the metal compounds. Other competition experiments involving ruthenium compounds, and the organic DNA binding agents daunomycin and distamycin, provided information about the sites and modes of DNA binding of the ruthenium compounds.  相似文献   

8.
The new polypyridyl ligand MIP {MIP = 2-(2,3-methylenedioxyphenyl)imidazo[4,5-f]1,10-phenanthroline} and its ruthenium(II) complexes [Ru(phen)2(MIP)]2+ (1) (phen = 1,10-phenanthroline) and [Ru(dmp)2(MIP)]2+ (2) (dmp = 2,9-dimethyl-1,10-phenanthroline) were synthesized and characterized by elemental analysis, MS and 1H NMR spectroscopy. The DNA-binding properties of the two complexes to calf-thymus DNA (CT-DNA) were investigated by different spectrophotometric methods and viscosity measurements, as well as equilibrium dialysis and circular dichroism spectroscopy. The results suggest that complex 1 binds to CT-DNA through intercalation, and complex 2 binds to CT-DNA via a partial intercalative mode. This difference in binding mode probably is caused by the different ancillary ligands. Also, when irradiated at 400 nm, complex 1 was found to be a more-effective DNA-cleaving agent than complex 2.  相似文献   

9.
The thermodynamics of the binding of the antitumor ammine, amine, and immine complexes of ruthenium(II) and ruthenium(III) to DNA and peptides was studied computationally using model molecules. We performed density functional calculations on several monofunctional ruthenium complexes of the formula [Ru(NH3)5B]z+, where B is an adenine, guanine, or cytosine nucleobase or an 4-methylimidazole, a dimethylthioether, or a dimethylphosphate anion and z = 2 and 3. The pentammineruthenium fragment has been intensively studied and also constitutes a good model for a wide class of antitumor ammine, amine, and imine complexes of Ru(II) and Ru(III), while the considered bases/ligands have been chosen as models for the main binding sites of DNA, nucleobases, and phosphate backbone and proteins, histidyl, and sulfur-containing residue such as methionine or cysteine. Bond dissociation enthalpies and free energies have been calculated for all the considered metal binding sites both in the gas phase and in solution and allow building a binding affinity order for the considered nucleic acid or protein binding sites. The binding of guanine to some bifunctional complexes, [Ru(NH3)(4)Cl2], [cis-RuCl(2)(bpy)2], and [cis-RuCl(2)(azpy)2], has also been considered to evaluate the effect of a second labile chloro or aquo ligand and more realistic polypyridyl and arylazopyridine ligands.  相似文献   

10.
Three ruthenium(II) complexes, [Ru(CO)Cl(PPh3)L], [Ru(CO)Cl(AsPh3)L] and [Ru(CO)Cl(Py)L], were synthesized from the reactions of 2-(benzothiazol-2-yliminomethyl)-phenol (HL) with [RuHCl(CO)B(EPh3)2], where B = PPh3, AsPh3 or pyridine, and E = P or As. All the complexes have been characterized by physicochemical and spectroscopic methods. The structure of the free ligand HL was determined by single crystal X-ray diffraction. The binding of the free ligand and its complexes with CT-DNA was studied using electronic absorption spectroscopy. In addition, the free ligand and its complexes were subjected to antioxidant activity tests, which showed that they all possess significant scavenging effects against DPPH and OH radicals. The in vitro cytotoxicities of the compounds were assessed using tumor (HeLa and MCF-7) cell lines.  相似文献   

11.
The catalytic activity of the terdentate complex [RuCl(CNN)(dppb)] (A) [dppb=Ph(2)P(CH(2))(4)PPh(2); HCNN=6-(4'-methylphenyl)-2-pyridylmethylamine] in the transfer hydrogenation of acetophenone (S) with 2-propanol has been found to be dependent on the base concentration. The limit rate has been observed when NaOiPr is used in high excess (A/base molar ratio > 10). The amino-isopropoxide species [Ru(OiPr)(CNN)(dppb)] (B), which forms by reaction of A with sodium isopropoxide via displacement of the chloride, is catalytically active. The rate of conversion of acetophenone obeys second-order kinetics v=k[S][B] with the rate constants in the range 218+/-8 (40 degrees C) to 3000+/-70 M(-1) s(-1) (80 degrees C). The activation parameters, evaluated from the Eyring equation are DeltaH(++)=14.0+/-0.2 kcal mol(-1) and DeltaS(++)=-3.2 +/-0.5 eu. In a pre-equilibrium reaction with 2-propanol complex B gives the cationic species [Ru(CNN)(dppb)(HOiPr)](+)[OiPr](-) (C) with K approximately 2x10(-5) M. The hydride species [RuH(CNN)(dppb)] (H), which forms from B via beta-hydrogen elimination process, catalyzes the reduction of S and, importantly, its activity increases by addition of base. The catalytic behavior of the hydride H has been compared to that of the system A/NaOiPr (1:1 molar ratio) and indicates that the two systems are equivalent.  相似文献   

12.
We have synthesized ruthenium(II) polypyridyl complexes (1) Ru(II)(bpy)(2)(L(1)), (2) Ru(II)(bpy)(2)(L(2)) and (3) Ru(II)(bpy)(L(1))(L(2)), where bpy = 2,2'-bipyridyl, L(1) = 4-[2-(4'-methyl-2,2'-bipyridinyl-4-yl)vinyl]benzene-1,2-diol) and L(2) = 4-(N,N-dimethylamino-phenyl)-(2,2'-bipyridine) and investigated the intra-ligand charge transfer (ILCT) and ligand-ligand charge transfer (LLCT) states by optical absorption and emission studies. Our studies show that the presence of electron donating -NMe(2) functionality in L(2) and electron withdrawing catechol fragment in L(1) ligands of complex 3 introduces low energy LLCT excited states to aboriginal MLCT states. The superimposed LLCT and MLCT state produces redshift and broadening in the optical absorption spectra of complex 3 in comparison to complexes 1 and 2. The emission quantum yield of complex 3 is observed to be extremely low in comparison to that of complex 1 and 2 at room temperature. This is attributed to quenching of the (3)MLCT state by the low-emissive (3)LLCT state. The emission due to ligand localized CT state (ILCT and LLCT) of complexes 2 and 3 is revealed at 77 K in the form of a new luminescence band which appeared in the 670-760 nm region. The LLCT excited state of complex 3 is populated either via direct photoexcitation in the LLCT absorption band (350-700 nm) or through internal conversion from the photoexcited (3)MLCT (400-600 nm) states. The internal conversion rate is determined by quenching of the (3)MLCT state in a time resolved emission study. The internal conversion to LLCT and ILCT excited states are observed to be as fast as ~200 ps and ~700 ps for complexes 3 and 2, respectively. The present study illustrates the photophysical property of the ligand localized excited state of newly synthesized heteroleptic ruthenium(II) polypyridyl complexes.  相似文献   

13.
Sui LZ  Yang WW  Yao CJ  Xie HY  Zhong YW 《Inorganic chemistry》2012,51(3):1590-1598
A dimetallic biscyclometalated ruthenium complex, [(bpy)(2)Ru(dpb)Ru(bpy)(2)](2+) (bpy = 2,2'-bipyridine; dpb = 1,4-di-2-pyridylbenzene), with a tris-bidentate coordination mode has been prepared. The electronic properties of this complex were studied by electrochemical and spectroscopic analysis and DFT/TDDFT calculations on both rac and meso isomers. Complex [(bpy)(2)Ru(dpb)Ru(bpy)(2)](2+) has a similar 1,4-benzenedicyclometalated ruthenium (Ru-phenyl-Ru) structural component with a previously reported bis-tridentate complex, [(tpy)Ru(tpb)Ru(tpy)](2+) (tpy = 2,2';6',2″-terpyridine; tpb = 1,2,4,5-tetra-2-pyridylbenzene). The charge delocalizations of these complexes across the Ru-phenyl-Ru array were investigated and compared by studying the corresponding one-electron-oxidized species, generated by chemical oxidation or electrochemical electrolysis, with DFT/TDDFT calculations and spectroscopic and EPR analysis. These studies indicate that both [(bpy)(2)Ru(dpb)Ru(bpy)(2)](3+) and [(tpy)Ru(tpb)Ru(tpy)](3+) are fully delocalized systems. However, the coordination mode of the metal component plays an important role in influencing their electronic properties.  相似文献   

14.
Ruthenium polypyridyl complexes which can sensitise the photo-oxidation of nucleic acids and other biological molecules show potential for photo-therapeutic applications. In this article a combination of transient visible absorption (TrA) and time-resolved infra-red (TRIR) spectroscopy are used to compare the photo-oxidation of guanine by the enantiomers of [Ru(TAP)2(dppz)]2+ in both polymeric {poly(dG-dC), poly(dA-dT) and natural DNA} and small mixed-sequence duplex-forming oligodeoxynucleotides. The products of electron transfer are readily monitored by the appearance of a characteristic TRIR band centred at ca. 1700 cm−1 for the guanine radical cation and a band centered at ca. 515 nm in the TrA for the reduced ruthenium complex. It is found that efficient electron transfer requires that the complex be intercalated at a G-C base-pair containing site. Significantly, changes in the nucleobase vibrations of the TRIR spectra induced by the bound excited state before electron transfer takes place are used to identify preferred intercalation sites in mixed-sequence oligodeoxynucleotides and natural DNA. Interestingly, with natural DNA, while it is found that quenching is inefficient in the picosecond range, a slower electron transfer process occurs, which is not found with the mixed-sequence duplex-forming oligodeoxynucleotides studied.

Efficient electron transfer requires the complex to be intercalated at a G-C base-pair. Identification of preferred intercalation sites is achieved by TRIR monitoring of the nucleobase vibrations before electron transfer.  相似文献   

15.
The synthesis and characterization of six ruthenium(II) bistridentate polypyridyl complexes is described. These were designed on the basis of a new approach to increase the excited-state lifetime of ruthenium(II) bisterpyridine-type complexes. By the use of a bipyridylpyridyl methane ligand in place of terpyridine, the coordination environment of the metal ion becomes nearly octahedral and the rate of deactivation via ligand-field (i.e., metal-centered) states was reduced as shown by temperature-dependent emission lifetime studies. Still, the possibility to make quasi-linear donor-ruthenium-acceptor triads is maintained in the complexes. The most promising complex shows an excited-state lifetime of tau = 15 ns in alcohol solutions at room temperature, which should be compared to a lifetime of tau = 0.25 ns for [Ru(tpy)2]2+. The X-ray structure of the new complex indeed shows a more octahedral geometry than that of [Ru(tpy)2]2+. Most importantly, the high excited-state energy was retained, and thus, so was the potential high reactivity of the excited complex, which has not been the case with previously published strategies based on bistridentate complexes.  相似文献   

16.
Lanthanide(III) complexes [Ln(pyphen)(acac)(2)(NO(3))] (1, 2), [Ln(pydppz)(acac)(2)(NO(3))] (3, 4) and [La(pydppz)(anacac)(2)(NO(3))] (5), where Ln is La(III) (in 1, 3, 5) and Gd(III) (in 2, 4), pyphen is 6-(2-pyridyl)-1,10-phenanthroline, pydppz is 6-(2-pyridyl)-dipyrido[3,2-a:2',3'-c]phenazine, anacac is anthracenylacetylacetonate and acac is acetylacetonate, were prepared, characterized and their DNA photocleavage activity and photocytotoxicity studied. The crystal structure of complex 2 displays a GdO(6)N(3) coordination. The pydppz complexes 3-5 show an electronic spectral band at ~390 nm in DMF. The La(III) complexes are diamagnetic, while the Gd(III) complexes are paramagnetic with seven unpaired electrons. The molar conductivity data suggest 1 : 1 electrolytic nature of the complexes in aqueous DMF. They are avid binders to calf thymus DNA giving K(b) in the range of 5.4 × 10(4)-1.2 × 10(6) M(-1). Complexes 3-5 efficiently cleave supercoiled DNA to its nicked circular form in UV-A light of 365 nm via formation of singlet oxygen ((1)O(2)) and hydroxyl radical (HO˙) species. Complexes 3-5 also exhibit significant photocytotoxic effect in HeLa cancer cells giving respective IC(50) value of 0.16(±0.01), 0.15(±0.01) and 0.26±(0.02) μM in UV-A light of 365 nm, while they are less toxic in dark with an IC(50) value of >3 μM. The presence of an additional pyridyl group makes the pydppz complexes more photocytotoxic than their dppz analogues. FACS analysis of the HeLa cells treated with complex 4 shows apoptosis as the major pathway of cell death. Nuclear localization of complex 5 having an anthracenyl moiety as a fluorophore is evidenced from the confocal microscopic studies.  相似文献   

17.
The UV/Visible absorption properties of a polypyridyl ruthenium complex upon intercalation on DNA are studied at the mixed quantum mechanics molecular mechanics level of theory. Vertical excitation transitions are computed by time dependent density functional theory. Particular emphasis is put on the different levels at which the macromolecular environment is treated, and in particular on the analysis of the effect of mechanical, electrostatic and polarizable embedding. We show that with the highest level of theory the experimental absorption wavelengths are reproduced with a difference of only 2 or 3 nm for the low energy bands. The systematic analysis of the individual vertical transitions allows us to get much more insights into the role played by the environment, in particular, in metal to ligand and intra ligand charge transfer transitions that can lead to the production of DNA oxidative lesions exploitable in phototherapy.  相似文献   

18.
19.
Overlayer thin films of vinylbipyridine (vbpy)-containing Ru and Zn complexes have been formed on top of ruthenium dye complexes adsorbed to TiO(2) by reductive electropolymerization. The goal was to create an efficient, water-stable photoelectrode or electrodes. An adsorbed-[Ru(vbpy)(2)(dcb)](PF(6))(2)/poly-[Ru(vbpy)(3)](PF(6))(2) surface composite displays excellent stability toward dissolution in water, but the added overlayer film greatly decreases incident photon-to-current conversion efficiencies (IPCE) in propylene carbonate with I(3)(-)/I(-) as the carrier couple. An ads-[Ru(vbpy)(2)(dcb)](PF(6))(2)/poly-[Zn(vbpy)(3)](PF(6))(2) composite displays no loss in IPCE compared to ads-[Ru(vbpy)(2)(dcb)](PF(6))(2) but is susceptible to film breakdown in the presence of water by solvolysis and loss of the cross-linking Zn(2+) ions. Success was attained with an ads-[Ru(vbpy)(2)(dcb)](PF(6))(2)/poly-[Ru(vbpy)(2)(dppe)](PF(6))(2) composite. In this case the electropolymerized layer is transparent in the visible. The composite electrode is stable in water, the IPCE in propylene carbonate with I(3)(-)/I(-) is comparable to the adsorbed complex, and a significant IPCE is observed in water with the quinone/hydroquinone carrier couple. The assembly [(bpy)(2)(CN)Ru(CN)Ru(vbpy)(2)(NC)Ru(CN)(bpy)(2)](PF(6))(2) ([Ru(CN)Ru(NC)Ru](PF(6))(2)) adsorbs spontaneously on TiO(2), and electropolymerization of thin layers of the assembly to give ads-[Ru(CN)Ru(NC)Ru](PF(6))(2)/poly-[Ru(CN)Ru(NC)Ru](PF(6))(2) enhances IPCE and has no deleterious effect on the IPCE/Ru.  相似文献   

20.
A Schiff base (HL) has been synthesized and characterized by physico-chemical, spectroscopic and X-ray crystallography studies. Three of its Ru(III) complexes were synthesized and characterized by analytical and spectroscopic studies. The DNA binding properties of HL and its Ru(III) complexes have been investigated by electronic absorption spectroscopy. Also, HL and its Ru(III) complex [RuCl2(AsPh3)L] were tested for DNA cleavage properties. The results showed that the complex cleaves DNA more rapidly than the free ligand. Further, an in vitro study of the cytotoxicity of HL and the complex [RuCl2(AsPh3)L] was carried out.  相似文献   

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