Photoelectron spectroscopic study of the hydrated nucleoside anions: Uridine(-)(H(2)O)(n=0-2), cytidine(-)(H(2)O)(n=0-2), and thymidine(-)(H(2)O)(n=0,1)

The hydrated nucleoside anions, uridine(-)(H(2)O)(n=0-2), cytidine(-)(H(2)O)(n=0-2), and thymidine(-)(H(2)O)(n=0,1), have been prepared in beams and studied by anion photoelectron spectroscopy in order to investigate the effects of a microhydrated environment on parent nucleoside anions. Vertical detachment energies (VDEs) were measured for all eight anions, and from these, estimates were made for five sequential anion hydration energies. Excellent agreement was found between our measured VDE value for thymidine(-)(H(2)O)(1) and its calculated value in the companion article by S. Kim and H. F. Schaefer III.     

Sequential hydration energies of the sulfate ion, from determinations of the equilibrium constants for the gas-phase reactions: SO4(H2O)(n)2- = SO4(H2O)(n-1)2- + H2O

Sequential hydration energies of SO4(H2O)(n)2- were obtained from determinations of the equilibrium constants of the following reactions: SO4(H2O)(n)2- = SO4(H2O)(n-1)2- + H2O. The SO4(2-) ions were produced by electrospray and the equilibrium constants Kn,n-1 were determined with a reaction chamber attached to a mass spectrometer. Determinations of Kn,n-1 at different temperatures were used to obtain DeltaG0n,n-1, DeltaH0 n,n-1, and DeltaS0n,n-1 for n = 7 to 19. Interference of the charge separation reaction SO4(H2O)(n)2- = HSO4(H2O)(n-k)- + OH(H2O)(k-1)- at higher temperatures prevented determinations for n < 7. The DeltaS0n,n-1 values obtained are unusually low and this indicates very loose, disordered structures for the n > or = 7 hydrates. The DeltaH0n,n-1 values are compared with theoretical values DeltaEn,n-1, obtained by Wang, Nicholas, and Wang. Rate constant determinations of the dissociation reactions n,n - 1, obtained with the BIRD method by Wong and Williams, showed relatively lower rates for n = 6 and 12, which indicate that these hydrates are more stable. No discontinuities of the DeltaG0n,n-1 values indicating an unusually stable n = 12 hydrate were observed in the present work. Rate constants evaluated from the DeltaG0n,n-1 results also fail to indicate a lower rate for n = 12. An analysis of the conditions used in the two types of experiments indicates that the different results reflect the different energy distributions expected at the dissociation threshold. Higher internal energies prevail in the equilibrium measurements and allow the participation of more disordered transition states in the reaction.     

Clusters of hydrated methane sulfonic acid CH3SO3H.(H2O)n (n = 1-5): a theoretical study

Ab initio and density functional methods have been used to examine the structures and energetics of the hydrated clusters of methane sulfonic acid (MSA), CH3SO3H.(H2O)n (n = 1-5). For small clusters with one or two water molecules, the most stable clusters have strong cyclic hydrogen bonds between the proton of OH group in MSA and the water molecules. With three or more water molecules, the proton transfer from MSA to water becomes possible, forming ion-pair structures between CH3SO3- and H3O+ moieties. For MSA.(H2O)3, the energy difference between the most stable ion pair and neutral structures are less than 1 kJ/mol, thus coexistence of neutral and ion-pair isomers are expected. For larger clusters with four and five water molecules, the ion-pair isomers are more stable (>10 kJ/mol) than the neutral ones; thus, proton transfer takes place. The ion-pair clusters can have direct hydrogen bond between CH3SO3- and H3O+ or indirect one through water molecule. For MSA.(H2O)5, the energy difference between ion pairs with direct and indirect hydrogen bonds are less than 1 kJ/mol; namely, the charge separation and acid ionization is energetically possible. The calculated IR spectra of stable isomers of MSA.(H2O)n clusters clearly demonstrate the significant red shift of OH stretching of MSA and hydrogen-bonded OH stretching of water molecules as the size of cluster increases.     

Exploring the rich energy landscape of sulfate-water clusters SO4(2-) (H2O)(n=3-7): an electronic structure approach

We present a reinvestigation of sulfate-water clusters SO4(2-) (H2O)(n=3-7), which involves several new aspects. Using a joint molecular mechanics/first principles approach, we perform exhaustive searches for stable cluster geometries, showing that the sulfate-water landscape is much richer than anticipated previously. We check the compatibility of the new structures with experiment by comparing vertical detachment energies (VDEs) calculated at the B3LYP/6-311++G** level of theory and determine the energetic ordering of the isomers at the RI-MP2/aug-cc-pVTZ level. Our results are bench-marked carefully against reference energies of estimated CCSD(T)/aug-cc-VTZ quality and VDEs of CCSD(T)/aug-cc-pVDZ quality. Furthermore, we calculate anharmonic vibrational corrections for up to the n = 6 clusters, which are shown to be significant for isomer energy ordering. We use energy decomposition analysis (EDA) based on the absolutely localized fragment (ALMO) expansion to gain chemical insight into the binding motifs.     

A uranyl sulfate cluster in Na10[(UO2)(SO4)4](SO4)2·3H2O

Decasodium uranyl hexa­sulfate trihydrate, Na₁₀[(UO₂)(SO₄)₄](SO₄)₂·3H₂O, contains an unusual uranyl sulfate cluster with the composition [(UO₂)(SO₄)₄]^6?. The cluster is composed of a uranyl pentagonal bipyramid and four sulfate tetrahedra. Three sulfate tetrahedra are linked to the uranyl pentagonal bipyramid by the sharing of vertices, and the other shares an equatorial edge of the uranyl pentagonal bipyramid. The uranyl sulfate clusters occur in layers parallel to (010). The structure also contains two isolated symmetrically distinct sulfate tetrahedra, which also occur in layers parallel to (010). The uranyl sulfate clusters and isolated sulfate tetrahedra are linked through bonds to Na⁺ cations, and by hydrogen bonding involving the water molecules.     

Comparison of hydrated hydroperoxide anion (HOO-)(H2O)n clusters with alkaline hydrogen peroxide (HOOH)(OH-)(H2O)(n-1) clusters, n = 1-8, 20: an ab initio study

Hydroperoxide anion (HOO(-)), the conjugate base of hydrogen peroxide (HOOH), has been relatively little studied despite the importance of HOOH in commercial processes, atmospheric science, and biology. The anion has been shown to exist as a stable species in alkaline water. This project explored the structure of gas phase (HOO(-))(H(2)O)(n) clusters and identified the lowest energy configurations for n ≤ 8 at the B3LYP/6-311++G** level of theory and for n ≤ 6 at the MP2/aug-cc-pVTZ level of theory. As a start toward understanding equilibration between HOO(-) and HOOH in an alkaline environment, (HOOH)(OH(-))(H(2)O)(n-1) clusters were likewise examined, and the lowest energy configurations were determined for n ≤ 8 (B3LYP/6-311++G**) and n ≤ 6 (MP2/aug-cc-pVTZ). Some studies were also done for n = 20. The two species have very different solvation behaviors. In low energy (HOOH)(OH(-))(H(2)O)(n-1) clusters, HOOH sits on the surface of the cluster, is 4-coordinated (each O is donor once and acceptor once), and donates to the hydroxide ion. In contrast, in low energy (HOO(-))(H(2)O)(n) clusters, (HOO(-)) takes a position in the cluster center surrounded on all sides by water molecules, and its optimum coordination number appears to be 7 (one O is donor-acceptor-acceptor while the other is a 4-fold acceptor). For n ≤ 6 the lowest (HOOH)(OH(-))(H(2)O)(n-1) cluster lies 1.0-2.1 kcal/mol below the lowest (HOO(-))(H(2)O)(n) cluster, but the lowest clusters found for n = 20 favor (HOO(-))(H(2)O)(20). The results suggest that ambient water could act as a substantial kinetic brake that slows equilibration between (HOOH)(OH(-)) and (HOO(-))(H(2)O) because extensive rearrangement of solvation shells is necessary to restabilize either species after proton transfer.     

Association patterns in (HF)(m)(H2O)(n) (m + n = 2-8) clusters

In an attempt to understand the phase behavior of aqueous hydrogen fluoride, the clustering in the mixture is investigated at the molecular level. The study is performed at the mPW1B95/6-31+G(d,p) level of theory. Several previous studies attempted to describe the dissociation of HF in water, but in this investigation, the focus is only on the association patterns that are present in this binary mixture. A total of 214 optimized geometries of (HF)n(H2O)m clusters, with m + n as high as 8, were investigated. For each cluster combination, several different conformations are investigated, and the preferred conformations are presented. Using multiple linear regressions, the average strengths of the four possible H-bonding interactions are obtained. The strongest H-bond interaction is reported to be the H2O...H-F interaction. The most probable distributions of mixed clusters as a function of composition are also deduced. It is found that the larger (HF)n(H2O)m clusters are favored both energetically and entropically compared to the ones that are of size m + n < or = 3. Also, the clusters with equimolar contributions of HF and H2O are found to have the strongest interactions.     

Microsolvation pattern of the hydrated radical anion of uracil: U-(H2O)n (n = 3-5)

The microsolvation patterns of the uracil radical anion in water clusters U-(H2O)n with n ranging from 3 to 5 were investigated by the density functional theory approach. The electron detachment energies (VDE) of the stable anionic complexes with different numbers of hydration water are predicted. The linear dependence of the VDE value of the most stable anionic complexes with respect to the hydration number suggests the importance of the clustered waters in the microsolvation of the radical anion of the nucleobases. The formation of the water clusters is found to be necessary in the most stable conformers of the tri-, tetra-, and pentahydrated radical anion of uracil. The microsolvation pattern with three or more well-separated hydration water molecules in the first hydration layer is less stable than the arrangement with the waters in tight clusters. The charge transfer between the anionic uracil and the hydration water is high. Good agreement between the experimental and the theoretical vertical detachment energy yield in this study further demonstrates the practicability of the B3LYP/DZP++ approach in the study of radical anions of the DNA subunits.     

Structure and bonding in cyclic isomers of B2AlH(n)(m) (n = 3-6, m = -2 to +1): a comparative study with B3H(n)(m), BAl2H(n)(m) and Al3H(n)(m)

The structure, bonding and energetics of B(2)AlH(n)(m) (n = 3-6, m = -2 to +1) are compared with corresponding homocyclic boron, aluminum analogues and BAl(2)H(n)(m) using density functional theory (DFT). Divalent to hexacoordinated boron and aluminum atoms are found in these species. The geometrical and bonding pattern in B(2)AlH(4)(-) is similar to that for B(2)SiH(4). Species with lone pairs on the divalent boron and aluminum atoms are found to be minima on the potential energy surface of B(2)AlH(3)(2-). A dramatic structural diversity is observed in going from B(3)H(n)(m) to B(2)AlH(n)(m), BAl(2)H(n)(m) and Al(3)H(n)(m) and this is attributable to the preference of lower coordination on aluminum, higher coordination on boron and the higher multicenter bonding capability of boron. The most stable structures of B(3)H(6)(+), B(2)AlH(5) and BAl(2)H(4)(-) and the trihydrogen bridged structure of Al(3)H(3)(2-) show an isostructural relationship, indicating the isolobal analogy between trivalent boron and divalent aluminum anion.     

Ab initio molecular orbital investigation of the amine-alanes (CH(3))(n)H(3)(-)(n)AlNX(3) and phosphane-alanes (CH(3))(n)H(3)(-)(n)AlPX(3) (X = H, F, and Cl; n = 0-3) complexes

We report on ab initio calculations at the G2(MP2) level of the structures and Al-N(P) bond complexation energies of the (CH(3))(n)H(3)(-)(n)AlNX(3) and (CH(3))(n)H(3)(-)(n)()AlPX(3) (X = H, F, and Cl; n = 0-3) donor-acceptor complexes. For the (CH(3))(3)AlNX(3) and (CH(3))(3)AlPX(3) complexes, the C(3)(v) symmetry is found to be favored, and for the other complexes the C(s) symmetry is found to be favored. The G2(MP2) calculated complexation energies show for the amine ligands the trend NH(3) > NCl(3) > NF(3). A similar trend PH(3) approximately PCl(3) > PF(3) is predicted for the phosphane ligands. The NBO partitioning scheme shows that there is no correlation between the stability and the charge transfer.     

Global search for minimum energy (H2O)n clusters, n = 3-5

The Gaussian-3 (G3) model chemistry method has been used to calculate the relative deltaG(o) values for all possible conformers of neutral clusters of water, (H2O)n, where n = 3-5. A complete 12-fold conformational search around each hydrogen bond produced 144, 1728, and 20,736 initial starting structures of the water trimer, tetramer, and pentamer. These structures were optimized with PM3, followed by HF/6-31G* optimization, and then with the G3 model chemistry. Only two trimers are present on the G3 potential energy hypersurface. We identified 5 tetramers and 10 pentamers on the potential energy and free-energy hypersurfaces at 298 K. None of these 17 structures were linear; all linear starting models folded into cyclic or three-dimensional structures. The cyclic pentamer is the most stable isomer at 298 K. On the basis of this and previous studies, we expect the cyclic tetramers and pentamers to be the most significant cyclic water clusters in the atmosphere.     

Ultrafast dynamics of the SO2(H2O)n cluster system

An investigation of the excited-state dynamics of SO2(H2O)n (n = 1-5) clusters following excitation by ultrafast laser pulses to 4.7 eV (coupled 1A2 and 1B1 states) and 9.3 eV (F band) is presented. The findings for the coupled 1A2 and 1B1 states are in good agreement with published computational work and indicate the division of the initial excited-state population into the double well produced by the coupled states. A photoinduced ion-pair formation process is proposed as a likely source of the observed dynamic behavior following the 9.3 eV excitation. Energetics calculations are also presented that support the ion-pair mechanism. A lack of cluster size dependence in the measured time constants indicate surface solvation of SO2 rather than a cluster structure with the SO2 molecule fully encompassed by water molecules.     

The structures and electronic states of zinc-water clusters Zn(n)(H2O)(m) (n = 1-32 and m = 1-3)

Ab initio and Density Functional Theory (DFT) calculations have been carried out for zinc-water clusters Zn(n)-(H2O)(m) (n = 1-32 and m = 1-3, where n and m are the numbers of zinc atoms and water molecules, respectively) to elucidate the structure and electronic states of the clusters and the interaction of zinc cluster with water molecules. The binding energies of H2O to zinc clusters were small at n = 2-3 (2.3-4.2 kcal mol(-1)), whereas the energy increased significantly in n = 4 (9.0 kcal mol(-1)). Also, the binding nature of H2O was changed at n = 4. The cluster size dependency of the binding energy of H2O accorded well with that of the natural population of electrons in the 4p orbital of the zinc atom. In the larger clusters (n > 20), it was found that the zinc atoms in surface regions of the zinc cluster have a positive charge, whereas those in the interior region have a negative charge with the large electron population in the 4p orbital. The interaction of H2O with the zinc clusters were discussed on the basis of the theoretical results.     

In search of CS2(H2O)(n=1-4) clusters

Gaussian-3 and MP2/aug-cc-pVnZ methods have been used to calculate geometries and thermochemistry of CS(2)(H2O)n, where n=1-4. An extensive molecular dynamics search followed by optimization using these two methods located two dimers, six trimers, six tetramers, and two pentamers. The MP2/aug-cc-pVDZ structure matched best with the experimental result for the CS(2)(H2O) dimer, showing that diffuse functions are necessary to model the interactions found in this complex. For larger CS(2)(H2O)n clusters, the MP2/aug-cc-pVDZ minima are significantly different from the MP2(full)6-31G* structures, revealing that the G3 model chemistry is not suitable for investigation of sulfur containing van der Waals complexes. Based on the MP2/aug-cc-pVTZ free energies, the concentration of saturated water in the atmosphere and the average amount of CS(2) in the atmosphere, the concentrations of these clusters are predicted to be on the order of 10(5) CS(2)(H2O) clusters.cm(-3) and 10(2) CS(2)(H2O)(2) clusters.cm(-3) at 298.15 K. The MP2/aug-cc-pVDZ scaled harmonic and anharmonic frequencies of the most abundant dimer cluster at 298 K are presented, along with the MP2/aug-cc-pVDZ scaled harmonic frequencies for the CS(2)(H(2)O)(n) structures predicted to be present in a low-temperature molecular beam experiment.     

Microsolvation of the dicyanamide anion: [N(CN)(2)(-)](H(2)O)n (n = 0-12)

Photoelectron spectroscopy is combined with ab initio calculations to study the microsolvation of the dicyanamide anion, N(CN)(2)(-). Photoelectron spectra of [N(CN)(2)(-)](H2O)n (n = 0-12) have been measured at room temperature and also at low temperature for n = 0-4. Vibrationally resolved photoelectron spectra are obtained for N(CN)(2)(-), allowing the electron affinity of the N(CN)2 radical to be determined accurately as 4.135 +/- 0.010 eV. The electron binding energies and the spectral width of the hydrated clusters are observed to increase with the number of water molecules. The first five waters are observed to provide significant stabilization to the solute, whereas the stabilization becomes weaker for n > 5. The spectral width, which carries information about the solvent reorganization upon electron detachment in [N(CN)(2)(-)](H2O)n, levels off for n > 6. Theoretical calculations reveal several close-lying isomers for n = 1 and 2 due to the fact that the N(CN)(2)(-) anion possesses three almost equivalent hydration sites. In all the hydrated clusters, the most stable structures consist of a water cluster solvating one end of the N(CN)(2)(-) anion.     

Photoelectron imaging of Ag(-)(H2O)x and AgOH(-)(H2O)y (x=1,2, y=0-4)

The photoelectron images of Ag(-)(H(2)O)(x) (x=1,2) and AgOH(-)(H(2)O)(y) (y=0-4) are reported. The Ag(-)(H(2)O)(1,2) anionic complexes have similar characteristics to the other two coinage metal-water complexes that can be characterized as metal atomic anion solvated by water molecules with the electron mainly localized on the metal. The vibrationally well-resolved photoelectron spectrum allows the adiabatic detachment energy (ADE) and vertical detachment energy (VDE) of AgOH(-) to be determined as 1.18(2) and 1.24(2) eV, respectively. The AgOH(-) anion interacts more strongly with water molecules than the Ag(-) anion. The photoelectron spectra of Ag(-)(H(2)O)(x) and AgOH(-)(H(2)O)(y) show a gradual increase in ADE and VDE with increasing x and y due to the solvent stabilization.     

Synthetic ferric sulfate trihydrate,Fe2(SO4)3·3H2O,a new ferric sulfate salt

Ferric sulfate trihydrate has been synthesized at 403 K under hydrothermal conditions. The structure consists of quadruple chains of [Fe₂(SO₄)₃(H₂O)₃] parallel to [010]. Each quadruple chain is composed of equal proportions of FeO₄(H₂O)₂ octahedra and FeO₅(H₂O) octahedra sharing corners with SO₄ tetrahedra. The chains are joined to each other by hydrogen bonds. This compound is a new hydration state of Fe₂(SO₄)₃·nH₂O; minerals with n = 0, 5, 7.25–7.75, 9 and 11 are found in nature.     

First principles study on the solvation and structure of C2O4(2-)(H2O)n, n = 6-12

The structures and energies of hydrated oxalate clusters, C2O4(2-)(H2O)n, n = 6-12, are obtained by density functional theory (DFT) calculations and compared to SO4(2-)(H2O)n. Although the evolution of the cluster structure with size is similar to that of SO4(2-)(H2O)n, there are a number of important and distinctive futures in C2O4(2-)(H2O)n, including the separation of the two charges due to the C-C bond in C2O4(2-), the lower symmetry around C2O4(2-), and the torsion along the C-C bond, that affect both the structure and the solvation energy. The solvation dynamics for the isomers of C2O4(2-)(H2O)12 are also examined by DFT based ab initio molecular dynamics.     

Solvation-induced cluster anion core switching from NNO2(-)(N2O)n-1 to O(-)(N2O)n

We report a photoelectron imaging study of the [O(N(2)O)(n)](-), 0or=4 (and up to at least n=9) signatures of an O(-) core are predominantly observed. Photofragmentation studies at 355 nm support these results.