Intramolecular C-H···O hydrogen bonding in 1,4-dihydropyridine derivatives

The diastereotopy of the methylene protons at positions 2 and 6 in 1,4-dihydropiridine derivatives with various substituents has been investigated. NMR spectroscopy and quantum chemistry calculations show that the CH···O intramolecular hydrogen bond is one of the factors amplifying the chemical shift differences in the 1H-NMR spectra.     

An abnormal C-H?O bond directs intermolecular bonding arrangements in bisimines

N,N-bis(3-nitrobenzylidene)ethylenediamine (1) formed a supramolecule with meso-hydrobenzoin, whereas N,N-bis(4-nitrobenzylidene)ethylenediamine (2) underwent a self-assembling process. The X-ray diffraction analysis showed that C-H?O intermolecular contacts play an important role in the building of both structures.     

O?O bond homolysis in hydrogen peroxide

O O bond homolysis in hydrogen peroxide (H₂O₂) has been studied using theoretical methods of four conceptually different types: hybrid DFT (B3LYP, M06‐2X), double‐hybrid DFT (B2‐PLYP), coupled‐cluster (CCSD(T)), and multiconfigurational (CASPT2). In addition, the effects of basis set size have also been analyzed. For all of these methods, the O O bond homolysis in hydrogen peroxide has been found to proceed through hydrogen bonded radical pair complexes. Reaction barriers for collapse of the radical pairs to hydrogen peroxide are minute, leading to an overall very flat potential energy surface. However, hydrogen bonding energies in the radical pair complex expressed as the energy difference to two separate hydroxyl radicals are sizeable and exceed 10 kJ/mol for all theoretical methods considered in this study. © 2017 Wiley Periodicals, Inc.     

Existence of aromatic sp~2 C-H…O = C intramolecular interaction similar to hydrogen bond

A 'H NMR signal shifted drastically to down field (δ - 10.0) at the bay area and in dose proximity to C = O group for H-1 was observed through complete assignments of 1H NMR spectra for pyridino- and benzobenzanthrones. It is concluded that this phenomenon is due not only to the anisotropy effect of C=O plus aromatic ring current effect, but also to the electrostatic attraction of C-H (δ+)…O(δ-)=C interaction. The evidence for the sp2C-H…O = C intramolecular interaction similar to hydrogen bond has also been given by EI-MS and MS/MS (CID) spectroscopy and IR spectroscopy, as well as MNDO-PM3 calculations. This new kind of interaction might be called 'quasi-hydrogen bond'.     

A triple helical structure supported solely by C-H···O hydrogen bonding

A novel triple helical structure that is self-assembled by cationic molecules, 1-acetamido-3-(2-pyrazinyl)-imidazolium, is reported. The computational analysis underpins that the formation of the triple helix is driven by C-H···O hydrogen bonding.     

Experimental evidences for stereo-promoted intermolecular C-H···O hydrogen bonding in solution

The ¹H NMR data and the results of DFT quantum-chemical calculations indicate stereocontrolled formation of intermolecular C-H···O hydrogen bonds in aqueous solutions of L-(2S,3S)-2-(imidazol-1-yl)-3-methylpentan-1-ol.     

Intramolecular hydrogen bonds C-H?N in bisheterocyclic compounds according to 1H and 13C NMR data

Data of ¹H and ¹³C NMR spectra show that in 2,2??-bipyridyl, 1-vinyl-2(2??-pyridyl)benzimidazole, 1-vinyl-3-vinylsulfanyl-5-(2-furyl)-1,2,4-triazole, and 1-vinyl-5-vinylsulfanyl-3-(2-furyl)-5-vinylthio-1,2,4-triazole exists a weak intramolecular hydrogen bond between the heterocyclic fragments. It causes a downfield shift of the bridging proton signal in the ¹H NMR spectrum by 0.6?C0.7 ppm and an increase in the corresponding direct coupling constant ¹³C-¹H by 1.5?C2.0 Hz. These variations in the spectral parameters can be efficiently used in the conformational analysis for establishing with the use of NMR method which conformers are predominantly populated in the heterocyclic compounds.     

NMR study of 1-aryl-1,2-dicarba-closo-dodecaboranes: intramolecular C-H?O hydrogen bonding in solution

Dicarba-closo-dodecaborane(12) (carborane) has recently received much attention as a building block for supramolecular assemblies and bioactive compounds. Among carborane isomers, 1,2-dicarba-closo-dodecaborane(12) (o-carborane) has unique chemical properties, including the ability of the o-carborane C-H hydrogens to form hydrogen bonds. To evaluate intramolecular hydrogen bond formation between the o-carborane C-H hydrogen and various hydrogen bond acceptors in solution, we have designed and synthesized 1-aryl-o-carboranes 2. Intramolecular hydrogen bonding ability was evaluated by means of ¹H NMR measurement of the o-carborane C-H hydrogen signal of 2. The 1-(2-methoxyphenyl)-o-carborane derivative 2m appeared to form an intramolecular hydrogen bond between o-carborane C-H hydrogen and the oxygen atom acting as a hydrogen bonding acceptor. In this study, we present evidence for hydrogen bond formation in solution between the o-carborane C-H and hydrogen bond acceptors positioned with appropriate geometry.     

Where gold meets a hydrogen bond?

This is a short survey of the area of the hydrogen bonding where the noble and coinage metal gold enters its manifold of the proton acceptors. It is largely focused on the nonconventional hydrogen bonds that are formed in the complexes of the auride anion Au⁻ with HF, (HF)₂, H₂O, (H₂O)₂, NH₃, and (NH₃)₂, as mostly experimentally investigated to date. A thorough comparison of the experimental and computational data on these nonconventional hydrogen bonds is the main motif of the present work.     

Hydrogen bond CH…O in a methanolic solution of hydrogen chloride

The existence of a hydrogen bond in which a methyl group of the (MeOH)₂H⁺ ion acts as a proton donor is examined. The fundamental vibration frequencies of this ion were calculated for different numbers and strengths of CH…O bonds. The atomic charges in neutral ((MeOH) _n ,n=1–4) and protonated ((MeOH) _m H⁺,m=2–6) associates of methanol molecules were also calculated. The experimentally observed decrease in the v(CH) vibration frequencies of the (MeOH)₂H⁺ ion to 2890 cm⁻¹ and 2760 cm⁻¹ is attributable to the fact that each methyl group of the ion is involved in formation of two CH…O bonds with strength of −12.5 kJ mol⁻¹. The proton-donating ability of the CH bond depends on the charge on its H atom; however, it does not correlate with the dipole moment of this bond. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 306–312, February, 1999.     

Intramolecular S···O chalcogen bond in thioindirubin

Results of X-ray diffraction study and quantum-chemical calculations revealed that molecular conformation of thioindirubin molecule creates suitable conditions for formation of intramolecular C–H···O and S···O interactions. Analysis of molecular electrostatic potential (MEP) demonstrates existence of two areas of positive MEP (σ-holes) in the outermost part of the sulfur atom on the continuation of the lines of the C–S bonds. One of these σ-holes is oriented toward region of negative MEP around the oxygen atom of carbonyl group. Such situation corresponds to formation of σ-hole or chalcogen bond. Existence of both types of bonding interactions is confirmed by topological analysis of electron density distribution using “Atoms in Molecules” (AIM) theory. Energies of the C–H···O hydrogen bond and the S···O σ-hole bond derived from AIM and NBO theories are very close.     

Spectroscopic study of hydrogen bonding in the enol form of β-diketones—II. Symmetry of the hydrogen bond

The effects of proton potential on the i.r. and Raman spectra of β-diketones are discussed. The spectroscopic behaviour of the asymmetric hydrogen bond stretching mode and of the out-of-plane hydrogen bond bending modes indicates a relatively high barrier double minimum potential.From the observed O…O distances and these predicted from the spectroscopic results for intermolecular H-bonds, a bent hydrogen bond was concluded. The spectroscopic data show a great change in the internal modes of β-diketones upon deuteration. This was attributed to the lengthening of the O…O distance which is a known characteristic of a double minimum potential.     

With regard to the hydrogen bonding in complexes of pyridylureas, less is more. a role for shape complementarity and CH...O interactions?

A pyridylurea.tetraazaanthracenedione complex with three hydrogen bonds is more stable than an analogous complex with four hydrogen bonds. An X-ray analysis and modeling suggests a steric mismatch destabilizing the latter and a CH...O contact enhancing the stability of the former.     

Can an OH radical form a strong hydrogen bond? A theoretical comparison with H2O

In this study, we apply UCCSD/6-31++G** to investigate the ability of an OH radical acting as a hydrogen bond acceptor with HF, HCl, and H(2)O (HO...HX; X=F, Cl, OH) or as a hydrogen bond donor with H(2)O and H(2)S (OH...XH(2); X=O and S). We also replace OH with H(2)O and make a fair comparison between them. Additionally, the counterpoise method (CP) has been used to examine the effect of basis set superposition error (BSSE). Our results reveal that OH is a stronger hydrogen bond donor but a weaker hydrogen bond acceptor than H(2)O. This conclusion is independent of the correction for BSSE and can be rationalized by the NBO analysis, the results of which indicate that OH radical has a lower n(O) and sigma*(O-H) in energy than that of H(2)O.     

C–H⋯O hydrogen bond in chloroform–triformylmethane complex: Blue-shifted or red-shifted?

B3LYP/6-311+G** level of theory is used to investigate the C-H...O hydrogen bond formed by chloroform and two conformers of triformylmethane (TFM), i.e. cis-TFM (concerned with C1 configuration) and trans-TFM (concerned with C2 and C3 configurations). Polarized continuum model (PCM) is used to study the solvent (chloroform) effect on this hydrogen bond. The C3 configuration is more stable than the C1 configuration whether the absolute energy or the stabilization energy is concerned. For the C1 and C2 configurations this hydrogen bond is of blue-shifted type both in gas phase and in chloroform solution. For the C3 configuration this hydrogen bond is of red-shifted type in gas phase but turns into blue-shifted type in chloroform solution instead. It's inappropriate to simply designate this hydrogen bond as blue-shifted type or red-shifted type.     

Interaction of a C-F bond with the π-system of a C═C bond or "head on" with a proximate C-H bond

We describe the synthesis and preliminary study of two molecules, in which a fluorine atom is positioned proximately above the π-orbitals of a C═C bond or else wherein a C-F bond interacts in a "head on" fashion with a proximate C-H bond. The spectroscopic characteristics of these unusual interactions are documented, X-ray crystallographic analyses are reported, and theoretical calculations are employed to support the observed spectroscopy.     

A novel CC bond forming reaction of aryl-and alkenylsilanols. A halogen-free Mizoroki-Heck type reaction

When dimethyl(phenyl)silanol is subjected to on electron-deficient olefin in the presence of a stoichiometric amount of Pd(OAc)₂, substitution of the CH bond of the olefin by a phenyl group on the silanol occurs in 52–86% yields. The reactions of several aryl- and alkenylsilanols with several olefins are also found to proceed in the system of 10 mol% of Pd(OAc)₂, Cu(OAc)₂ (3 mol), LiOAc (2 mol) to give the corresponding products in up to 69% yield.     

Neutron diffraction study of the HF adducts containing a hydrogen bond F-H?O

Single-crystal structures of HF adducts of acid salts CsH₂PO₃·HF, KH₂PO₄·HF, and CsH₂PO₄·HF were determined by neutron diffraction using the Laue method. In the crystals, HF molecules are connected to anions by means of new type of hydrogen bonds, F-H?O, which are significantly shorter (F?O distances 2.356-2.386(3) Å) than strong O-H?O or O-H?F hydrogen bonds. The H-F distances in the structures of these adducts, 1.020-1.027(5) Å, are compared with those in crystalline HF and hydrofluoride anions.     

Is [N+-H...O] hydrogen bonding the most important noncovalent interaction in macrocycle-dibenzylammonium ion complexes?

We report a new host molecule in which one diethylene glycol chain (i.e., a loop possessing only three oxygen atoms) incorporated along with two phenolic aromatic rings is linked by a xylene spacer into a macroring. The design of the molecular structure of this macrocycle "amplifies" any potential [cation...pi], [N+-H...pi], and [N+C-H...pi] interactions between the dibenzylammonium (DBA+) ion and the phenolic rings of the macrocycle; as such, these species display a very strong binding affinity in CD3NO2 (Ka = 15,000 M(-1)). The macroring also coordinates to bipyridinium ions in a [2]pseudorotaxane fashion, which makes it the smallest macrocycle (i.e., a 25-membered ring) known to complex both DBA+ and bipyridinium ions in solution. To confirm unambiguously that these pseudorotaxanes exist in solution, we synthesized their corresponding interlocked molecules, namely rotaxanes and catenanes.