Photonic Boolean logic gates based on DNA aptamers

We designed a pair of DNA-based logic gates that sense single-stranded DNAs and aptamer ligands to produce fluorescence outputs according to Boolean logic functions AND and OR.     

Functional organogels from highly efficient organogelator based on perylene bisimide semiconductor

A new n-type semiconducting perylene bisimide dye has been synthesized that gelates a broad variety of organic solvents to afford well-defined nano- and mesoscopic helical fibers and bundles.     

Assembly of DNA triangles mediated by perylene bisimide caps

Perylene bisimides (PBI) have been synthetically incorporated as caps onto a Y-shaped DNA triple strand. These PBI caps serve as "sticky" ends in the spontaneous assembly of larger DNA ensembles, linking the triangular DNA through stacking interactions. This, in turn, yields a hypsochromic shift in the absorption and a red shift in the fluorescence as characteristic optical readouts. This assembly occurs spontaneously without any enzymatic ligation process and without the use of overhanging DNA as sticky ends. Instead, dimerizations of the PBI chromophores in the assembly are controlled by the DNA as a structural scaffold. Thereby, the PBI-driven assembly is fully reversible. Due to the fact that PBI dimerization does not occur in the single strand, the aggregates can be destroyed by thermal dehybridization of the DNA scaffold and reassembled by reannealing of the DNA construct. In view of the fact that PBI forms stable radical anions, the presented DNA architectures are not only interesting optical biomaterials, but are also promising materials for molecular electronics with DNA.     

Gelation of a highly fluorescent urea-functionalized perylene bisimide dye

[structure: see text] A urea-containing tetraphenoxy-substituted perylene bisimide has been synthesized, and its gelation ability has been studied. This functional dye forms fluorescent organogels in toluene and tetrachloromethane through self-assembly by hydrogen-bonding and pi-pi-stacking interactions. AFM and confocal laser scanning microscopy reveal the formation of fiberlike aggregates.     

Colorimetric logic gates based on aptamer-crosslinked hydrogels

We have developed a novel molecular logic gate system based on the incorporation of aptamer-crosslinked hydrogels. Modified gold nanoparticles are used as the output signal, which is visible to the naked eye. This system is designed for AND and OR operations using two chemicals as stimulus inputs.     

Molecular logic gates based on pentacyanoferrate complexes: from simple gates to three-dimensional logic systems

The article presents new aspects of reactivity of two pentacyanoferrates: [Fe(CN)5NO]2- and [Fe(CN)5N(O)SR]3-. The dependence of thermodynamic functions on cations was found for the reaction between nitroprusside and thiolate. The thermodynamic data are interpreted in terms of ion pairing and changes in the solvation shell of the cations. It was found that the reaction enthalpies and entropies depend strongly on the cation radius. The reaction volume in turn is strongly affected by the structure and properties of the hydration shell. Careful data analysis allowed the contribution of partial cation dehydration to the total reaction volume to be determined. The experimental results were also interpreted in terms of chemical logic gates. Complex logic systems were built from a number of cells containing a switching compound arranged in different geometric patterns. Increasing the dimensionality of these arrangements leads to really complex logic systems containing up to 20 AND and OR logic gates. The system is capable of processing up to 16 bits of input data.     

Ethynyl-linked perylene bisimide based electron acceptors for non-fullerene organic solar cells

Star-shaped electron acceptors based on perylene bisimide as end groups and spiro-aromatic core linked with ethynyl units were developed for nonfullerene solar cells. Ethynyl linkers are able to improve the planarity of conjugated backbone, resulting in enhanced electron mobility and power conversion efficiency in solar cells.     

Photophysical properties of a tetraphenoxy-substituted perylene bisimide derivative characterized by single-molecule spectroscopy.

We present a detailed study of the photophysical properties of a tetraphenoxy-substituted perylene bisimide derivative. The probe molecules were immobilized in a Shpol'skii matrix of hexadecane and investigated by single-molecule spectroscopy at cryogenic temperatures. By using single-molecule spectroscopic techniques we reveal the triplet substate kinetics and the fluorescence quantum yield, and we provide an estimate for the S1-S0 transition dipole moment.     

Molecular logic gates based on 2-tyrylquinoline derivatives

Various logical operations can be performed by molecular logic gates (MLG) based on 2-styrylquinoline derivatives using irradiation with light and protonation as input signals and absorbance (optical density) as output signal. The MLG operation type (“INH”, “OR”, “AND”) depends on the observation wavelength.     

New and efficient arrays for photoinduced charge separation based on perylene bisimide and corroles

The bichromophoric systems C2-PI, C3-PI, and C3-PPI consisting of corrole and perylene bisimide units and representing one of the rare cases of elaborate structures based on corrole, have been synthesized. Corroles C2 and C3 are, respectively, meso-substituted corroles with 2,6-dichlorophenyl and pentafluorophenyl substituents at the 5 and 15 positions. The three dyads were prepared by divergent strategy with the corrole-forming reaction as the last step of the sequence. C2-PI and C3-PI differ in the nature of the corroles, whereas C3-PI differs from C3-PPI in the presence of a further phenyl unit in the linker between photoactive units. The dyads display spectroscopic properties which are the superposition of the component spectra, indicating a very weak electronic coupling. Excitation of the corrole unit leads to charge separation with a rate which decreases from 2.4 x 10(10), to 5.0 x 10(9), and to 4.9 x 10(7) s(-1) for C2-PI, C3-PI, and C3-PPI, respectively, where the reaction is characterized by a delta G degrees >0. Excitation of the perylene bisimide unit is followed by competing reactions of: 1) energy transfer to the corrole unit, which subsequently deactivates to the charge-separated state and; 2) electron transfer to directly form the charge-separated state. The ratio of electron-to-energy-transfer rates is 9:1 and 1:1 for C3-PI and C3-PPI, respectively. The yield of charge separation is essentially 100 % for C2-PI and C3-PI, and approximately 50 % (excitation of peryleneimide) or 15 % (excitation of the corrole) for C3-PPI. The lifetime of the charge-separated state, observed for the first time in corrole-based structures, is 540 ps for C2-PI, 2.5 ns for C3-PI, and 24 ns for C3-PPI, respectively. This is in agreement with an inverted behavior, according to Marcus theory.     

Molecular assemblies of perylene bisimide dyes in water

Perylene bisimides are among the most valuable functional dyes and have numerous potential applications. As a result of their chemical robustness, photostability, and outstanding optical and electronic properties, these dyes have been applied as pigments, fluorescence sensors, and n‐semiconductors in organic electronics and photovoltaics. Moreover, the extended quadrupolar π system of this class of dyes has facilitated the construction of numerous supramolecular architectures with fascinating photophysical properties. However, the supramolecular approach to the formation of perylene bisimide aggregates has been restricted mostly to organic media. Pleasingly, considerable progress has been made in the last few years in developing water‐soluble perylene bisimides and their application in aqueous media. This Review provides an up‐to‐date overview on the self‐assembly of perylene bisimides through π–π interactions in aqueous media. Synthetic strategies for the preparation of water‐soluble perylene bisimides and the influence of water on the π–π stacking of perylene bisimides as well as the resulting applications are discussed.     

Multiple logic gates based on electrically wired surface-reconstituted enzymes

The electrode functionalized with glucose oxidase (GOx) and microperoxidase-11 (MP-11) performs various Boolean logic operations (OR, XOR, AND-OR) upon addition of glucose and/or H2O2 and application of different potentials. The output signal coming from the electrically wired enzymes is electrochemically readable, allowing interfacing of biochemical computing systems with ordinary electronics.     

Synthesis of highly fluorescent and water soluble perylene bisimide

Designed and synthesized a new highly water soluble N,N¹-bis（2-（（5-（（dimethylamino）methyl）furan-2-yl）methylthio）ethyl）-perylene -3,4,9,10-tetracarboxylic diimide from 2-（（5-（（dimethylamino）methyl）furan-2-yl）methylthio）ethanamine and perylene-3,4,9,10- tetracarboxylic dianhydride.The compound was characterized by ¹H,¹³C,2D NMR,mass and IR techniques.The compound is highly fluorescent with good solubility in water and other polar solvents.     

Preparation and electronic characteristics of anionic perylene bisimide films

Neutral perylene bisimides(PBI) are well-known n-type organic semiconductors, with number of challenging electronic properties in their neutral and reduced states. We report the characteristic electronic properties of PBI anionic films. We unexpectedly discovered that pristine PBI dianion film showed p-type character, while oxidized dianion film(dominant neutral state with few radical anions) showed normal n-type semiconductor character based on Seebeck effect measurements. Both kinds of films exhibit high electrical conductivity with a potential for thermoelectric applications. The mechanism of polarity reversal is proposed.     

Formation of supramolecular polymers and discrete dimers of perylene bisimide dyes based on melamine-cyanurates hydrogen-bonding interactions

Melamine-linked perylene bisimide dyes (MPBIs) bearing an ethylene or trimethylene group as linker moieties were synthesized, and their self-aggregation and coaggregation with cyanurates through complementary triple hydrogen bonds have been investigated. UV/vis studies revealed that both the MPBIs self-assemble in nonpolar organic solvent through pi-pi stacking interaction between perylene cores, giving self-aggregates with nearly identical thermal stabilities. Upon addition of 1 equiv of cyanurate components, however, the stabilities of the resulting aggregates were dramatically changed between the two systems, suggesting the formation of different types of hydrogen-bonded supramolecular species. Dynamic light scattering and atomic force microscopic studies revealed that the system featuring ethylene linker moieties generates a discrete dimer of MPBI supported by two cyanurate molecules, whereas the system featuring trimethylene linker moieties affords extended supramolecular polymers hierarchically organizing into nanoscopic fibers. These results demonstrate that it is possible to obtain distinct supramolecular species by just changing the number of carbon atoms at the linker moieties of MPBI components. The present strategy for the fabrication of discrete or polymeric supramolecular assemblies should be applicable to other functional pi-conjugated molecules.