Assessment and prediction of thermal transport at solid-self-assembled monolayer junctions

Self-assembled monolayers (SAMs) have recently garnered much interest due to their unique electrical, chemical, and thermal properties. Several studies have focused on thermal transport across solid-SAM junctions, demonstrating that interface conductance is largely insensitive to changes in SAM length. In the present study, we have investigated the vibrational spectra of alkanedithiol-based SAMs as a function of the number of methylene groups forming the molecular backbone via Hartree-Fock methods. In the case of Au-alkanedithiol junctions, it is found that despite the addition of nine new vibrational modes per added methylene group, only one of these modes falls below the maximum phonon frequency of Au. In addition, the alkanedithiol one-dimensional density of normal modes (modes per unit energy per unit length) is nearly constant regardless of chain length, explaining the observed insensitivity. Furthermore, we developed a diffusive transport model intended to predict interface conductance at solid-SAM junctions. It is shown that this predictive model is in an excellent agreement with prior experimental data available in the literature.     

Molecular transport junctions: asymmetry in inelastic tunneling processes

Inelastic electron tunneling spectroscopy (IETS) measurements are usually carried out in the low-voltage ("Ohmic", i.e., linear) regime where the elastic conduction/voltage characteristic is symmetric to voltage inversion. Inelastic features, normally observed in the second derivative d(2)I/dV(2) are also symmetric (in fact antisymmetric) in many cases, but asymmetry is sometimes observed. We show that such asymmetry can occur because of different energy dependences of the two contact self-energies. This may be attributed to differences in contact density of states (different contact material) or different energy dependence of the coupling (STM-like geometry or asymmetric positioning of molecular vibrational modes in the junction). The asymmetry scales with the difference between the energy dependence of these self-energies and disappears when this dependence is the same for the two contacts. Our nonequilibrium Green function approach goes beyond proposed WKB scattering theory in properly accounting for Pauli exclusion, as well as providing a path to generalizations, including consideration of phonon dynamics and higher-order perturbation theory.     

Studies of monolayer/substrate adhesion as function of the monolayer headgroup charge: DMPE and DMPA

The variation of the work of adhesion between lipid monolayers and a plane silicon oxide surface in a typical LB-configuration is measured as function of the subphase pH. The adhesion energy is deduced via fluorescence microscopy from the equilibrium meniscus height. With increasing pH the negative headgroup charge of both, dimyristoylphosphatidylethanolamine (DMPE) and dimyristoylphosphatidic acid (DMPA) monolayers increases. The increasing charge of DMPE is reflected in a measured decrease of the work of adhesion at higher pH. The DMPA/SiO₂ interaction is not affected by increasing headgroup charges. These results are qualitatively understood in terms of an electrostatic double layer interaction between charged surfaces. It predicts decreasing adhesion for increasing, but low surface charge densities (DMPE). whereas the adhesion is constant for high surface charge densities (DMPA).     

Labeling of Polymer Nanostructures for Medical Imaging: Importance of crosslinking extent, spacer length, and charge density

Radiolabeling studies were employed to investigate the influence of structure on the efficiency of surface functionalization for poly(acrylic acid)-coated shell crosslinked nanoparticles (SCKs) with two types of amine-terminated DOTA chelators. An intricate interplay between the chemical and physical properties of both the DOTA derivative and the SCK nanostructures was revealed, demonstrating the importance of structural control.     

Electrochemical electron transfer and its relation to charge transport in single molecule junctions

Ability to control charge transport at nanometer scale lies in the heart of design of fast reliable electronic devices. Molecular electronics thrive to use functional molecules for such transport. If the molecule contains redox center(s), a diode-like or transistor-like behavior can be easily explored by controlling not only the voltage difference between two metallic contacts of the molecular junction but also the potential of one of the contacting electrodes with respect to some reference. Thus, one needs to understand the relationship between electrochemical electron transfer and charge transport in metal–molecule–metal junctions. This review presents latest theoretical approaches toward understanding of such relationship and discusses pivotal experimental works to validate them. Tunneling and hopping pathways may operate in parallel (two-channel model), but experimental conditions dictate the channel preference.     

Sequence modulation of tunneling barrier and charge transport across histidine doped oligo-alanine molecular junctions

Series tunneling across peptides composed of various amino acids is one of the main charge transport mechanisms for realizing the function of protein. Histidine, more frequently found in redox active proteins, has been proved to be efficient tunneling mediator. While how it exactly modulates charge transport in a long peptide sequence remains poorly explored. In this work, we studied charge transport of a model peptide junction, where oligo-alanine peptide was doped by histidine at different position, and the series of peptides were self-assembled into a monolayer on gold electrode with soft EGaIn as top electrode to form molecular junction. It was found that histidine increased the overall conductance of the peptide, meanwhile, its position modulated the conductance as well. Quantitative analysis by transport model and ultraviolet photoelectron spectroscopy (UPS) indicated a sequence dependent energy landscape of the tunneling barrier of the junction. Density-functional theory (DFT) calculation on the electronic structure of histidine doped oligo-alanine peptides revealed localized highest occupied molecular orbital (HOMO) on imidazole group of the histidine, which decreased charge transport barrier.     

Models of charge transport and transfer in molecular switch tunnel junctions of bistable catenanes and rotaxanes

The processes by which charge transfer can occur play a foundational role in molecular electronics. Here we consider simplified models of the transfer processes that could be present in bistable molecular switch tunnel junction (MSTJ) devices during one complete cycle of the device from its low- to high- and back to low-conductance state. The bistable molecular switches, which are composed of a monolayer of either switchable catenanes or rotaxanes, exist in either a ground-state co-conformation or a metastable one in which the conduction properties of the two co-conformations, when measured at small biases (+0.1 V), are significantly different irrespective of whether transport is dominated by tunneling or hopping. The voltage-driven generation (±2 V) of molecule-based redox states, which are sufficiently long-lived to allow the relative mechanical movements necessary to switch between the two co-conformations, rely upon unequal charge transfer rates on to and/or off of the molecules. Surface-enhanced Raman spectroscopy has been used to image the ground state of the bistable rotaxane in MSTJ-like devices. Consideration of these models provide new ways of looking at molecular electronic devices that rely, not only on nanoscale charge-transport, but also upon the bustling world of molecular motion in mechanically interlocked bistable molecules.     

Molecular wiring of nanocrystals: NCS-enhanced cross-surface charge transfer in self-assembled Ru-complex monolayer on mesoscopic oxide films

We report on rapid ambipolar cross-surface charge transfer within self-assembled monolayers (SAM) of the heteroleptic Ru-complexes cis-RuLL'(NCS)(2) (L = 2,2'-bipyridyl-4,4'-dicarboxylic acid, L' = 4,4'-dinonyl-2,2'-bipyridyl) (1) and cis-RuLL' '(NCS)(2) (L = 2,2'-bipyridyl-4,4'-dicarboxylic acid, L' = 4,4'-dimethyl-2,2'-bipyridyl) (2) on the surface of mesoscopic insulating oxide films. The bipyridyl ligands of the Ru-complex transport electrons, while the NCS groups plays a pivotal role in mediating surface confined hole percolation. Molecular dynamics calculations show the NCS ligands of 1 and 2 to orient in a fashion that enhances the overlap of the HOMOs of neighboring ruthenium complexes. Using ab initio Hartree-Fock calculations the electronic coupling matrix element for intermolecular hole exchange at the surface is estimated to be 0.13 eV. Cyclic voltammetry as well as spectroelectrochemical and impedance measurements performed with a series of other Ru-complexes confirmed the control of the cross surface charge transfer by the molecular structure. Complex 2 shows the highest percolation rate, the surface hole diffusion coefficient being 1.1 x 10(-8) cm(2)/s. The effects of the ligand properties, such as denticity, geometry, and size, on the intermolecular charge transport are discussed in detail.     

Molecular dynamics study of polymeric chemical gels: Effect of persistence length and crosslinker density

Using molecular dynamics, we study the formation of chemical gels from an initial solution of reactive polymers that undergo a crosslinking reaction. We study the effect of the polymer persistence length and different densities of crosslinkers along the chains. As the reaction progresses, different structural features are identified in the system leading to the development of a percolated cluster. These features are (a) single strands, (b) double strands, and (c) bridges. We found that the total numbers of these three kinds of features are roughly independent of the persistence length; however, the average lengths of single and double strands grow with this variable. The average length of double strands strongly increases with increasing crosslinker density and the amount of single strands sharply falls as crosslinker density grows. We also found that general structural features of polymer networks are highly dependent on chain persistence length and crosslinker density. Fully flexible chains with high density of crosslinkers result in inhomogeneous network structures with large voids. In contrast, precursor chains with high rigidity and scarce number of crosslinkers result in homogeneous networks having small cavities. © 2019 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2019 , 57, 1343–1350     

Diblock polyampholytes grafted onto spherical particles: effect of stiffness, charge density, and grafting density

The structure of spherical brushes formed by symmetric diblock polyampholytes end-grafted onto small spherical particles in aqueous solution is examined within the framework of the so-called primitive model using Monte Carlo simulations. The properties of the two blocks are identical except for the sign of their charges. Three different chain flexibilities corresponding to flexible, semiflexible, and stiff blocks are considered at various polyampholyte linear charge densities and grafting densities. The link between the two blocks is flexible at all conditions, and the grafted segments are laterally mobile. Radial and lateral spatial distribution functions of different types and single-chain properties are analyzed. The brush structure strongly depends on the chain flexibility. With flexible chains, a disordered polyelectrolyte complex is formed at the surface of the particle, the complex becoming more compact at increasing linear charge density. With stiff blocks, the inner blocks are radially oriented. At low linear charged density, the outer blocks are orientationally disordered, whereas at increasing electrostatic interaction the two blocks of a polyampholyte are parallel and close to each other, leading to an ordered structure referred to as a polyampholyte star. As the grafting density is increased, the brush thickness responds differently for flexible and nonflexible chains, depending on a different balance between electrostatic interactions and excluded volume effects.     

Electrostatic potentials,fields and field gradients from a general crystalline charge density

Explicit expressions for the electrostatic potential, the electric field and the electric field gradient at the nuclear positions of a crystalline lattice are presented. They are derived for a charge density given as an expansion in terms of spherical harmonics around the nuclear sites and as a Fourier series in the interstitial. These expressions can be decomposed into contributions from the spherical region centered around the lattice site of interest, from spherical regions surrounding all the other lattice sites and a contribution from the interstitital region.     

Effect of chain length and charge density on the construction of polyelectrolyte multilayers on colloidal particles

Two combinations of sodium poly(4-styrene sulfonate) (PSS) and poly(allylamine hydrochloride) (PAH) of different chain length and charge density are employed to construct multilayer films. The polyelectrolytes are assembled layer-by-layer on colloidal particles in the absence of salt. We have investigated the formation and electrical characteristics of the films by using electric light scattering technique. The results show that the film thickness is independent of the chain length when fully charged PAH (at pH 4.6) is combined with fully charged PSS. When the films are prepared with less charged PAH (at pH 6.7) and fully charged PSS, lower thickness is found for the film with shorter polymer chains. In all cases, the thickness increment realized on addition of the polymer with lower molar concentration is partially lost on exposure to the solution with higher concentration of the oppositely charged partner. When the film growth is regular (at equal molar concentrations of the fully charged polyelectrolytes), the ratio of PSS to PAH charge, estimated from the electro-optical effect values, exceeds 1. The electro-optical effect is also higher for the films ending with PSS when fully charged PSS is combined with less charged PAH (at pH 6.7). This reveals the key role of the charge in the last-adsorbed layer for the electro-optical behavior of the whole film.     

The relationship between polymer/substrate charge density and charge overcompensation by adsorbed polyelectrolyte layers

This work examines polyelectrolyte adsorption (exclusively driven by electrostatic attractions) for a model system (DMAEMA, polydimethylaminoethyl methacrylate, adsorbing onto silica) where the adsorbing polycation is more densely charged than the substrate. Variations in the relative charge densities of the polymer and substrate are accomplished by pH, and the polycation is of sufficiently low molecular weight that the adsorbed conformation is generally flat under all conditions examined. We demonstrate, quantitatively, that the charge overcompensation observed on the isotherm plateau can be attributed to the denser positive charge on the adsorbing polycation and that the ultimate coverage obtained corresponds to the adsorption of one oligomer onto each original negative silica charge, when the silica charge is most sparse, at pH 6. This limiting behavior breaks down at higher pHs where the greater silica charge density accommodates single chains adsorbing onto multiple negative sites. As a result of the greater substrate charge density and reduced polycation charge at higher pHs, the extent of charge overcompensation diminishes while the coverage increases on the plateau of the isotherm. Ultimately at the highest pHs, a regime is approached where the coil's excluded surface area, not surface charge, limits the ultimate coverage. In addition to quantifying the crossover from the charge-limiting to the area-limiting behaviors, this paper quantitatively reports adsorption-induced changes in bound counterion density and ionization at the interface, which were generally found to be independent of coverage for this model system.     

Nanotube-metal junctions: 2- and 3-terminal electrical transport

We address the quality of electrical contact between carbon nanotubes and metallic electrodes by performing first-principles calculations for the electron transmission through ideal 2- and 3-terminal junctions, thus revealing the physical limit of tube-metal conduction. The structural model constructed involves surrounding the tube by the metal atoms of the electrode as in most experiments; we consider metallic (5,5) and n-doped semiconducting (10,0) tubes surrounded by Au or Pd. In the case of metallic tubes, the contact conductance is shown to approach the ideal 4e2/h in the limit of large contact area. For three-terminals, the division of flux among the different transmission channels depends strongly on the metal material. A Pd electrode has nearly perfect tube-electrode transmission and therefore turns off the straight transport along the tube. Our results are in good agreement with some recent experimental reports and clarify a fundamental discrepancy between theory and experiment.     

Charge transport in single Au / alkanedithiol / Au junctions: coordination geometries and conformational degrees of freedom

Recent STM molecular break-junction experiments have revealed multiple series of peaks in the conductance histograms of alkanedithiols. To resolve a current controversy, we present here an in-depth study of charge transport properties of Au|alkanedithiol|Au junctions. Conductance histograms extracted from our STM measurements unambiguously confirm features showing more than one set of junction configurations. On the basis of quantum chemistry calculations, we propose that certain combinations of different sulfur-gold couplings and trans/gauche conformations act as the driving agents. The present study may have implications for experimental methodology: whenever conductances of different junction conformations are not statistically independent, the conductance histogram technique can exhibit a single series only, even though a much larger abundance of microscopic realizations exists.     

Computer simulation studies of surfactant monolayer mixtures at the water/oil interface: charge distribution effects

Charge distribution effects on polar head groups for a mixture of amphiphilic molecules at the water/oil interface were studied. For this purpose a model which allowed us to investigate the charge effects exclusively was created. As a molecular model we used the structure of sodium dodecyl sulfate. Then we prepared molecules with the same molecular structure but with different charge distributions in order to have one cationic and one nonionic molecule. So, in this way, we were able to focus only in the charge effects. The monolayer mixtures were composed of anionic/nonionic and cationic/nonionic surfactants. Simulations of these systems show that the location of the different surfactants at the interface is determined by the interaction and the charge distribution of the molecules. Due to the difference in the charge distribution of the surfactant monolayers, the water molecules present distinct orientations in the mixture. Finally, it was found that the electrostatic potential difference across the interface depended on the interactions (charge distribution) of the anionic, cationic, and nonionic molecules in the mixture.     

Modeling the thermodynamic and transport properties of decahydronaphthalene/propane mixtures: Phase equilibria, density, and viscosity

The density and viscosity of propane mixed with 66/34 trans/cis-decahydronaphthalene were measured over a wide range of temperatures (323-423 K), pressures (2.5-208 bar), and compositions (0-65 mol% propane). For conditions giving two phases, the composition of the dense phase was measured in addition to the density and viscosity. The modified Sanchez-Lacombe Equation of State (MSLEOS) was used with a single linearly temperature-dependent pseudo-binary interaction parameter to correlate the phase compositions and densities. The compositions and densities of the mixtures were captured well with absolute average deviations between the model and the data of 5.3% and 2.3%, respectively. The mixture viscosities were computed from a free volume model (FVM) by using a single constant binary interaction parameter. Density predictions from the MSLEOS were used as input mixture density values required for the FVM. The FVM was found to correlate well with the mixture viscosity data with an absolute average deviation between the model and the data of 5.7%.     

Atomic radii scales and electron properties deduced from the charge density

A procedure to represent Hartree-Fock electron densities in atoms [L. Fernandez Pacios, J. Comp. Chem., 14 , 410 (1993)] defines ρ(r) as a reduced expansion of exponential functions. These analytically modeled densities (AMDs) are used in this article to develop a simple computational procedure for analyzing different atomic radii scales implemented in the commercial software system MATHEMATICA. The analysis is focused on the physical information associated to a given atomic radius as deduced from calculations depending on ρ(r). The amount of electron charge contained in the sphere of the given radius as well as the distinct contributions to the potential energy integrated up to that radius are obtained within the AMD formulation for main-group atoms H—Kr. The ASCII file needed to run the procedure within MATHEMATICA is also presented. © 1995 by John Wiley & Sons, Inc.