Motion of single long DNA molecules through arrays of magnetic columns

We present a videomicroscopy study of T4 DNA (169 kbp) in microfluidic arrays of posts formed by the self-assembly of magnetic beads. We observe DNA moving through an area of 10 000 microm(2), typically containing 100-600 posts. We determine the distribution of the contact times with the posts and the distribution of passage times across the field of view for hundreds of DNA per experiment. The contact time is well approximated by a Poisson process, scaling like the inverse of the field strength, independent of the density of the array. The distribution of passage times allows us to estimate the mean velocity and dispersivity of the DNA during its motion over distances long compared to our field of view. We compare these values with those computed from a lattice Monte Carlo model and geometration theory. We find reasonable quantitative agreement between the lattice Monte Carlo model and experiment, with the error increasing with increasing post density. The deviation between theory and experiment is attributed to the high mobility of DNA after disengaging from the posts, which leads to a difference between the contact time and the total time lost by colliding. Classical geometration theory furnishes surprisingly good agreement for the dispersivity, while geometration theory with a mean free path significantly overestimates the dispersivity.     

Surface friction of hydrogels with well-defined polyelectrolyte brushes

Hydrogels of poly(2-hydroxyethyl methacrylate) (PHEMA) with well-defined polyelectrolyte brushes of poly(sodium 4-styrenesulfonate) (PNaSS) of various molecular weights were synthesized, keeping the distance between the polymer brushes constant at ca. 20 nm. The effect of polyelectrolyte brush length on the sliding friction against a glass plate, an electrorepulsive solid substrate, was investigated in water in a velocity range of 7.5 x 10(-5) to 7.5 x 10(-2) m/s. It is found that the presence of polymer brush can dramatically reduce the friction when the polymer brushes are short. With an increase in the length of the polymer brush, this drag reduction effect only works at a low sliding velocity, and the gel with long polymer brushes even shows a higher friction than that of a normal network gel at a high sliding velocity. The strong polymer length and sliding velocity dependence indicate a dynamic mechanism of the polymer brush effect.     

Effect of surfactant on retention behaviors of polystyrene latex particles in sedimentation field-flow fractionation: effective boundary slip model approach

A retention theory in sedimentation field-flow fractionation (SdFFF) was developed by exploiting the effective slip boundary condition (BC) that allows a finite velocity for particles to have at the wall, thereby alleviating the limitations set by the no-slip BC constraint bound to the standard retention theory (SRT). This led to an expression for the retention ratio R as R = (R(o) + v*(b))/(R(o) + v*(b)), where R(o) is the sterically corrected SRT retention ratio and v*(b) is the reduced boundary velocity. Then, v*(b) was modeled as v*(b) = v*(b,o)/[1 + (7K*S(o))(1/2)], where S(o) is the surfactant (FL-70) concentration and K* is the distribution coefficient associated with the langmuirian isotherm of the apparent effective mass against S(o). We applied this to study the surfactant effect on the retention behaviors of polystyrene (PS) latex beads of 170-500 nm in diameter. As a result, an empirical relation was found to hold between v*(b,o) and d(o) (estimated from R(o) at S(o) = 0) as v*(b,o) - v*(o,o)[1 - (d(c)/d(o))], where v*(o,o) is the asymptotic value of v*(b,o) in the vanishing d(c)/d(o) limit and d(c) is the cutoff value at which v*(b,o) would vanish. According to the present approach, the no-slip BC (v*(b,o) = 0) was predicted to recover when d(o) ～ d(c), and the boundary slip effect could be significant for S(o) ≤ 0.05%, particularly for large latex beads.     

DFT-based pseudo-Jahn-Teller coupling studies on the steric and energetic lone pair effect of four- and five-coordinate halide molecules and complexes with central ions from the fifth, sixth, and seventh main groups

The energetical and stereochemical effect of the s(2) lone pair in the title molecules and complexes is investigated using a pseudo-Jahn-Teller coupling model with parameters adjusted to energies and wave functions from DFT calculations. Vibronic coupling parameters were calculated and compared with those of the coordination number (CN) 3. Inspecting the correlation between the chemical hardness and the vibronic coupling energy (hardness rule), it is found that the tendency to distort decreases with increasing CN. While all considered molecules AX(3) (A(III) = P to Bi; X(-) = F to I) undergo lone pair deformations (D(3h)---> C(3v)), only part of the AX(4)(-) and BX(4) species (B(IV) = S to Po) do so (T(d)---> C(2v)-and even less the ones with CN = 5 (D(3h)---> C(2v) (congruent with C(4v)), AX(5)(2-), BX(5)(-), and CF(5) (C(V); Cl to I). The distorted polyhedra of minimum energy possess usually the butterfly C(2v) shape (CN = 4, tau(2)(zeta) displacement path) and a C(2v) = C(4v)geometry (CN = 5, epsilon' (epsilon) distortion path). A further symmetry lowering to C(s) occurs, if the central ion becomes too small with respect to the ligands (ionic size influence, PCl(Br)(4)(-), PCl(5)(2-)), with the tendency to reduce the CN toward 3 + 1 and 4 + 1, respectively. For CN = 4 the various stationary points of, for example, compressed and elongated C(3v), C(4v), etc. in the multidimensional ground-state potential surface have been characterized. Though of higher energy than the absolute C(2v) minimum, they are shown to govern the dynamics and reactivity of the CN = 4 species to a large extent. To simulate the chemical environment (positively charged counterions, polar solvents), the DFT calculations were performed using the polarizable continuum model COSMO (conductor-like screening model). Though the electronic energy gain upon distortion is not significantly affected by the solvent, the total stabilization energy is distinctly enhanced, frequently leading to lone pair deformations of otherwise electronically stable species. All results obtained by the combined vibronic/DFT approach are well in accord with available experimental data.     

Separation of charged colloids by a combination of pulsating lateral electric fields and poiseuille flow in a 2D channel

Separation of colloidal particles of different sizes is becoming increasingly important due to rapid developments in the area of proteomics, genetic engineering, drug discovery, etc. In particular, there is a need to accomplish these separations on a microscale in 'lab-on-a-chip' devices. In this paper, we propose a new method for accomplishing separation of charged colloids of different sizes in a microchannel. This method involves a combination of pulses of lateral electric fields and Poiseuille flow in the axial direction. We develop a model for this separation technique and obtain closed form solutions for the mean velocity and the dispersion coefficient for a pulse of molecules introduced into the channel. These expressions are then utilized to determine the channel length and the separation time. For reasonable value of design constants, the proposed technique can separate molecules of different sizes that have diffusivities of 10(-10) and 0.5 x 10(-10) m2/s in 15.7 s in a 3.7 mm long channel. The length and the time increase to 5.45 cm and 231 s if the ratio of the diffusivities is reduced from 2 to 1.2, i.e., the latter diffusivity is increased to 0.835 x 10(-10) m2/s, while keeping all the other parameters the same. If the diffusivities are about 10(-9) m(2)/s, the length and the time for separation are 1 cm and 17.5 s for D1/D2=2, and 16 cm and 269 s for D1/D2=1.2.     

Diffusion constant in gel electrophoresis at high fields

We present new measurements of the diffusion constant D in standard (slab-gel) electrophoresis of DNA at fields up to 10 V/cm. Molecules investigated are bacteriophages: T4 of length 173 kbp and lambda of length 48.5 kbp cut by restriction enzyme HindIII. We show, that D increases with the molecule length for electric field E above 5 V/cm. The results are interpreted within the geometration model.     

Kinetics and mechanism of the cleavage of phthalic anhydride in glacial acetic acid solvent containing aniline

Apparent second-order rate constants (k(n)(app)) for the nucleophilic reaction of aniline (Ani) with phthalic anhydride (PAn) vary from 6.30 to 7.56 M(-1) s(-1) with the increase of temperature from 30 to 50 degrees C in pure glacial acetic acid (AcOH). However, the values of pseudo-first-order rate constants (k(s)) for the acetolysis of PAn in pure AcOH increase from 16.5 x 10(-4) to 10.7 x 10(-3) s(-1) with the increase of temperature from 30 to 50 degrees C. The values of k(n)(app) and k(s) vary from 5.84 to 7.56 M(-1) s(-1) and from 35.1 x 10(-4) to 12.4 x 10(-4) s(-1), respectively, with the increase of CH(3)CN content from 1% to 80% v/v in mixed AcOH solvents at 35 degrees C. The plot of k(s) versus CH(3)CN content shows a minimum (with 10(4) k(s) = 4.40 s(-1)) at 50% v/v CH(3)CN. Similarly, the variations of k(n)(app) and k(s) with the increasing content of tetrahydrofuran (THF) in mixed AcOH solvent reveal respective a maximum (with k(n)(app) = 17.5-15.6 M(-1) s(-1)) at 40-60% v/v THF and a minimum (with k(s) = approximately 0-1.2 x 10(-4) s (-1)) at 60-70% v/v THF. The respective values of DeltaH* and DeltaS* are 15.3 +/- 1.2 kcal mol(-1) and -20.1 +/- 3.8 cal K(-1) mol(-1) for k(s) and 1.1 +/- 0.5 kcal mol(-1) and -51.2 +/- 1.7 cal K(-1) mol(-1) for k(n)(app), while the values of k(n) (= k(n)(app)/f(b) with f(b) representing the fraction of free aniline base) are almost independent of temperature within the range 30-50 degrees C. A spectrophotometric approach has been described to determine f(b) in AcOH as well as mixed AcOH-CH(3)CN and AcOH-THF solvents. Thus, the observed data, obtained under different reaction conditions, have been explained quantitatively. An optimum reaction condition, within the domain of present reaction conditions, has been suggested for the maximum yield of the desired product, N-phenylphthalamic acid.     

Determinants of thermal conductivity and diffusivity in nanostructural semiconductors

The origin of size effects in the thermal conductivity and diffusivity of nanostructural semiconductors was investigated through the establishment of a unified nanothermodynamic model. The contributions of size-dependent heat capacity and cohesive energy as well as the interface scattering effects were considered during the modeling. The results indicate the following: (1) both the thermal conductivity and diffusivity decrease with decreasing nanocrystal sizes (x) of Si and Si/SiGe nanowires, Si thin films and Si/Ge(SiGe) superlattices, and GaAs/AlAs superlattices when x > 20 nm; (2) the heat transport in semiconductor nanocrystals is determined largely by the increase of the surface (interface)/volume ratio; (3) the interface scattering effect predominates in the reduction of thermal conductivity and diffusivity while the intrinsic size effects on average phonon velocity and phonon mean free path are also critical; (4) the quantum size effect plays a crucial role in the enhancement of the thermal conductivity with a decreasing x (<20 nm). These findings provide new insights into the fundamental understanding of high-performance nanostructural semiconductors toward application in optoelectronic and thermoelectric devices.     

Host-assisted intramolecular vibrational relaxation at low temperatures: OH in an argon cage

The vibrational relaxation of hydroxyl radicals in the A (2)Sigma(+) (v=1) state has been studied using the semiclassical perturbation treatment at cryogenic temperatures. The radical is considered to be trapped in a closest packed cage composed of the 12 nearest argon atoms and undergoes local translation and hindered rotation around the cage center. The primary relaxation pathway is towards local translation, followed by energy transfer to rotation through hindered-to-free rotational transitions. Free-to-free rotational transitions are found to be unimportant. All pathways are accompanied by the propagation of energy to argon phonon modes. The deexcitation probability of OH(v=1) is 1.3 x 10(-7) and the rate constant is 4.7 x 10(5) s(-1) between 4 and 10 K. The negligible temperature dependence is attributed to the presence of intermolecular attraction (>kT) in the guest-host encounter, which counteracts the T(2) dependence resulting from local translation. Calculated relaxation time scales are much shorter than those of homonuclear molecules, suggesting the importance of the hindered and free motions of OH and strong guest-host interactions.     

Orientation of DNA and the agarose gel matrix in pulsed electric fields

Transient electric birefringence has been used as an analytical tool to study the orientation of DNA in agarose gels, and to study the orientation of the matrix alone. The sign of the birefringence of DNA oriented in an agarose gel is negative, as observed in free solution, indicating that the DNA molecules orient parallel to the direction of the electric field. If the median pore diameter of the gel is larger than the contour length of the DNA molecule, the DNA effectively does not see the matrix and the birefringence relaxation time is the same as observed in free solution. However, if the median pore diameter of the gel is smaller than the contour length of the DNA, the DNA molecule becomes stretched as well as oriented. For DNA molecules of moderate size (less than or equal to 4 kb), stretching in the gel causes the birefringence relaxation times to increase to the values expected for fully stretched molecules. Complete stretching is not observed for larger DNA molecules. The orientation and stretching of DNA molecules in the gel matrix indicates that end-on migration, or reptation, is a likely mechanism for DNA electrophoresis in agarose gels. When the electric field is rapidly reversed in polarity, very little change in the orientation of the DNA is observed if the DNA molecules were completely stretched and had reached their equilibrium orientation before the field was reversed in direction. Hence completely stretched, oriented DNA molecules are able to reverse their direction of migration in the electric field with little or no loss of orientation. However, if the DNA molecules were not completely stretched or if the equilibrium orientation had not been reached, substantial disorientation of the DNA molecules is observed at field reversal. The forced rate of disorientation in the reversing field is faster than the field-free rate of disorientation. Complicated patterns of reorientation can be observed after field reversal, depending on the degree of orientation in the original field direction. The effect of pulsed electric fields on the orientation of the agarose gel matrix itself was also investigated.(ABSTRACT TRUNCATED AT 400 WORDS)     

Quantitative analysis and synthesis of the electrokinetic mass transport and adsorption mechanisms of a charged adsorbate in capillary electrochromatography systems employing charged adsorbent particles.

The dynamic mathematical model of Grimes and Liapis [J. Colloid Interf. Sci. 234 (2001) 223] for capillary electrochromatography (CEC) systems operated under frontal chromatography conditions is extended to accommodate conditions in CEC systems where a positively charged analyte is introduced into a packed capillary column by a pulse injection (analytical mode of operation) in order to determine quantitatively the electroosmotic velocity, electrostatic potential and concentration profiles of the charged species in the double layer and in the electroneutral core region of the fluid in the interstitial channels for bulk flow in the packed chromatographic column as the adsorbate adsorbs onto the negatively charged fixed sites on the surface of the non-porous particles packed in the chromatographic column. Furthermore, certain key parameters are identified for both the frontal and analytical operational modes that characterize the performance of CEC systems. The results obtained from model simulations for CEC systems employing the analytical mode of operation indicate that: (a) for a given mobile liquid phase, the charged particles should have the smallest diameter, d(p), possible that still provides conditions for a plug-flow electroosmotic velocity field in the interstitial channels for bulk flow and a large negative surface charge density, deltao, in order to prevent overloading conditions; (b) sharp, highly resolute adsorption zones can be obtained when the value of the parameter gamma2min, which represents the ratio of the electroosmotic velocity of the mobile liquid phase under unretained conditions to the electrophoretic velocity of the anions (0>gamma2.min>-1), is very close to negative one, but the rate at which the solute band propagates through the column is slow; furthermore, as the solute band propagates across larger axial lengths, the desorption zone becomes more dispersed relative to the adsorption zone especially when the value of the parameter gamma2,max, which represents the ratio of the electroosmotic velocity of the mobile liquid phase under retained conditions to the electrophoretic velocity of the anions (0>gamma2,max>-1), is significantly greater than gamma2,min; (c) when the value of the equilibrium adsorption constant, K(A),3, is low, very sharp, highly resolved adsorption and desorption zones of the solute band can be obtained as well as fast rates of propagation of the solute band through the column; (d) sharp adsorption zones and fast propagation of the solute band can be obtained if the value of the mobility, v3, of the analyte is high and the value of the ratio v1/v3, where v1 represents the mobility of the cation, is low; however, if the magnitude of the mobility, v3, of the analyte is small, dispersed desorption zones are obtained with slower rates of propagation of the solute band through the column; (e) good separation of analyte molecules having similar mobilities and different adsorption affinities can be obtained in short operational times with a very small column length, L, and the resolution can be increased by providing values of gamma2,min and gamma2,max that are very close to negative one; and (f) the change in the magnitude of the axial current density, i(x), across the solute band could serve as a measurement for the rate of propagation of the solute band.     

STRUCTURE OF 1-CHLOROMETHYL-2,8,9-TRIOXA-5-AZA-3,4-BENZO-7,10- DIMETHYL-l-SILATRICYCLO-(3,3.3.O~(1,5))-UNDECANE

<正> Mr=299.8, triclinic, Pl, a=10.395(2), b=11.191(2), c=14.051(3)A, α=81.80(2), β=89.42(2), r=66.47(1)°, v=1481.4(5)A3, Z=4, μ(MoKα)=3.37 cm-1, F(000)=632, Dx=1.34 g/cm3, room temperature. The final R=0.058, with unit weights and s=1.33 for 2900 independent reflexions with |Fo| ≥2.5σ(|Fo|). There are two molecules in an asymmetric unit and the lengths of dative N→ Si bond for the two molecules are 2.185(4) and 2.177(4)A, respectively. The different conformations were observed due to the rotation of the chloro-methyl groups.     

Very large breathing effect in the first nanoporous chromium(III)-based solids: MIL-53 or Cr(III)(OH) x [O(2)C-C(6)H(4)-CO(2)] x [HO(2)C-C(6)H(4)-CO(2)H](x) x H(2)O(y)

The first three-dimensional chromium(III) dicarboxylate, MIL-53as or Cr(III)(OH) x [O(2)C-C(6)H(4)-CO(2)].[HO(2)C-C(6)H(4)-CO(2)H](0.75), has been obtained under hydrothermal conditions (as: as-synthesized). The free acid can be removed by calcination giving the resulting solid, MIL-53ht or Cr(III)(OH) x [O(2)C-C(6)H(4)-CO(2)]. At room temperature, MIL-53ht adsorbs atmospheric water immediately to give Cr(III)(OH) x [O(2)C-C(6)H(4)-CO(2)] x H(2)O or MIL-53lt (lt: low-temperature form, ht: high-temperature form). Both structures, which have been determined by using X-ray powder diffraction data, are built up from chains of chromium(III) octahedra linked through terephthalate dianions. This creates a three-dimensional structure with an array of one-dimensional large pore channels filled with free disordered terephthalic molecules (MIL-53as) or water molecules (MIL-53lt); when the free molecules are removed, this leads to a nanoporous solid (MIL-53ht) with a Langmuir surface area over 1500 m(2)/g. The transition between the hydrated form (MIL-53lt) and the anhydrous solid (MIL-53ht) is fully reversible and followed by a very high breathing effect (more than 5 A), the pores being clipped in the presence of water molecules (MIL-53lt) and reopened when the channels are empty (MIL-53ht). The thermal behavior of the two solids has been investigated using TGA and X-ray thermodiffractometry. The sorption properties of MIL-53lt have also been studied using several organic solvents. Finally, magnetism measurements performed on MIL-53as and MIL-53lt revealed that these two phases are antiferromagnetic with Néel temperatures T(N) of 65 and 55 K, respectively. Crystal data for MIL-53as is as follows: orthorhombic space group Pnam with a = 17.340(1) A, b = 12.178(1) A, c = 6.822(1) A, and Z = 4. Crystal data for MIL-53ht is as follows: orthorhombic space group Imcm with a = 16.733(1) A, b = 13.038(1) A, c = 6.812(1) A, and Z = 4. Crystal data for MIL-53lt is as follows: monoclinic space group C2/c with a = 19.685(4) A, b = 7.849(1) A, c = 6.782(1) A, beta = 104.90(1) degrees, and Z = 4.     

Light-harvesting heptadecameric porphyrin assemblies

New porphyrin assemblies containing 17 porphyrin molecules are constructed by using free base TPP-type porphyrins having eight pyrazine moieties 1. Spectroscopic titration of dimeric [meso-tetrakis(2-carboxy-4-nonylphenyl)porphyrinato]zinc(II) 2 with these porphyrins shows that the processes of the formation of the heptadecameric porphyrin assemblies may be analyzed as eight independent equilibrium processes with an identical binding constant. All binding constants are larger than 5 x 107 M-1 which is the determinable upper limit of the present titration method. In all cases, the fluorescence spectrum of the 1:8 mixture of 1 and 2 consists of the major fluorescence of 1 and the minor one of 2.pyrazine complex even in the presence of the large excess of the antenna pigments. The observed spectra are well reconstructed by the form of faF1 + fbF2, where F1 and F2 are the fluorescence of 1 and the 2.pyrazine complex measured separately at the corresponding concentrations. Interestingly, the general trend that values of fa are nearly equal to those of r564 x (1 - fb) in all cases is found, where r564 is the absorption ratios of the 2.pyrazine moiety and the central free base porphyrin in the assemblies at 564 nm. The observation indicates the excitation of the central porphyrin is directly enhanced by the absorption of the antenna pigments even in such large scale assemblies. Thus, the antenna effect for 1 having largest r564 results in 77 times fluorescence enhancement of the central free base porphyrin. The systems also show interesting dependency of energy-transfer efficiencies on the topological arrangement of the antenna elements.     

Product rotational angular momentum polarization in the H+FCl(v=0-5, j=0, 3, 6, 9)→HF+Cl reaction

The product alignment and orientation of the title reaction on the ground potential energy surface of 1 (2)A' have been studied using the quasi-classical trajectory method. The calculations were carried out for case (a) at collision energies of 0.5-20 kcal mol(-1) with the initially rovibrational state of the reagent FCl molecule being at the v = 0 and j = 0 level to especially reveal in detail the dependence of the product integral cross section on collision energy. Further calculations at the collision energy of 15 kcal mol(-1) for case (b) at v = 0-5, and j = 0, and (c) at v = 0, and j = 3, 6, 9 initial states were carried out to reveal the effect of initially vibrational and rotational excitations on stereodynamics, respectively. Possessing final relative velocity k' (defined as a vector in the xz-plane), product alignment perpendicular to the reagent relative velocity vector k (defined as z- or parallel to the z-axis), for case (a) is found to be weaker at all collision energies, for case (b) is found to be vibrationally enhanced by the reactant molecule FCl, but for case (c), rather insensitive to initially rotational excitation. The rotational vector of product molecular orientation pointing to either negative or positive direction of the y-axis in the center of mass frame, e.g. origin of the coordinate system, is enhanced by collision energies regarding to 0.5-20 kcal mol(-1), while it becomes weaker at higher vibrational (v = 0-5) or rotational (j = 0, 3, 6, 9) excitation levels. Effects of collision energies and of rotational excitation at these collision energies, with 15 kcal mol(-1) as an example on the calculated PDDCSs are also shown and discussed. Detailed plots P(φ(r)) in the range of 0 ≤φ(r)≤ 360(o), and P(θ(r), φ(r)) in the ranges of 0 ≤θ(r)≤ 180° and 0 ≤φ(r)≤ 360° at collision energies 0.5-20 kcal mol(-1) have been presented. Overall, results of PDDCSs of the product alignment and product orientation at these collision energies in the title reaction are not very strongly distinguishable.     

Diffusion in glassy polymers: A model using a homogenization method and the effective medium theory

Glassy polymers are considered as inhomogeneous with regions in which the gas sorption follows Henry's law and others where it follows Langmuir's law. It is assumed that the linear dimensions of these regions are small compared with the macroscopic length of interest but large compared with the mean free path of the penetrant gas molecules. Applying an homogenization method it is shown that the average flux is directly proportional to the concentration gradient in the polymer. This relationship can be expressed in terms of an effective diffusion coefficient D_eff, which depends on the details of the microstructure. D_eff is evaluated in the framework of the effective medium theory and compared with experimental data for diffusion of five vapors in ethylcellulose.     

Measuring acetylene concentrations using a frequency chirped continuous wave diode laser operating in the near infrared

Two frequency chirped continuous wave diode lasers operating in the near infrared (IR) at wavelengths of lambda approximately 1.535 microm and lambda approximately 1.520 microm have been used to measure acetylene concentrations using the P(17) and R(9) rotational lines of the (nu1 + nu3) vibrational combination band. The diode lasers were frequency chirped by applying an electrical current pulse to the laser driver at a repetition rate of greater than 1 kHz. As the laser is operated at high repetition rates, more than 1000 spectra per second can, in principle, be acquired and summed, allowing fast accumulation of data, rapid averaging and consequent improvement of the signal to noise ratio and detection limit. Experiments were performed using a single-pass cell with a path length of 16.4 cm, and also an astigmatic multi-pass absorption cell aligned to give a path length of 56 m. Detection limits corresponding to minimum detectable absorption coefficients, alpha(min), of 5.6 x 10(-5) and 7.8 x 10(-8) cm(-1), respectively, were obtained over a 4 s detection bandwidth. These detection limits would correspond to mixing ratios of 21 parts per million by volume (ppmv) and 59 parts per billion by volume (ppbv) of acetylene at 1 atm in air, with the deleterious effects of pressure broadening accounted for. The single-pass cell was used to perform breakthrough volume (BTV) experiments for the low volume adsorbent traps used to pre-concentrate organic compounds in air, taking advantage of the capability of the system to measure concentrations in real time.     

Molecular structure and conformation of chloronitromethane as determined by gas-phase electron diffraction and theoretical calculations

The molecular structure of chloronitromethane was studied in the gas phase at a nozzle-tip temperature of 373 K. The experimental data were interpreted using a dynamic model where the molecules are undergoing torsional motion governed by a potential function: V = V2/2x(1 - cos 2tau) + V4/2x(1 - cos 4tau) with V2 = 0.81(30) and V4 = 0.12(40) kcal/mol (tau is the dihedral angle between the C-Cl and N-O bond). The conformer with a zero degree dihedral angle is the most stable conformer. Comparison with results from HF/MP2/B3LYP 6-311G(d,p) calculations were made. The important geometrical parameter values (for the eclipsed form) obtained from least-squares refinements are the following: r(C-H) = 1.061(18)A, r(C-N) = 1.509 (5)A, r(N-O) = 1.223(1)A, r(C-Cl) = 1.742(2)A, angleClCN = 115.2(7) degrees, angleO4NC = 118.9(10) degrees, angleO5NC = 114.9(16) degrees, and angleClCH 115(4) degrees.     

Induction of strand breaks by low-energy electrons (8-68 eV) in a self-assembled monolayer of oligonucleotides: effective cross sections and attenuation lengths

Self-assembled monolayers of 5'-32P-labeled 3'-thiolated oligonucleotides chemisorbed on gold were bombarded by low-energy electrons (LEE) of 8-68 eV. Shorter 5'-32P-oligonucleotides produced by LEE-induced strand breaks were separated with denaturing polyacrylamide gel electrophoresis and quantified by phosphor imaging. The yields of short oligonucleotides (y) decrease exponentially with their length (n), following the equation y=ae-bn, where a and b are constants, which are related to the average effective cross section per nucleotide for DNA strand break (sigmaeff) and the attenuation length (AL=1b) of LEE, respectively. The AL decreases with LEE energies from 2.5+/-0.6 nm at 8 eV to 0.8+/-0.1 nm at 68 eV, whereas sigmaeff increases from (3+/-1)x10(-18) to (5.1+/-1.6)x10(-17) cm2 within the same energy range. The energy dependence of sigmaeff shows a resonance peak of (2.8+/-0.9)x10(-17) cm2 at 18 eV superimposed on a monotonically rising curve. Transient electron attachment to a sigma* anion state of the deoxyribose group, followed by dipolar dissociation into H- and the corresponding positive-ion radical, leading to C-O bond cleavage, is proposed to account for this maximum.     

Structure factors in granular experiments with homogeneous fluidization

Velocity and density structure factors are measured over a hydrodynamic range of scales in a horizontal quasi-2D fluidized granular experiment, with packing fractions φ ∈ [10%, 40%]. The fluidization is realized by vertically vibrating a rough plate, on top of which particles perform a Brownian-like horizontal motion in addition to inelastic collisions. On one hand, the density structure factor is equal to that of elastic hard spheres, except in the limit of large length-scales, as it occurs in the presence of an effective interaction. On the other hand, the velocity field shows a more complex structure which is a genuine expression of a non-equilibrium steady state and which can be compared to a recent fluctuating hydrodynamic theory with non-equilibrium noise. The temporal decay of velocity modes autocorrelations is compatible with linear hydrodynamic equations with rates dictated by viscous momentum diffusion, corrected by a typical interaction time with the thermostat. Equal-time velocity structure factors display a peculiar shape with a plateau at large length-scales and another one at small scales, marking two different temperatures: the "bath" temperature T(b), depending on shaking parameters, and the "granular" temperature T(g) < T(b), which is affected by collisions. The two ranges of scales are separated by a correlation length which grows with φ, after proper rescaling with the mean free path.