X-ray structure and NMR assignment of 4-methoxy-4′-methylthio-3,3′-diquinolinyl sulfidea

The title compound (C₂₀H₁₆N₂OS₂) is monoclinic, witha=7.786(3).,b=13.252(3),c=17.162(4) Å, =99.16(3)° and space groupP2₁/n. Two quinoline moieties are nearly perpendicular to each other (112.9(2)°). Both methoxy and methylthio groups are trans-orientated with the respect to the C(3)–S(1)–C(13) plane. Two pairs of the heteroatoms in ortho-positions are in very close contact. The conformation of the molecule explains an unusual¹H NMR spectrum     

X-ray structure and NMR assignment of 3,3′-dimethylthio-4,4′-diquinolinyl sulfide

The title compound (C₂₀H₁₆N₂S₃) is triclinic, witha=9.494(3)b=9.890(3),c=19.456(5)Å,a=90.26(3)°,°=100.47(3)°, =99.18(3)°,Z=4 and space groupP¯1. The structure was solved by direct methods and refined toR=0.045 for 6076 reflections. There are two nonequivalent molecules in the unit cell. Two pairs of sulfur atoms in ortho-positions remain in very close contact. The S-methyl groups are nearly coplanar to the quinoline moieties and turned to the orthoposition, 2. CP MAS spectrum shows two conformers in the solid state but¹H and¹³C NMR spectra in CDCl₃ solution show rapid equilibrium of the conformers giving rise to average NMR data.Part XX in the series of Azinyl Sulfides.     

X-ray structure of 4-chloro-3′-methylthio-3,4′-diquinolinyl sulfide

The title compound crystallizes in a monoclinic space groupP2₁/n witha=9.524(3),b=6.782(2),c=26.217(6) Å, =92.52(4)°. The values of the Cl...S and S...S distances are well below the sum of the van der Waals radii of the heteroatoms. Also, the Cl–C–C(S) and (Cl)C–C–S bond angles are below the standard 120°. This indicates a attractive interaction between both pairs ofortho-situated heteroatoms.Part XXXVIII in the Series of Azinyl Sulfides.     

Crystal structure of 1,4-dihydro-1-methyl-3′-methylsulfinyl-4-oxo-6-nitro-3,4′-diquinolinyl sulfide complex with DMF

The title compound crystallized as a complex with N,N-dimethylformamide (DMF) in a monoclinic space group P2 ₁ /c with a = 9.469(2), b = 25.168(5), c = 9.860(3) Å, and = 97.48(3)°. The two quinoline moieties are nearly perpendicular. The sulfoxide oxygen is pointed toward the H-2 proton. The S-methyl group is perpendicular to the parent pyridine ring plane.     

X-ray structure of 3′,4-dimethylthio-3,4′-diquinolinyl sulfide

The title compound (C₂₀H₁₆N₂S₃) is monoclinic, witha=31.550(9),b=8.504(3),c=14.745(3) Å,=114.14(3)°,Z=8 and space groupC2/c. The structure was solved by direct methods and refined toR=0.038 for 3012 reflections. The molecule exists in an uncommon conformation. Two quinoline moieties are nearly perpendicular to each other (80.9(3)°). Both methylthio groups have different orientation (the 4-SCH₃ group is nearly perpendicular and the 3-SCH₃ is nearly coplanar to the quinoline moieties). Two pairs of sulfur atoms in ortho-positions remain in very close contact. The conformation of the molecule explains an unusual¹H NMR spectrum.Part XVI in the series of Azinyl Sulfides.     

X-ray structure of 3,3′-bis(4-methylthioquinolinyl) sulfide

The structure of the title compound has been solved by direct methods, and refined to anR value of 0.035 for 1613 reflections. Both methyl carbon atoms deviate from the plane of the pyridine ring by 1.505(3) Å in opposite directions. Both sulfur atoms S(1) and S(2) remain in short contact, at 3.247(1) Å. The two pyridine rings are inclined at 61.4(2)° to each other.Part XIV in the series of Azinyl Sulfides.     

The structure of the π-molecular complex between 1,4-dihydro-9,10-anthrahydroquinone and 1,4-dihydro-9,10-anthraquinone

The structure of the π-molecular complex (10) was assigned on the basis of the solid state¹³C-nmr spectrum. The solid state¹³C-nmr spectrum of quinhydrone (12) has also been determined. Accurate¹H and¹³C chemical shift assignments have been made for the compounds3,5,6,7,8, and10 on the basis of HMQC and HMBC spectral data. The π-molecular complex10 crystallizes in the space groupP2₁ In with cell parameters:a=4.052 (1) Å,b=6.477 (1) Å,c=19.093 (2) Å, β=90.17 (1)^o,z=1,D _c =1.400 g mc^?32. Crystal and molecular structure of the title compound, C₂₈H₂₂O₄, has been determined by an X-ray analysis of10 by direct methods from diffractometer data and refined by full-matrix least-squares     

Crystal and molecular structures of 1,4-dihydro-6-methyl-5-N,N-diethylcarbamoyl-4-phenyl-2(3H)-pyrimidinethione (1) and 1,4-dihydro-6-methyl-5-N-methyl carbamoyl-4-(2′-nitrophenyl)-2(3H)-pyrimidinethione hemihydrate (2)

The crystal structure of 1,4-dihydro-6-methyl-5-N,N-diethylcarbamoyl-4-phenyl-2(3H)-pyrimidinethione, C₁₆ H ₂₁ N ₃OS (1), is monoclinic, space group P2₁/n, a = 6.818(1), b = 13.211(2), c = 18.807(3) Å, = 99.53(1)°, V = 1670.6(4) ų, Z = 4 and d _cal = 1.206 Mg/m³, R = 0.042 (wR = 0.119) for 190 parameters and 2560 observations with I 2(I) and 1,4-dihydro-6-methyl-5-N-methyl carbamoyl-4-(2-nitrophenyl)-2(3H)-pyrimidinethione hemihydrate, C₁₃ H ₁₄N₄O₃S 0.5H₂O, (2), is triclinic, space group P1, a = 7.513(1), b = 14.381(2), c = 15.506(2)Å, = 114.95(2), = 98.11(1), = 93.55(1)°, V = 1490.0(3) ų, Z = 4 and d _cal = 1.406 Mg/m³, R = 0.062 (wR = 0.165) for 388 parameters and 3094 observations with I 2(I).The compound 2 crystallized having two molecules in the asymmetric unit, which can be regarded as monohydrated dimers, and forming a hydrate. The conformation of the central heterocyclic ring (1,4-dihydropyrimidine) in both compounds was found to be close to a half-chair conformation. The 2-nitrophenyl substituent in 2 is in the axial synperiplanar orientation. In both compounds, the conformation of the 3-substituted carbamoyl group appears to be influenced by hydrogen bonding with anticlinal orientation observed for carbonyl groups serving as hydrogen bonding acceptors.     

Synthesis and X-ray structure of 5′-methoxy-2,4,6-trimethyl-2′-nitrosobiphenyl

The synthesis and X-ray crystal structure of 5-methoxy-2,4,6-trimethyl-2-nitrosobiphenyl is reported. The compound (C₁₆H₁₇NO₂) is monoclinic, with a = 11.080(4), b = 16.899(6), c = 15.410(5) Å, = 108.329(5)°, and space group P2₁/n. There are two independent molecules within the crystal. In each of these molecules the two phenyl rings are mutually orthogonal, with interplanar dihedral angles of 85.09 and 89.43° respectively. The nitroso substituents are essentially coplanar with the phenyl ring, with torsional angles of only 3.5 and 2.2°, respectively, while the methoxy groups make angles of 5.2 and 10.0°, respectively, with the phenyl ring.     

Crystal structure of 2,5-cyclohexadien-4-one-spiro-3′-(2′-methylthio-5′,5′-dimethyl-1′-pyrroline)

The crystal structure of the pyrrole derivative 2,5-cyclohexadien-4-one-spiro-3′-(2′-methylthio-5′,5′-dimethyl-1′-pyrroline) is determined by X-ray diffraction. Two independent molecules have similar structures and close geometric parameters but differ in configuration of the pyrrole ring and orientation of the thiomethyl group with respect to the pyrrole ring.     

A structural investigation of ethyl 3′-methyl-6-methoxy-5′-oxo-1,2-cyclopent-3′-enonaphthalene-4′-acetate,C19H18O4

The crystal and molecular structure of the title compound has been determined from X-ray diffraction data using radiation. The compound crystallizes in the triclinic space group witha=8.351(1),b=9.348(2),c=10.736(2) Å,=91.19(2),=90.07(2), =110.18(1)°, andZ=2. The structure was solved by direct methods and a full-matrix least-squares refinement converged to a finalR=0.057 for 2522 unique reflections with I3(I). The cyclopentenonaphthalene ring system is planar (mean deviation, 0.028 Å). The molecules are held together by van der Waals forces. Averaged C-O bond lengths are: C(sp²)-O=1.357(18); C(sp³)-O=1.448(12); and C=O=1.210(14) Å.     

X-ray crystal and molecular structure of 2,3-dideoxy-4-thio-d-arabino-heptonic acid 1,4-lactone: a key intermediate for syntheses of 2′, 3′-dideoxy-4′-thio-l-nucleosides

The structure of 2,3-dideoxy-4-thio-d-arabino-heptonic acid 1,4-lactone has been determined by X-ray diffraction. Crystals of the compound are orthorhombic, space groupP2₁2₁2₁, with cell dimensionsa=11.555(5),b=10.451(5),c=9.604(5) Å, andZ=4. The diffraction experiment has allowed to assign the absolute configuration (4R, 5R, 6R) to the chiral centers of the molecule.     

Chemical preparation and crystal structure of 6′-butoxy-2,6-diamino-3,3′azo-dipyridine monohydrate

Chemical preparation, X-ray single crystal, and calorimetric studies of C₁₄H₁₈N₆O·H₂O are described. The compound crystallizes in the triclinic space group, P with unit cell dimensions: a = 6.2640(3), b = 10.9840(4), c = 12.2220(3) Å, = 105.03(2), = 96.96(2), = 101.6(2)°, V = 712.10(5) ų, and Z = 2. The 6-butoxy-2,6-diamino-3,3-azo-dipyridine monohydrate structure is built up from organic layers parallel to the (120) plane linked via O—H···N bond.     

Crystal and molecular structure of 4′-hexyloxyphenyl 4-pentylbenzoate

The molecular and crystal structure of 4??-hexyloxyphenyl 4-pentylbenzoate, C₆H₁₃O-C₆H₄-COO-C₆H₄-C₅H₁₁, which is a liquid-crystal compound, was determined by X-ray diffraction. This compound forms a nematic phase upon melting. The crystal contains three crystallographically independent molecules. In one of them, the alkyl chain is disordered. This is indicative of the looseness of the crystal packing in the aliphatic region. The crystal structure is stabilized by the following two types of weak directional interactions: hydrogen bonds with the participation of the terminal O atom of the ester group and the C-H group of one of the benzene rings and C-H????-system interactions. Only one of the three independent molecules is involved in the latter type of interactions. Hence, the structurization of the mesophase is most likely determined by hydrogen bonding.     

Synthesis and crystal structure of N-(1-phenyl-3-methyl-4-benzal-pyrazolone-5)- N′-salicylidene hydrazine

A novel Schiff base compound, N-(1-phenyl-3-methyl-4-benzal-pyrazolone-5)-salicylidene hydrazine (PMBP-SAH), has been synthesized and characterized by X-ray diffraction: monoclinic, space group C2/c with a = 21.796(5) Å, b = 18.370(3) Å, c = 20.843(3) Å, = 95.440(10)°, V = 8308(3) ų, and Z = 16. The title compound contains two kinds of tautomers: the red compound is the keto form and the other is the enol form. Changes in color are due to the isomerization of the enol and keto forms by the intramolecular proton transfer.     

Crystal and molecular structure of 1,4-S,S′-bis-isothiosemicarbazidebutane dihydrobromide

The synthesis and crystal structure of 1,4-S,S-isothiosemicarbazidebutane dihydrobromide have been presented. The crystals are monoclinic:P2₁/n, a=7.9910(10),b=10.979(2),c=8.9240(10)Å, =111.450(10)°,Z=2, room temp. The structure was solved by direct methods. and refined to R=0.0297 for 846 reflections. The title compound consists of the centrosymmetric [C₆H₁₈N₆S₂]²⁺ dication and two Br^– anions. Intramolecular N–H...N and intermolecular N–H...Br hydrogen bonds stabilizetrans conformation of the thiosemicarbazide moiety.     

X-ray crystal structure of 2-hydroxy-2′-(1,4-bisoxo-6-hexanol)-1,1′-biphenyl

The X-ray crystal structure of 2-hydroxy-2-(1,4-bisoxo-6-hexanol)-1,1-biphenyl, 3, is presented. This molecule crystallizes in the monoclinic space group P2₁/n (a = 9.440(2), b = 12.679(3), c = 11.679(3) Å = 94.60(2)° V = 1382.5(5) ų; Z = 4). One of the unique features of the X-ray structure of 3 is the intramolecular hydrogen bonding. The hydrogens of the phenolic and hydroxy groups occupies bridging positions via hydrogen bonding to an ether oxygen (O₁) and a phenolic oxygen (O₄), respectively. This hydrogen bonding does not affect the interplanar angle between phenyl rings (49.34°), which is in the range expected for ortho-disubstituted biphenyl compounds. The hydrogen bonding of this type explains why it is difficult to alkylate both phenoxy groups of 2,2-biphenol with tetrahydropyranyl protected 2-(2-chloroethoxy)ethanol.     

Preparation and X-ray structure of [(methyl quinaldate)2H]+ [AuBr4]−

The crystal structure of the title complex (R _F =0.051 for 2384 observed MoK data) consists of a packing of tetrabromoaurate(III) anions and [(methyl quinaldate)₂H]⁺ cations in which the two planar heterocyclic ring moieties are interlinked by a proton to form a NHN hydrogen bond of length 2.88(1) Å; the dihedral angle of the planes is 79.5°. The infrared spectrum of the compound is also discussed.     

Crystal and molecular structure of 2′,4′-dimethoxyflavone

C₁₇H₁₄O₄,M _r =282.3, triclinic,P-1,a=8.469(3),b=8.516(2),c=20.425(8)Å,=84.95(3),=81.98(3), =70.47(2)°,V=1373(13)ų,Z=4,D _x =1.365 g cm^–3, (MoK )=0.71069 Å,=0.91 cm^–1,F(000)=592,T=294K,R=0.038 for 3577 observed reflections (F>3 (F)). The asymmetric unit is composed of two molecules. These two molecules, which are in planar conformations, differ in 4-methoxyl group orientation. Short intramolecular contacts are found between the -benzopyran portion and the dimethoxyphenyl ring.     

Synthesis and crystal structure of 7-ethoxyl-4′-hydroxyisoflavone

7-Ethoxyl-4-hydroxyisoflavone was prepared and its crystal structure was examined by X-ray diffraction. Crystallization of the title compound occurs in the monoclinic, space group P2(1)/c with a = 11.144(2) Å, b = 10.209(1) Å, c = 13.191(2) Å, = 113.43(1) and Z = 4. The molecular structure of title compound consists of a benzopyranone moiety, a phenyl moiety, a hydroxyl and an ethoxyl group. The benzopyranone ring is not coplanar with the phenyl ring, the dihedral angle being 46.75. The ethoxyl group is nearly coplanar with its corresponding ring with the torsion angle 175.23(2). Three kinds of hydrogen bond and two kinds of aromatic stacking interaction link the title compounds into a three-dimensional networking structure.