Self-assembled dynamics of silver nanoparticles and self-assembled dynamics of 1,4-benzenedithiol adsorbed on silver nanoparticles: Surface-enhanced Raman scattering study

Self-assembled dynamics of silver nanoparticles and self-assembled dynamics of 1,4-benzenedithiol (1,4-BDT) adsorbed on silver nanoparticles were investigated experimentally with surface-enhanced Raman scattering (SERS) and theoretically with density functional theory (DFT) and finite difference time domain (FDTD) method. The absorption spectroscopy of 1,4-BDT in silver sol at different time intervals was measured, which give the indirect evidence of self-assembled dynamics of silver nanoparticles and self-assembled dynamics of 1,4-benzenedithiol (1,4-BDT) adsorbed on silver nanoparticles. To obtain the direct evidence of self-assembled dynamics of silver nanoparticles and self-assembled dynamics of 1,4-benzenedithiol (1,4-BDT) adsorbed on silver nanoparticles, the SERS of 1,4-BDT were measured experimentally and investigated theoretically. The appearances of S–S stretching band (revealing the formation of multilayers of 1,4-BDT), and strongly enhanced S–C stretching, C–C ring stretching vibrational modes clearly show self-assembled dynamics of 1,4-BDT.     

Integrated absorption coefficient of adsorbed CO

The integrated absorption coefficient ε has been measured for the stretching band of CO adsorbed on a series of oxides and zeolites. From the temperature dependences of the spectra, ε has been estimated for CO molecules whose stretching frequency is lowered due to their bonding to cationic sites of the zeolite through the oxygen atom. In accordance with the predictions of the electrostatic model, ε decreases as the vibrational frequency of CO increases.     

Enhancement of Raman Scattering of 1,4-Benzenedithiol by CdS Nanoparticles Assembled on a Silver Surface

CAS nanoparticles were assembled on the smooth surface of a piece of silver by using 1,4-benzenedithiol as coupling molecules. The SEM and resonance Raman spectroscopic characterizations demonstrate that the nanosized structure of CdS was still preserved upon assembly, and a two-dimensional structure of CdS nanoparticles was formed on the substrate surface. The FT-Raman spectra indicate that 1,4-benzenedithiol was coupled between CAS nanoparticles and the silver surface with a tilted orientation. The Raman scattering of 1,4-benzenedithiol was substantially enhanced by the assembled CdS nanoparticles, probably due to the alteration of the polarizability of 1,4-benzenedithiol and the electromagnetic interaction between the dipoles of the CdS particle with its image in the metal substrate.     

POLARIZATION OF FLUORESCENCE OF RIBOFLAVIN IN ANISOTROPIC MEDIUM

Abstract— The dichroism and anisotropy of emission of polyvinyl alcohol (PVA) film with riboflavin (RF) were measured. The short axis of the RF molecule seems to be oriented in the direction of stretching of the film. The transition moment of the weak absorption band at 300 nm is also parallel to this direction, but it forms an angle greater than 50° with the emission oscillator. The transition moments of absorption bands at 440 , 360 and 270 nm are intermediate in direction between long and short axes of the RF molecule. The extinction at 360 nm probably involves more than one electronic transition. Angles between absorption oscillators are very close to those obtained by Song and Kurtin. The mode of orientation of RF molecules suggests appearance of some type of binding between RF and the PVA matrix.     

Fluorescence images of DNA-bound YOYO between coupled silver particles

Oligonucleotide-bound silver particles were coupled through hybridization with target complementary oligonucleotides. YOYO molecules were intercalated into DNA duplexes bound between the coupled metal particles. Fluorescence images of YOYO molecules were monitored by scanning confocal microscopy. Relative to the free single YOYO, the emission brightness of the image was enhanced 80-fold after intercalating the fluorophores into the DNA duplexes between the coupled silver particles. Some images of the labeled metal particle dimers were observed to be dumbbell-shaped, suggesting that the stretching of intercalated YOYO molecules was restricted because of the orientation effect of fluorophores. The shortened lifetime of YOYO molecules between the coupled metal particles indicated that the fluorescence was enhanced via a near-field interaction mechanism between the fluorophore and the metal nanoparticle.     

银表面罗丹明6G的电化学表面增强拉曼光谱研究

罗丹明6G（Rhodamine 6G,R6G）是单分子表面增强拉曼光谱（SM-SERS）研究中最常用的探针分子之一,对R6G分子在表面吸附行为的研究有助于了解R6G分子和表面的相互作用. 本文应用电化学和电化学表面增强拉曼光谱技术,研究不同电位下R6G的银电极表面的吸附行为. 结果表明,随着电位负移罗丹明6G在银表面上从垂直吸附转为倾斜吸附,该变化和碱性条件下吸附于金纳米粒子上R6G的吸附构象一致. 这说明,在部分单分子实验中所发现的R6G反常光谱其来源是单个R6G分子在表面吸附取向变化. 本研究对后续详细分析SM-SERS研究中单分子SERS谱峰变化的机制有一定的参考价值.     

Use of the IR spectra of adsorbed ethane and propane molecules to characterize the strength of active sites in zeolites and to analyze the activation of C-H bonds in these paraffins

The adsorption and activation of ethane and propane on the hydrogen and cationic forms of mordenite, zeolite ZSM-5, and zeolite Y were studied by diffuse-reflectance IR spectroscopy. The effect of the polarization of these molecules by adsorption sites on the intensities and shifts of absorption bands due to C-H stretching vibrations were studied. It was found that weak adsorption species were formed on the hydrogen forms of the above zeolites. In this case, both the intensity distributions and the positions of absorption bands due to C-H stretching vibrations were almost independent of the nature of zeolites. However, both absorption band maximum positions and relative intensity distributions changed upon paraffin adsorption on the cationic forms. It was also found that relative intensity distributions and shifts of absorption bands due to C-H stretching vibrations strongly depended on the nature of cations and zeolites. In this case, the initially totally symmetrical C-H vibrations were found most strongly disturbed. The low-frequency shifts and relative intensities of absorption bands due to these vibrations for various cations and zeolites were found to increase in the following orders: H < Na < Ca < Mg < Zn and zeolite Y < Mord ≈ ZSM-5. The experimental results suggest that ethane and propane molecules can be used as molecular probes for acquiring information on the nature and properties of acidbase sites in zeolites. In this case, both the low-frequency shifts and the relative intensities of absorption bands due to C-H stretching vibrations can be used as measures to characterize the nature of cations and zeolites. However, the latter was found to be much more sensitive to the nature of active sites.     

Adsorption geometry variation of 1,4-benzenedimethanethiol self-assembled monolayers on Au(111) grown from the vapor phase

1,4-benzenedimethanethiol was chemisorbed from the vapor phase onto Au(111). The chemisorption geometry, molecular orientation, and bonding properties were studied at different degrees of surface coverage by photoelectron spectroscopy, metastable deexcitation spectroscopy, and near-edge x-ray absorption fine structure spectroscopy at the carbon K edge. Two main chemisorption regimes were identified: at low coverage the molecules adopt a flat configuration, then, as the molecular density of the first layer increases, the reduction of the available chemisorption sites induces the newly bonded molecules to assume a vertical alignment, with only one of the sulphur head groups interacting with the substrate. Experimental results were interpreted on the basis of theoretical calculations that we performed on the free molecule concerning the molecular orbitals' density of states and simulated x-ray absorption.     

Spectral investigations on 1,5-dipiperidino anthraquinone

Optical absorption, fluorescence emission and surface enhanced Raman spectra of 1,5-dipiperidino anthraquinone (1,5-DPAQ) have been examined to elucidate the nature of molecule in different environments. Fluorescence emission and optical absorption measurements show that the polarity of the solvent plays a vital role through intermolecular hydrogen bonding and reorientational motion of solvent molecule around excited state fluorophore. Anisotropy measurement gives the angle between absorption and emission transition dipoles. The vibrational features observed in surface enhanced Raman spectroscopy (SERS) suggest that the molecules are chemisorbed. The adsorption of the molecule is through pi electrons in the anthraquinone ring and the axial lone pair of electrons of nitrogen. The orientation of the molecule is found to be 'flat-on'.     

Adsorption of 1,4-Benzenedithiol on Gold and Silver Surfaces: Surface-Enhanced Raman Scattering Study

The adsorption behavior of 1,4-benzenedithiol (1,4-BDT) on colloidal gold and silver surfaces has been investigated by means of surface-enhanced Raman scattering (SERS). 1,4-BDT chemisorbed dissociatively on both gold and silver surfaces but as mono- and dithiolate, respectively. Regardless of the bulk concentration of 1,4-BDT, only a monolayer was assembled on the silver surface with a flat orientation by forming two Ag–S bonds. On the gold surface, the monothiolate species,1,4-BDT⁻¹, appeared to assume a rather flat orientation at a very low surface coverage, but as the surface coverage was increased, the adsorbate took a perpendicular orientation. Furthermore, when the bulk concentration of 1,4-BDT was close to that required for a full-monolayer coverage limit, a band assignable to the S–S stretching vibration appeared at 536 cm⁻¹ in the gold sol SERS spectra. A separate ellipsometry measurement performed with vacuum-evaporated gold substrates revealed that up to tetralayers could be assembled on gold in 1 mM n-hexane solution of 1,4-BDT while at best a bilayer formed in either methanol or ethanol solution. The different adsorbate structure of 1,4-BDT on gold and silver was overall quite comparable to that of p-xylene-α,α′-dithiol.     

Orientation of DNA and the agarose gel matrix in pulsed electric fields

Transient electric birefringence has been used as an analytical tool to study the orientation of DNA in agarose gels, and to study the orientation of the matrix alone. The sign of the birefringence of DNA oriented in an agarose gel is negative, as observed in free solution, indicating that the DNA molecules orient parallel to the direction of the electric field. If the median pore diameter of the gel is larger than the contour length of the DNA molecule, the DNA effectively does not see the matrix and the birefringence relaxation time is the same as observed in free solution. However, if the median pore diameter of the gel is smaller than the contour length of the DNA, the DNA molecule becomes stretched as well as oriented. For DNA molecules of moderate size (less than or equal to 4 kb), stretching in the gel causes the birefringence relaxation times to increase to the values expected for fully stretched molecules. Complete stretching is not observed for larger DNA molecules. The orientation and stretching of DNA molecules in the gel matrix indicates that end-on migration, or reptation, is a likely mechanism for DNA electrophoresis in agarose gels. When the electric field is rapidly reversed in polarity, very little change in the orientation of the DNA is observed if the DNA molecules were completely stretched and had reached their equilibrium orientation before the field was reversed in direction. Hence completely stretched, oriented DNA molecules are able to reverse their direction of migration in the electric field with little or no loss of orientation. However, if the DNA molecules were not completely stretched or if the equilibrium orientation had not been reached, substantial disorientation of the DNA molecules is observed at field reversal. The forced rate of disorientation in the reversing field is faster than the field-free rate of disorientation. Complicated patterns of reorientation can be observed after field reversal, depending on the degree of orientation in the original field direction. The effect of pulsed electric fields on the orientation of the agarose gel matrix itself was also investigated.(ABSTRACT TRUNCATED AT 400 WORDS)     

Surface enhanced Raman scattering of 2,2' biquinoline adsorbed on colloidal silver particles

Surface enhanced Raman scattering (SERS) in silver sol and normal Raman spectra in the bulk and in solution of 2,2' biquinoline (BQ) molecule have been investigated. The observed Raman bands along with their corresponding FTIR bands have been assigned based on the established assignments of the vibrational bands of the parent napthalene and quinoline molecules. Existence of both the cis and trans form of the BQ molecule in solution and in the bulk are inferred from the normal Raman and FTIR spectra, whereas SERS study reveal that in the surface adsorbed state the molecule exists in the cis form. Definite evidence of the charge transfer interaction to the overall contribution in the SER enhancement have been reported. The excitation profile also supports the CT interaction. Estimated enhancement factor of the principal SERS bands indicate that the molecule is adsorbed on the silver surface through both the nitrogen atoms with the molecular plane almost perpendicular to the surface. This preferred orientation of the molecule is in conformity with its existence in the cis form in the surface adsorbed state.     

Concentration-dependent surface-enhanced Raman scattering of 2-benzoylpyridine adsorbed on colloidal silver particles

Surface-enhanced Raman scattering (SERS) of 2-benzoylpyridine (2-BP) adsorbed on silver hydrosols has been investigated. It has been observed that with a small change in the adsorbate concentration, the SER spectra of 2-BP show significant change in their features, indicating different orientational changes of the different part of the flexible molecule on the colloidal silver surface with adsorbate concentration. The time dependence of the SER spectra of the molecule has been explained in terms of aggregation of colloidal silver particles and co-adsorption and replacement kinetics of the adsorbed solute and solvent molecules on the silver surface. The broad long-wavelength band in the absorption spectra of the silver sol due to solute-induced coagulation of colloidal silver particles is found to be red-shifted with the increase in adsorbate concentration. The surface-enhanced Raman excitation profiles indicate that the resonance of the Raman excitation radiation with the new aggregation band contributes more to the SERS intensity than that with the original sol band.     

A discrete interaction model/quantum mechanical method to describe the interaction of metal nanoparticles and molecular absorption

A frequency-dependent quantum mechanics/molecular mechanics method for the calculation of response properties of molecules adsorbed on metal nanoparticles is presented. This discrete interaction model/quantum mechanics (DIM/QM) method represents the nanoparticle atomistically, thus accounting for the local environment of the nanoparticle surface on the optical properties of the adsorbed molecule. Using the DIM/QM method, we investigate the coupling between the absorption of a silver nanoparticle and of a substituted naphthoquinone. This system is chosen since it shows strong coupling due to a molecular absorption peak that overlaps with the plasmon excitation in the metal nanoparticle. We show that there is a strong dependence not only on the distance of the molecule from the metal nanoparticle but also on its orientation relative to the nanoparticle. We find that when the transition dipole moment of an excitation is oriented towards the nanoparticle there is a significant increase in the molecular absorption as a result of coupling to the metal nanoparticle. In contrast, we find that the molecular absorption is decreased when the transition dipole moment is oriented parallel to the metal nanoparticle. The coupling between the molecule and the metal nanoparticle is found to be surprisingly long range and important on a length scale comparable to the size of the metal nanoparticle. A simple analytical model that describes the molecule and the metal nanoparticle as two interacting point objects is found to be in excellent agreement with the full DIM/QM calculations over the entire range studied. The results presented here are important for understanding plasmon-exciton hybridization, plasmon enhanced photochemistry, and single-molecule surface-enhanced Raman scattering.     

Binding characteristics of pyridine on Ag(110)

A combination of low-temperature scanning tunneling microscopy and density functional theory calculations was used to determine the binding characteristics of single pyridine molecules at a low coverage on a silver surface. The results indicated that pyridine binds to silver through the nitrogen atom in either a perpendicular or a parallel configuration with the latter structure being more prevalent. Both configurations are produced predominantly through electrostatic interaction between nitrogen and silver atoms. This is induced by charge redistribution in the pyridine molecule and nearby silver atoms upon pyridine adsorption.     

A clear-cut experimental method to discriminate between in-plane and out-of-plane molecular transition moments

A new method to orient organic molecules, based on their absorption as guest of the crystalline nanoporous delta phase of uniaxially stretched syndiotactic polystyrene films, is presented. This molecular alignment method not only allows high degrees of guest orientation to be attained but also orients the planar guest molecules with their smallest cross section nearly parallel to the stretching direction (B) rather than perpendicular (A, as usual for absorption in amorphous polymeric phases). As a consequence, in-plane and out-of-plane transition moment vectors maximize their absorption intensities for light polarization nearly perpendicular and parallel to the stretching direction, respectively. Hence, simple linear dichroism measurements by polarized spectra can allow an easy and clear-cut discrimination between in-plane and out-of-plane guest transition moment vectors.     

Surface-enhanced resonance Raman scattering and density functional calculations of hemicyanine adsorbed on colloidal silver surface

Resonance Raman (RR) and surface-enhanced resonance Raman scattering (SERRS) of 4'-(N,N'-dimethylaminostyryl)-4-propylpyridinium bromide (hemicyanine, HC dye) in acetonitrile solution and on a colloidal silver surface have been investigated. The structure of the dye in the ground (S0) and excited (S1) electronic states was optimized using density functional calculations along with the B3LYP and the configuration interaction with the singlet excitation (CIS) methods, respectively, using the 6-31G basis set. The vibrational frequencies of the molecule were computed at the optimized geometry and compared with the observed Raman bands. A complete normal-mode analysis has been carried out because it is essential for the accurate assignment of the vibrational spectra. From the observed enhancement along various in-plane and out-of-plane vibrations in the SERRS spectrum and from theoretical calculations, it has been inferred that the interaction with the silver surface occurs via the nitrogen lone pair of the pyridyl or the dimethylamino group of the molecule with a tilted orientation. The observed red-shifts in the SERRS spectrum along various vibrations indicate strong interaction (chemisorption) of the HC dye with the silver surface. This is also supported by the presence of a Ag-N stretching vibration at 241 cm(-1). The effect of the dye concentration on the orientation of the molecule is also discussed.     

Surface-enhanced Raman scattering and the adsorption behavior of (RS)-phenylsuccinic acid

The surface geometry of (RS)-phenylsuccinic acid molecule was studied by analysis of the SERS spectra of aromatic dicarboxylic acid adsorbed on silver colloid surfaces. For a reliable analysis of the SERS spectrum, we also performed density functional theoretical calculations. The SERS spectral features indicated that the RSPSA molecules should bound to the silver as dicarboxylate, with a strongly tilted orientation with respect to the normal to the surface. Such a tilted orientation was presumed to occur by the simultaneous sigma and pi-type coordination of carboxylate groups to silver surface caused by the steric hindrance and electrostatic repulsion between the two carboxylate groups, and thereby RSPSA on silver was easily displaced with aromatic carboxylic acids. A sigma-type coordination therefore seemed to be more important than a pi-type coordination for aromatic carboxylic acid derivatives to assemble on a silver surface. The large enhancement of in-plane bending, out of plane bending and ring breathing modes in the surface-enhanced Raman scattering spectrum indicates that the molecule is adsorbed on the silver surface in a 'at least vertical' configuration, with the ring perpendicular to the silver surface.     

Experimental and theoretical surface enhanced Raman scattering study of 2-amino-4-methylbenzothiazole adsorbed on colloidal silver particles

The adsorption of 2-amino-4-methylbenzothiazole (2-AMBT) on colloidal silver particles has been investigated by a surface enhanced Raman scattering (SERS) study. The SERS spectra of the 2-AMBT molecule at varied adsorbate concentrations recorded in different time domains are compared with its Fourier transform infrared (FTIR) spectrum and normal Raman spectrum (NRS) in the bulk and in solution. The experimentally observed SERS spectra are compared with the theoretically modeled surface complexes using ab initio restricted Hatree-Fock (RHF) and density functional theory (DFT) calculations. The most favorable adsorptive sites of the 2-AMBT molecule have been estimated by natural population analysis (NPA) using the above-mentioned high level of theories. The enhancement of the in-plane modes together with the appearance of Ag-N stretching frequency at 215 cm(-1) indicates that the 2-AMBT molecule is adsorbed on the silver surface through the lone pair electrons of both nitrogen atoms with the molecular plane nearly vertical to the surface.     

Infrared spectra of the water-nitrogen complexes (H2O)2-(N2)n(n = 1-4) in argon matrices

The infrared spectra of the water-nitrogen complexes trapped in argon matrices have been studied with Fourier transform infrared absorption spectroscopy. The absorption lines of the H20-N2 1:1, 1:2, 1:n, and 2:1 complexes have been confirmed on the basis of the concentration effects. In addition, we have observed a few lines and propose the assignments for the 2:2, 2:3, and 2:4 complexes in the nu1 symmetric stretching and nu2 bending regions of the proton-acceptor molecule, and in the bonded OH stretching region of the proton-donor molecule. The redshifts in the bonded OH stretching mode and blueshifts in the OH bending mode suggest that the hydrogen bonds in the (H2O)2-(N2)n complexes with n = 1-4 are strengthened by the cooperative effects compared to the pure H2O dimer. Two absorption bands due to the 3:n complexes are also observed near the bonded OH stretching region of the H2O trimer.