A reversible fluorescent INHIBIT logic gate for determination of silver and iodide based on the use of graphene oxide and a silver–selective probe DNA

We describe a reversible fluorescent DNA–based INHIBIT logic gate for the determination of silver(I) and iodide ions using graphene oxide (GO) as a signal transducer and Ag(I) and iodide as mechanical activators. The basic performance, optimized conditions, sensitivity and selectivity of the logic gate were investigated and revealed that the method is highly sensitive and selective over potentially interfering ions. The limits of detection for Ag(I) and iodide are 10 nM and 50 nM, respectively. This logic gate was successfully applied to the determination of Ag(I) and iodide in (spiked) tap water and river water. It was also used for the determination of iodide in human urine samples with satisfactory results. Compared to other methods, this INHIBIT logic gate is simple in design and has small background interference.

A simple and reversible fluorescent DNA-based INHIBIT logic gate is designed by using graphene oxide as a signal transducer and silver ions and iodide as mechanical activators.

     

A rhodamine hydrazide–4-nitroindole-3-carboxaldehyde based turn on Hg2+ chemosensor: cytoplasmic live cell imaging,logic gate and memory device applications and computational studies

A new, highly sensitive probe L² for the selective detection of Hg²⁺ in organo-aqueous (H₂O:CH₃CN, 1:1, v/v, HEPES buffer, pH 7.2) medium has been synthesized from rhodamine 6G-hydrazide and 4-nitroindole-3-carboxaldehyde. It was thoroughly characterized by physicochemical techniques including single crystal X-ray diffraction studies. The reaction of L² with Hg²⁺ gives a 1:1 stoichiometry resulting in a 146 fold fluorescence enhancement and a binding constant (K_f) of 3?×?10⁴ M^?1. The spirolactam form of the probe is non-fluorescent; however, it shows dual channel (absorbance and fluorescence) recognition of Hg²⁺ via CHEF effect through the opening of the spirolactam ring. The quantum yields of L² (0.00045) and L²-Hg²⁺ (0.29) show the higher stability of complex in the excited state over the free ligand. The 44.5?nM LOD value demonstrates the detection of Hg²⁺ at a very low concentration range. Cell imaging studies show the cytoplasmic recognition of Hg²⁺ by L². Experimental results are comparable with theoretical values obtained by DFT studies. The fluorescence emission of the complex was completely quenched by I^- and from the reversibility studies an advance level INHIBIT logic gate and memory device can be framed.     

In vitro magnetic hyperthermia response of iron oxide MNP’s incorporated in DA3, MCF-7 and HeLa cancer cell lines

In the current work, iron oxide magnetic nanoparticles (MNP’s) were synthesized by thermal decomposition of Fe(acac)₃-(iron acetylacetonate) compounds in high-boiling organic solvents containing stabilizing surfactants and examined as possible agents for magnetic hyperthermia treatment, according to their structural, magnetic and heating properties. Three different cancer cell lines (DA3, MCF-7 and HeLa cell lines) were used to assess the suitability of the MNP’s. The experimental results proved that the synthesized MNPs are non-toxic and the uptake efficiency was extremely good. Further, from in vitro hyperthermia results, very fast thermal response was observed (reaching hyperthermia levels in less than 200 s), which minimize the duration of the cell and human body exposure in a high frequency AC external magnetic field.      

Push–pull effect on the geometries,electronic and optical properties of thiophene based dye-sensitized solar cell materials

Geometries, electronic structure and electronic absorption spectra of thiophene based dye-sensitized solar cells were performed using Density Functional Theory (DFT) and time dependent density functional theory (TD-DFT). Different electron donating and electron withdrawing groups have been substituted. Geometries and electronic properties have been computed at B3LYP/6-31G⁷ and absorption spectra at TD-B3LYP/6-31G⁷ level of theory. Major change in bond lengths and bond angles occurs in the system where there is electron withdrawing or electron donating groups have been substituted. In SYSTEM-2 and SYSTEM-3 intra charge transfer has been observed. HOMO of SYSTEM-2 and SYSTEM-3 is delocalized on left side while LUMO on right side of the molecule. In SYSTEM-1, HOMO is on left side while LUMO is in the center. The designed systems show two absorption peaks for each of the system. In short, choice of appropriate electron withdrawing and donating groups is very important for improving the performance of dye-sensitized solar cells.     

Smart,self-repair polymers based on acryloyl-6-aminocaproic acid and modified with magnetic nanoparticles—preparation and characterization

Capability of materials to self-repair is an innovative and unique property from a point of view both chemistry and physics. Moreover, such property could arouse special interests if such an ability could be caused by the selection of the environmental parameters. Such materials—polymers based on acryloyl-6-aminocaproic acid (A6ACA)—were synthesized in the present paper. In addition, mentioned polymers have been modified with different amount of magnetic nanoparticles solution. Subsequently, sorption capacity and behavior of synthesized polymers in simulated body fluids have been determined. What is also important, studies on cytotoxicity of prepared materials in relation to fibroblasts and cells of cancer origin have been conducted. Materials have also been analyzed by Fourier transform infrared spectroscopy and scanning electron microscopy method. Based on the research aiming at physicochemical characteristics of abovementioned materials it was proved that prepared hydrogels showed self-repair property in a low pH environment. Apart from this essential issue, these were characterized by high sorption capacity, high porosity which decreases with the introduced amount of nanoparticles and, what is important, cytotoxicity to cancer cells. Such combination is a very interesting from a point of view of many realms and due to its unique features may be widely applicable in the nearest future.     

Ln(III)-MOFs (Ln = Tb,Eu, Dy,and Sm) based on triazole carboxylic ligand with carboxylate and nitrogen donors with applications as chemical sensors and magnetic materials

Abstract

Using a triazole carboxylic ligand (H₂L = 4-(1H-1,2,4-triazol-1-yl) isophthalic acid), four water-stable lanthanide metal–organic frameworks (Ln(III)-MOFs) (1-Ln, Ln(III) = Tb, Eu, Dy, and Sm), [Ln(L)(HL)(H₂O)₂], where the deprotonated H₂L ligands have two different coordination modes: L^2? and HL^? [(a): η²μ₂χ², η²μ₁χ²; (b): η²μ₁χ²], have been synthesized by solvothermal reaction and characterized by elemental analysis, FT-IR spectroscopy, powder X-ray diffraction (PXRD), and thermogravimetric analysis (TGA). Single-crystal X-ray diffraction analyses show that Ln(III)-MOFs are isostructural with 2D-layered structures with uncoordinated carboxylic and triazole groups. The luminescent properties of 1-Tb in aqueous solution containing different cationic solutions and small organic solvents have been explored under ultraviolet irradiation at room temperature. The high quenching constant K_SV values and low detection limits indicate that 1-Tb exhibits extremely high detection sensitivity and selectivity toward Fe³⁺ ions and nitrobenzene; 1-Tb can keep its original network and be reused after the sensing experiments, which provide us with an optical material for detecting Fe³⁺ ions and nitrobenzene. Magnetic studies show that antiferromagnetic exchange interactions exist between Dy(III) ions in 1-Dy.     

An amperometric penicillin biosensor with enhanced sensitivity based on co-immobilization of carbon nanotubes, hematein, and β-lactamase on glassy carbon electrode

An amperometric penicillin biosensor with enhanced sensitivity was successfully developed by co-immobilization of multi-walled carbon nanotubes (MWCNTs), hematein, and β-lactamase on glassy carbon electrode using a layer-by-layer assembly technique. Under catalysis of the immobilized enzyme, penicillin was hydrolyzed, decreasing the local pH. The pH change was monitored amperometrically with hematein as a pH-sensitive redox probe. MWCNTs were used as an electron transfer enhancer as well as an efficient immobilization matrix for the sensitivity enhancement. The effects of immobilization procedure, working potential, enzyme quantity, buffer concentration, and sample matrix were investigated. The biosensor offered a minimum detection limit of 50 nM (19 μg L⁻¹) for penicillin V, lower than those of the conventional pH change-based biosensors by more than two orders of magnitude. The electrode-to-electrode variation of the response sensitivity was 7.0% RSD.     

Ultrasensitive aflatoxin B1 assay based on FRET from aptamer labelled fluorescent polymer dots to silver nanoparticles labeled with complementary DNA

The authors describe a new method for the selective detection of aflatoxin B1 (AFB1) by an off-on signaling procedure in a fluorescence resonance energy transfer (FRET)-based nanobioprobe. An amino-modified aptamer against AFB1 was conjugated to fluorescent polymer dots, containing poly[(9,9-dioctylfluorenyl-2,7-diyl)-co-(1,4-benzo-thiadiazole)] as the fluorophore. Complementary DNA (cDNA) was conjugated to silver nanoparticles (cDNA-AgNPs) which act as FRET acceptors. Mixed in solution, in the absence of AFB1, the aptamer and its cDNA hybridize to form (aptamer-cDNA). This brings the polymer dots into close proximity of the AgNPs and result in FRET from the donor to the acceptor due to spectral overlap between the emission of the polymer dots and the absorption of the AgNPs. The fluorescence of the polymer dots probe is thereby switched off. However, in the presence of AFB1, the aptamer with high affinity for AFB1 will be released from the cDNA-AgNP aggregate, which results in recovery of fluorescence (“switch on” state). The yellow fluorescence of the polymer dots, best measured at 538 nm, increases linearly in the 5 pg·mL^?1 to 1.0 ng·mL^?1 AFB1 concentration range, with a 0.3 pg·mL-1 detection limit. The assay was successfully applied to the detection of AFB1 in (spiked) wheat flour, and the results were found to be in satisfactory agreement with those obtained by an enzyme-linked immunosorbent assay.

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Graphical abstract An efficient FRET-based nano-bio-probe was developed for the selective detection of Aflatoxin B1 (AFB1). In the absence of AFB1, the hybridization occurred between anti-aptamer AFB1 linked to polymer dots and its cDNA conjugated to AgNPs that led to FRET from the polymer dots to the AgNPs. By adding AFB1, the AgNP-cDNA was released resulting in linear recovery of the fluorescence of polymer dots in an appropriate AFB1 concentration range.

     

Chiral separation on achiral stationary phases with different functionalities using β-cyclodextrin in the mobile phase and application to bioanalysis and coupled columns

Summary -cyclodextrin was used in the mobile phase as chiral selector for separating the enantiomers of terbutaline, chlorthalidone and oxazepam. The effect on chiral resolution using e.g. hydrophobic, polar or cation exchanging stationary phases was investigated. Both the chiral separation factor and retention level were affected by the concentration of methanol and -cyclodextrin. The stationary phase had no effect on the chiral separation only on the level of retention. By tuning the concentration of -cyclodextrin and methanol in the mobile phase chiral separation could be obtained on most stationary phases. By changing the stationary phase while adjusting the mobile phase composition to maintain the chiral selectivity, improvements of the selectivity towards e.g. endogenous compounds can be obtained when separating enantiomers in complex matrixes as biological fluids. Further improvement on selectivity can be obtained if coupled columns are used. This is examplified for separation of chlorthalidone and terbutaline enantiomers in biological fluids by coupling an achiral column to another achiral column and using a mobile phase containing -cyclodextrin on the last column.     

An in silico approach to design peptide mimetics based on docking and molecular dynamics simulation of EGFR–matuzumab complex

Epidermal growth factor receptor (EGFR) plays an essential role in anticancer therapy. Matuzumab is an antibody for the treatment of colorectal, lung and stomach cancer. Matuzumab binds efficiently to EGFR and blocks its phosphorylation. The recent clinical successes have established application of peptides for cancer treatment. The present contribution introduces an in silico approach to design peptides based on molecular dynamics simulation (MDs) of the matuzumab-EGFR complex in water environment. Moreover, principal component analysis has been used to select multiple conformations of the complex in MDs for designing the peptides. The paratope and epitope in each conformation of the complex were determined, and the alanine scanning was used to identify the hot spots of EGFR conformers. The conformations of the peptides were optimized using PEP-FOLD server and MDs. The selected conformations were analyzed in a docking study to realize the binding site of the EGFR. Finally, pharmokinetics properties of the peptides were calculated. The designed oligopeptides were EWRSYYYWH, YYYWHNEWN, YYYWHNEWS and HNHSRNYGS with a higher affinity to the EGFR relative to the previously reported peptides. The newly designed peptides were investigated for their in vivo toxicities on rats, and all of them were non-toxic.     

Determination of polyamines in urine via electrospun nanofibers–based solid-phase extraction coupled with GC-MS and application to gastric cancer patients

The simultaneous determination of polyamines and their metabolites in urine samples was achieved by gas chromatography–mass spectrometry in the selected ion monitoring mode. After conjugating with the ion-pair reagent bis-2-ethylhexylphosphate in the aqueous phase, the polyamines in the samples were extracted with polystyrene nanofiber-based packed-fiber solid-phase extraction followed by a derivatization step using pentafluoropropionyl anhydride. With optimal conditions, all analytes were separated well. For analytes of putrescine, cadaverine, N-acetylputrescine, and N-acetylcadaverine, the linearity was good in the range of 0.05–500 μmol/L (R² ≥ 0.993). While for spermidine, spermine, acetylspermidine, N⁸-acetylspermidine, and N-acetylspermine, the linearity was good in the range of 0.5–500 μmol/L (R² ≥ 0.990). The recoveries of three spiked concentrations (0.5, 5, 300 μmol/L) were 85.6%–108.4%, and relative standard deviations for intra- and interday were in the range of 2.9%–13.4% and 4.5%–15.1%, respectively. The method was successfully applied to the analysis of urine samples of gastric cancer patients. The results showed that the levels of most polyamines and N-acetylated polyamines from the patient group were significantly higher than those from the control group. The altered concentrations of the above-mentioned metabolites suggest their role in the pathogenesis of gastric cancer, and they should be further evaluated as potential markers of gastric cancer.     

Complex formation of light and heavy lanthanides with DGA and DOODA,and its application to mutual separation in DGA–DOODA extraction system

We studied the stepwise formation constants (β) of water-soluble diglycolamide (DGA) and dioxaoctanediamide (DOODA) for the mutual separation of Ln in a solvent extraction system. TODGA (N,N,N?,N?-tetraoctyl-diglycolamide) and DOODA(C8) (N,N,N?,N?-tetraoctyl-dioxaoctanediamide) exhibit opposite behaviors in extracting both light and heavy Ln through Ln-patterns. Metal complexes of two- and three-folding with water-soluble DOODA and DGA, respectively, were found, and each β value was calculated using distribution ratios. Taking β, their distribution ratio, D, and separation factor, SF, values into consideration, the suitable separation conditions (aqueous phase: 30 mM DOODA(C2) in 1 M HNO₃; organic phase: 0.1 M TODGA in n-dodecane) of multistage extraction (10?×?10 extraction using aqueous and organic phases, including one sample solution) were determined. In this study, La, Pr, and Nd were mainly present in the aqueous phase, whereas Sm–Dy existed in the organic phase. Although these two groups can be easily separated into two phases, the resolution, Rs, values provide for little mutual separation between La–Nd and Sm–Dy under the present conditions.

     

Experimental and Theoretical Constraints on pH Measurements with an Iridium Oxide Electrode in Aqueous Fluids from 25 to 175 °C and 25 MPa

In-situ measurement of pH at elevated temperatures and pressures is of major importance for investigating chemical and biochemical systems in extreme environments. Based on the performance of the newly developed IrO _x electrode at 25 °C, we initiated a series of experiments to test the electrode at elevated temperatures (100 to 175 °C) and high pressure (25 MPa). The experiment was carried out in a titanium flow-through reactor. Our results revealed good pH response at 100, 150 and 175 °C, with good Nernstian slopes at 100 and 150 °C. Although a greater-than-Nernstian response was observed at 175 °C, the factors that cause this difference are attributed to the accuracy of calculations of the distribution of aqueous species rather than alteration of the IrO _x surface. A key problem that may limit applications of the IrO _x electrode at elevated temperatures and pressures is the noticeable shift in E° during the 175 °C (25 MPa) experiments and between experiments with similar conditions at 150 °C. The results of tests from 25 °C to elevated temperatures provide highly useful information on the reversibility and functionality of the IrO _x -pH sensor with implications for the suitability of its use under challenging chemical and physical conditions.     

Total and inorganic arsenic in dietary supplements based on herbs, other botanicals and algae—a possible contributor to inorganic arsenic exposure

The content of total and inorganic arsenic was determined in 16 dietary supplements based on herbs, other botanicals and algae purchased on the Danish market. The dietary supplements originated from various regions, including Asia, Europe and USA. The contents of total and inorganic arsenic was determined by inductively coupled plasma mass spectrometry (ICP-MS) and anion exchange HPLC-ICP-MS, respectively, were in the range of 0.58 to 5.0 mgkg^?1 and 0.03 to 3.2 mg?kg^?1, respectively, with a ratio between inorganic arsenic and total arsenic ranging between 5 and 100 %. Consumption of the recommended dose of the individual dietary supplement would lead to an exposure to inorganic arsenic within the range of 0.07 to 13 μg?day^?1. Such exposure from dietary supplements would in worst case constitute 62.4 % of the range of benchmark dose lower confidence limit values (BMDL₀₁ at 0.3 to 8 μg kg bw^?1 kg^?1 day^?1) put down by European Food Safety Authority (EFSA) in 2009, for cancers of the lung, skin and bladder, as well as skin lesions. Hence, the results demonstrate that consumption of certain dietary supplements could contribute significantly to the dietary exposure to inorganic arsenic at levels close to the toxicological limits established by EFSA.     

A novel analytical low-cost flow system based on a 0.6 MPa (84 psi) diaphragm pump applied to on-line trace pre-concentration in flame AAS and ICP-OES

A novel inexpensive 0.6 MPa (84 psi) flow system based on a low-cost diaphragm pump has been developed. The unfavourable strong pulsation of the pump has been overcome by using highly flexible silicone tubing as a pulse suppression coil. This results in a smooth pulse-free continuous flow of 100 mL min(-1) in circulation. This flow rate is much too high for a flow-injection system; however, with a restrictor capillary the flow rate required can be tapped off down to a range of 0.1-50 mL min(-1). By employing diaphragm pumps in an analytical flow system the pressure gap between HPLC pumps (2-40 MPa) and peristaltic pumps (<0.2 MPa), mainly used in FIA systems, can be filled. Due to the higher pressure delivered by diaphragm pumps relative to peristaltic pumps, the new flow system can be applied to on-line sample pre-concentration and matrix separation in flame AAS and ICP-OES by using standard HPLC pre-columns or small ion-exchange columns, respectively. In this way, very low detection limits in flame AAS have been reached (Cd 0.07 micro g L(-1), Cu 0.05 micro g L(-1), Co 0.9 micro g L(-1), Ni 0.8 micro g L(-1), Mn 0.7 micro g L(-1), Pb 0.8 micro g L(-1) and Tl 0.2 micro g L(-1)).     

An analytical strategy to characterize the pharmacokinetics and pharmacodynamics of triptorelin in rats based on simultaneous LC–MS/MS analysis of triptorelin and endogenous testosterone in rat plasma

Triptorelin, a gonadotropin-releasing hormone agonist, has been used in the treatment of hormone-responsive prostate cancer by inducing testosterone suppression. Research on the relationship between the time courses of triptorelin and testosterone is very important, but accurate quantification of triptorelin and testosterone simultaneously in biological specimens is a challenging analytical problem. In the present study, a rapid, sensitive, and selective method for simultaneous determination of triptorelin and testosterone in rat plasma by solid-phase extraction and liquid chromatography–tandem mass spectrometry was developed using a ZORBAX RRHD Eclipse Plus C8 column (2.1?×?50 mm, 1.8 μm) with a 0.05 % propionic acid/methanol gradient. In view of the polarity difference between the two analytes, two internal standards, i.e., leuprolide and testosterone-¹³C₃, were used for individual quantitation of triptorelin and testosterone. Endogenous testosterone was determined by reference to a calibration curve prepared using testosterone-D₃ as a surrogate analyte. The method exhibits excellent linearity over three orders of magnitude for each analyte. The lower limit of quantification was 0.01 ng/mL for triptorelin and 0.05 ng/mL for testosterone, with consumption of 100 μL of plasma. The method was successfully applied to characterize the pharmacokinetics and pharmacodynamics of slow-release 28-day form triptorelin acetate biodegradable microspheres in rats after intramuscular injections of three consecutive doses of 0.6 mg/kg per 28 days. The results revealed that the pharmacokinetic profile of triptorelin produced an initial flare-up in testosterone levels, rapid castration within 5 days after injection, and long-term castration until the next dose.