Importance of proper baseline identification for the subsequent kinetic analysis of derivative kinetic data

Theoretically, simulated kinetic data were used to evaluate the performance of the linear, cubic spline and Bezier mathematic interpolations (in comparison with the physically meaningful tangential area-proportional interpolation) in case of the complex kinetics involving two independent processes with different degrees of overlapping. The Bezier interpolation exhibited best performance; the linear interpolation performed significantly worse than the two other ones. In general, the data distortions caused by application of the mathematic interpolations do not significantly influence the model-free kinetic parameters—apparent activation energy and pre-exponential factor; errors below 2% occurred even for the most extremely distorted data. On the other hand, the integrated peak area and the model-based parameters such as kinetic exponents and the complexity ratio can be significantly influenced by the interpolations-caused data distortions, with the associated errors being in the order of tenths of percent. Nevertheless, the distortions associated with the choice of the thermokinetic interpolation were found to not affect the thermal stability predictions for the complex kinetic processes; only the precise predictions based on the mid-range degrees of conversion (e.g., controlled preparation of glass–ceramics) can be significantly affected by the incorrect interpolation of the thermokinetic background.

     

A new integral method for the kinetic analysis of thermogravimetric data

Methods for the calculation of activation energies, pre-exponential factors and reaction orders from thermogravimetric data are briefly reviewed. A new integral method is proposed for the determination of these kinetic parameters, using data from pairs of TG curves produced at different heating rates. Employing accurate values of the temperature integral of the Arrhenius equation, tabulated over a range ofE andT, and a simple graphical procedure, the method offers advantages of speed and accuracy over those previously reported. It is suggested that at least one of the kinetic parameters should be allowed to move freely in order to achieve the best possible fit between calculated and experimental traces.     

Critical investigation of methods for kinetic analysis of thermoanalytical data

Journal of Thermal Analysis and Calorimetry -     

Functional derivative of the kinetic energy functional for spherically symmetric systems

Ensemble non-interacting kinetic energy functional is constructed for spherically symmetric systems. The differential virial theorem is derived for the ensemble. A first-order differential equation for the functional derivative of the ensemble non-interacting kinetic energy functional and the ensemble Pauli potential is presented. This equation can be solved and a special case of the solution provides the original non-interacting kinetic energy of the density functional theory.     

Rapid identification of oxidation-induced conformational changes by kinetic analysis

Protein oxidation by reactive oxygen species is known to result in changes in the structure and function of the oxidized protein. Many proteins can tolerate multiple oxidation events before altering their conformation, while others suffer gross changes in conformation after a single oxidation event. Additionally, reactive oxygen species have been used in conjunction with mass spectrometry to map the accessible surface of proteins, often after verification that the oxidations do not alter the conformation. However, detection of oxidation-induced conformational changes by detailed kinetic oxidation analysis of individual proteolytic peptides or non-mass spectrometric analysis is labor-intensive and often requires significant amounts of sample. In this work, we describe a methodology to detect oxidation-induced conformational changes in proteins via direct analysis of the intact protein. The kinetics of addition of oxygen to unmodified protein are compared with the kinetics of addition of oxygen to the mono-oxidized protein. These changes in the rate of oxidation of the oxidized versus the non-oxidized protein are strongly correlated with increases in the random coil content as measured by the molar ellipticity at 198 nm. This methodology requires only small amounts of protein, and can be done rapidly without additional sample handling or derivatization.     

A computer program system for kinetic analysis of non-isothermal thermogravimetric data: I. Data acquisition and preparation for kinetic analysis

FORTRAN software is described which enables the generation of rate of weight change data (DTG) from percentage weight change measurements (TG), obtained under non-isothermal conditions. The program also transposes this information into the dimensionless extent and rate of reaction at unit temperature intervals by means of a cubic spline interpolation. A simple search routine identifies all DTG spikes in the thermogravimetric record, and the temperature and extent of reaction at which the rate attains its maximum value. This total information serves as input data for the kinetic analysis software to be discussed in part II of this communication. An example of the application of this program to the pyrolysis of bituminous coal is presented.     

Homolog separation, a necessity for the proper identification of fungal metabolites

Monitoring of fungal extracts for the production of novel metabolites, using a modular analytical system combining HPLC with UV-MS-ELS detection, identified culture LL-W1278 as a fungus producing new biopolymers. Only a non-routine HPLC analysis of a culture extract revealed that the standard water-acetonitrile elution method did not separate all members of the metabolite complex. Fine-tuning the eluting solvents established that it was essential to include acid with the water-methanol system to separate the new materials. The routinely used water-acetonitrile system, with or without acid, was incapable of separating all homologues. With the modified method the new homologues W1278-Ax, Bx, and Cx were separated. LC/MS analysis indicated that these compounds had molecular weights of 706, 900, and 1094, respectively, 44 mass units lower than their three major homologues, W1278-A, B, and C, identified previously. UV and NMR data as well as mass fragmentation patterns established unambiguously that the new compounds lacked a carboxyl group at the terminal resorcinol unit of the biopolymer, consisting of several catenated hydroxymellein residues. A time study concerning the stability of these fungal metabolites showed a slow, but complete degradation of the primary metabolites over several months when kept as a DMSO solution.     

Remarks on the relationship between isothermal and non-isothermal kinetic results. A new method for the kinetic analysis of isothermal data

Addition of 10mg/l of the haevy metal ions Zn⁺⁺, Cu⁺⁺, Pb⁺⁺, Cd⁺⁺ and Cr⁺⁺ to nongrowing E.coli cells shows a decrease in heat production by aerobic and anaerobic glycolysis up to 80 %. The heat production of cells incubated without glucose was decreased drastically too, after addition of 10mg/l of these heavy metal ions.The pattern of heat released during active transport of α MG was influenced by these haevy metal ions in a way, that there was a decrease in maximum heat flow, whereas the total heat production seemed to be constant.After increasing the metal ion concentration up to 100mg/l no endogenous heat production could be detected. The inhibition of heat production after addition of glucose was higher than 90 % in this case and there was a strong inhibition in α MG uptake.The results of these investigations indicate that the basic action of all tested metal ions is the energy metabolism and not the transport as stated earlier.     

Avoiding spurious correlation in analysis of chemical kinetic data

This communication demonstrates that improperly formulated data analyses can inflate the strength of statistical correlations and result in drawing incorrect conclusions. The widespread misuse of a second-order kinetic model in the recent literature reveals that many chemists are not aware of the dangers of spurious correlation.     

A general-purpose baseline estimation algorithm for spectroscopic data

A common feature of many modern technologies used in proteomics - including nuclear magnetic resonance imaging and mass spectrometry - is the generation of large amounts of data for each subject in an experiment. Extracting the signal from the background noise, however, poses significant challenges. One important part of signal extraction is the correct identification of the baseline level of the data. In this article, we propose a new algorithm (the “BXR algorithm”) for baseline estimation that can be directly applied to different types of spectroscopic data, but also can be specifically tailored to different technologies. We then show how to adapt the algorithm to a particular technology - matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry - which is rapidly gaining popularity as an analytic tool in proteomics. Finally, we compare the performance of our algorithm to that of existing algorithms for baseline estimation.The BXR algorithm is computationally efficient, robust to the type of one-sided signal that occurs in many modern applications (including NMR and mass spectrometry), and improves on existing baseline estimation algorithms. It is implemented as the function baseline in the R package FTICRMS, available either from the Comprehensive R Archive Network (http://www.r-project.org/) or from the first author.     

A new technique of analysis for the investigation of kinetic data using the differential scanning calorimeter

This method of analysis for kinetic data of solid state chemical reactions takes advantage of the binomial series expansion to normalize various mathematical expressions related to various solid state models into a power series. This facilitates analysis by computer methods, in that deviations of the various models will be perceptible at the outset.     

Differential thermometric kinetic analysis. a new general technique of interpreting the data obtained in kinetic analyses

The concentration-time data obtained in kinetic analyses may be easily and conveniently interpreted by multiparametric curve-fitting. A new technique of kinetic analysis, in which the overall extent of reaction is monitored by following the variation with time of the difference between the temperature of a reaction mixture and that of a reference solution, is described. Both these techniques are illustrated with-data obtained in oximations of mixtures of propanal-and cyclohexanone. The results confirm the existence of the synergic effect reported by Siggia and Hanna.     

A computer program system for kinetic analysis of non-isothermal thermogravimetric data: II. Generalized kinetic analysis and application to coal pyrolysis

A FORTRAN program is presented which enables the kinetic analysis of extent and rate of reaction data resulting from transposed experimental TG/DTG data obtained under non-isothermal conditions. This software allows one to perform Arrhenius, Friedman and Kissinger analyses for up to nine different solid-state rate-controlling reactions, including nth order, Avrami-Erofeev, phase boundary movement and diffusional models. Data from an investigation of the pyrolysis of a bituminous coal serve as an example of the application of the program.     

Kissinger kinetic analysis of data obtained under different heating schedules

The dynamic heating rate method developed by TA Instruments (Hi-Res^TM) is a kind of sample controlled thermal analysis in which a linear relationship between the logarithm of the heating rate and the rate of mass change is imposed. It is shown in this paper that the reacted fraction at the maximum reaction rate strongly depends on the parameters selected for the Hi-Res heating algorithm, what invalidates the use of the Kissinger method for analysing Hi-Res data unless that the reaction fits a first order kinetic law. Only in this latter case, it has been demonstrated that it is not required that a constant value of the reacted fraction at the maximum reaction rate is fulfilled for determining the activation energy from the Kissinger method. In such a case the Kissinger plot gives the real activation energy, independently of both the heating schedule used and the value of the reacted fraction, α_m, at the maximum.     

Application of multi-way data analysis on excitation-emission spectra for plant identification

The ability to distinguish among diets fed to Damascus goats using excitation-emission luminescence spectra was investigated. These diets consisted of Medicago sativa L. (alfalfa), Trifolium spp. (clover), Pistacia lentiscus, Phyllirea latifolia and Pinus brutia. The three-dimensional luminescence response surface from phosphate buffered saline (PBS) extracts of each material was analyzed using muti-way analysis chemometric tools (MPCA) and parallel factor analysis (PARAFAC). Using three principal components, the spectra from each diet material were distinguished. Additionally, fecal samples from goats fed diets of either alfalfa or clover hays were investigated. The application of MPCA and PARAFAC to these samples using models derived from the pre-digested diet materials was strongly suggestive of the utility of similarly derive training samples for the elucidation of botanical diet composition for animals.     

美沙拉秦的波谱学数据与结构表征

对美沙拉秦的红外光谱（IR）、紫外光谱（UV）、质谱（MS）、碳谱（DEPT-135）、碳氢相关谱（HMQC）予以解析和报道.对所有1H NMR和13C NMR谱的信号进行了归属;同时讨论了质谱的主要碎片离子可能的裂解方式和红外特征吸收峰所对应的官能团的振动形式.