A new type of boronic acid fluorescent reporter compound for sugar recognition

Fluorescent boronic acids that change fluorescent properties upon carbohydrate binding are very useful for the preparation of fluorescent sensors for sugars. Herein we report 5-quinolineboronic acid (5-QBA) that shows significant fluorescent property changes through a unique pK_a-switching mechanism upon binding a diol in aqueous solution.     

Thermodynamic analysis of receptors based on guanidinium/boronic acid groups for the complexation of carboxylates, alpha-hydroxycarboxylates, and diols: driving force for binding and cooperativity

The thermodynamics of guanidinium and boronic acid interactions with carboxylates, alpha-hydroxycarboxylates, and diols were studied by determination of the binding constants of a variety of different guests to four different hosts (7-10). Each host contains a different combination of guanidinium groups and boronic acids. The guests included molecules with carboxylate and/or diol moieties, such as citrate, tartrate, and fructose, among others. The Gibbs free energies of binding were determined by UV/Vis absorption spectroscopy, by use of indicator displacement assays. The receptor based on three guanidinium groups (7) was selective for the tricarboxylate guest. The receptors that incorporated boronic acids (8-10) had higher affinities for guests that included alpha-hydroxycarboxylate and catechol moieties over guests containing only carboxylates or alkanediols. Isothermal titration calorimetry revealed the enthalpic and entropic contributions to the Gibbs free energies of binding. The binding of citrate and tartrate was investigated with hosts 7-10, for which all the binding events were exothermic, with positive entropy. Because of the selectivity of hosts 8-10, a simple boronic acid (14) was also investigated and determined to be selective for alpha-hydroxycarboxylates and catechols over amino acids and alkanediols. Further, the cooperativity of 8 and 9 in binding tartrate was also investigated, revealing little or no cooperativity with 8, but negative cooperativity with 9. A linear entropy/enthalpy compensation relationship for all the hosts 7-10, 14, and the carboxylate-/diol-containing guests was also obtained. This relationship indicates that increasing enthalpy of binding is offset by similar losses in entropy for molecular recognition involving guanidinium and boronic acid groups.     

The effect of boronic acid acidity on performance of viologen-based boronic acids in a two-component optical glucose-sensing system

A two-component saccharide sensing system using the fluorescent dye, hydroxypyrene trisulfonic acid, combined with a boronic acid functional viologen as a receptor/quencher in pH 7.4 buffer solution has been further investigated. The effect of substituents on the acidity of the boronic acid was measured. The boronic acid pK_a changed in the expected manner when electron donating or withdrawing groups were present. The glucose binding constants were dependent on pK_a, but no simple correlation was observed for the Stern-Volmer quenching constants and the fluorescence signal modulation.     

Universal Reaction Mechanism of Boronic Acids with Diols in Aqueous Solution: Kinetics and the Basic Concept of a Conditional Formation Constant

To establish a detailed reaction mechanism for the condensation between a boronic acid, RB(OH)₂, and a diol, H₂L, in aqueous solution, the acid dissociation constants (${K{{{\rm BL}\hfill \atop {\rm a}\hfill}}}$ ) of boronic acid diol esters (HBLs) were determined based on the well‐established concept of conditional formation constants of metal complexes. The pK_a values of HBLs were 2.30, 2.77, and 2.00 for the reaction systems, 2,4‐difluorophenylboronic acid and chromotropic acid, 3‐nitrophenylboronic acid and alizarin red S, and phenylboronic acid and alizarin red S, respectively. A general and precise reaction mechanism of RB(OH)₂ with H₂L in aqueous solution, which can serve as a universal reaction mechanism for RB(OH)₂ and H₂L, was proposed on the basis of (a) the relative kinetic reactivities of the RB(OH)₂ and its conjugate base, that is, the boronate ion, toward H₂L, and (b) the determined pK_a values of HBLs. The use of the conditional formation constant, K′, based on the main reaction: RB(OH)₂+H₂L ${{\mathop \leftrightarrow \limits ^{K{_{1}}}_{}}}$ RB(L)(OH)^?+H₃O⁺ instead of the binding constant has been proposed for the general reaction of uncomplexed boronic acid species (B′) with uncomplexed diol species (L′) to form boronic acid diol complex species (esters, BL′) in aqueous solution at pH 5–11: B′+L′ ${{\mathop \leftrightarrow \limits ^{K{^\prime}}_{}}}$ BL′. The proposed reaction mechanism explains perfectly the formation of boronic acid diol ester in aqueous solution.     

Simple methods for the estimation of ionization constants of substituted pyridine N-oxides in polar aprotic solvents and water

A direct method for the determination of the pK _a values of acids conjugated to substituted pyridine N-oxides has been proposed which is based on the pH measurement of the solution of the basic salt. It has been experimentally shown that the method is reliable when applied to N-oxides of not too low basicity (pK _a >5). Correlation has been performed between the pK _a values in aqueous and aprotic media solutions which shows the great influence of the solvation effect on the acid-base equilibria. The good correlation between the pK _a values in aqueous and non-aqueous solutions enables the pK _a values in water to be estimated with sufficient accuracy, even in the cases when the experimental limitations make the determination impossible which is shown on the basis of selected examples.     

Calculations of pKa values of carboxylic acids in aqueous solution using Möller-Plesset perturbation theory

The acidity constants of some carboxylic acids in aqueous solution have been calculated. The calculations were carried out using Möller-Plesset (MP) perturbation theory. The Polarizable Continuum Model (PCM) is used to describe the solvent. This model furnishes pK_a values that agree more closely with experimental data than those obtained at the level of Hartree-Fock (HF) and Density Functional Theory (DFT-B3LYP). The root-mean-square of errors of the calculated pK_a values are less than 1.0 for the studied acids. The molecules analyzed consist of acids with pK_a values in the range of 1.30 to 5.05, and have been partitioned into three classes. Class I includes acids with pK_a values higher than 4.00. Class II includes strong acids with pK_a values between 3.00 to 4.00. Class III includes very strong acids with pK_a values less than 3.00. The calculated pK_a values for the acids in Class I and Class II agree more closely with experimental values. The root-mean-square of errors for the Class I and Class II compounds are 0.70 and 0.78 pK_a units, respectively.     

Reversed Phase High Performance Liquid Chromatography Using Carboxylic Acids in the Mobile Phase

Abstract

This report describes the use of different carboxylic acids as mobile phase modifiers. The effect on retention of acid chain length, pH, and eluent composition for a series of phenylalkanols, phenol, and the amines aniline, N-methylaniline, and benzylamine is discussed. The retention of both neutral and positively charged compounds is influenced by the dissociation equilibrium of the carboxylic acid in the mobile phase. By using l-pentanol to coat excess exposed silanol groups on the reversed phase column used, the inflection in the retention of both neutral and charged solutes as pH is changed occurs at the pK_a of the acid in the mobile phase. In addition, by using an acid and amine with the same or similar pK_a values, selective ion-pairing of this pair over others with dissimilar pK_a values can be promoted. Application of this technique to the selective retention of amino acids and peptides was unsuccessful.     

DOSY NMR as a tool for predicting optimal conditions for hydrogel formation: The case of a hyperbranched polyglycidol cross‐linked with boronic acids

This article demonstrates the utility of DOSY NMR for the determination of the optimal conditions for the efficient covalent, reversible cross‐linking of macromolecules in water for hydrogel formation. The studied model system was hyperbranched polyglycidol (HbPGL) containing numerous diol groups in peripheral regions and two types of boronic acids, that is, B(OH)₄^? and benzene‐1,4‐boronic diacid, as cross‐linking agents. Diffusion coefficient changes of a polymer in solution, under the influence of various concentrations of cross‐linking agent and pH, which influences the equilibrium of the reaction between boronic acids and diols, were recorded. These data are consistent with the rheological properties, namely the G′_max(ω) of hydrogels prepared under analogous conditions, from more concentrated solutions of HbPGL. This approach appears to be promising as it facilitates avoiding the loss of a large amount of polymer that is necessary for the elaboration of appropriate conditions for network formation in aqueous media. © 2016 Wiley Periodicals, Inc. J. Polym. Sci., Part B: Polym. Phys. 2016 , 54, 2171–2178     

Triple responsive block copolymers combining pH‐responsive,thermoresponsive, and glucose‐responsive behaviors

Polymers with multiple tunable responses were achieved by incorporating boronic acid functionality along the backbone of a thermoresponsive polymer. The inherent Lewis acidity and diol‐sensitivity of boronic acid moieties allowed these polymers to respond to changes in pH and glucose concentration. Through reversible addition‐fragmentation chain transfer copolymerization of boronic acid‐containing monomers with N‐isopropylacrylamide, well‐defined block copolymers were synthesized containing a hydrophilic N,N‐dimethylacrylamide block and a second, responsive block with temperature‐dependent water solubility, making the resulting polymers capable of self‐assembly into nanostructures upon heating. By incorporating boronic acids within the thermoresponsive block, the cloud point of the polymer depended on the solution conditions, including pH and diol concentration, allowing tunable cloud point ranges. © 2017 Wiley Periodicals, Inc. J. Polym. Sci., Part A: Polym. Chem. 2017 , 55, 2309–2317     

The Development of Boronic Acids as Sensors and Separation Tools

Synthetic receptors for diols that incorporate boronic acid motifs have been developed as new sensors and separation tools. Utilizing the reversible interactions of diols with boronic acids to form boronic esters under new binding regimes has provided new hydrogel constructs that have found use as dye‐displacement sensors and electrophoretic separation tools; similarly, molecular boronic‐acid‐containing chemosensors were constructed that offer applications in the sensing of diols. This review provides a somewhat‐personal perspective of developments in boronic‐acid‐mediated sensing and separation, placed in the context of the seminal works of others in the area, as well as offering a concise summary of the contributions of the co‐authors in the area. DOI 10.1002/tcr.201200006     

Multiwavelength Spectrophotometric Determination of Acid Dissociation Constants. Deconvolution of Binary Mixtures of Ionizable Compounds

ABSTRACT

A spectral deconvolution method based on target factor analysis has been developed to determine pK_a values of binary mixtures of monoprotic and/or diprotic ionizable compounds. The technique makes use of the approach of Frans and Harris, which has been implemented previously for mixtures of monoprotic compounds (Anal. Chem. 1985, 57, 1718-1721), to extract the unknown pK_a values. The method has been illustrated by using the multiwavelength spectrophotometrictitation data of binary mixtures of: I. benzoic acid and phenol, 2. benzoic acid and nicotinic acid, 3. p-aminosalicylic acid and phthalic acid. It was demonstrated that the pK_a values as determined in this study are in good agreement with the literature.     

Determination of pKa of dyes by electrical impedance spectroscopy

In this work, we analyze the electrical response of aqueous solutions of dyes as a function of pH. When the acid-base equilibrium is reached, it is possible to detect structural transitions related with changes in molecular conformation. To this, it is necessary the introduction of parallel plates into the solution and from analysis of Nyquist diagrams of samples, it is possible to determine the values of pK_a. The advantage is the absence of redox markers in solution, thus avoiding charge transfer stimulated by the diffusion processes. The effects measured on the electrical response are function of the dye molecular aggregation state, which is structurally dependent on the solution protonation conditions. The detection of aggregated molecules such as dimers, trimers, and oligomers defines Electrical Impedance Spectroscopy (EIS) as a fundamental tool for the analysis of pK_a of dyes.     

RNA-sensitive N-isopropylacrylamide/vinylphenylboronic acid random copolymer

Random copolymers of N-isopropylacrylamide (NIPA) and 4-vinylphenylboronic acid (VPBA) were obtained by solution polymerization using 2,2′-azobisizobutyronitrile as the initiator in ethanol at 65 °C. NIPA-co-VPBA copolymer exhibited both temperature- and pH-sensitivity. Thermally reversible phase transitions were observed both in the acidic and alkaline pH region for the copolymers produced with different VPBA/NIPA feed ratios. The pH dependency of the lower critical solution temperature (LCST) was stronger for the copolymers produced with higher VPBA feed concentrations. RNA was selected as a model biomolecule having vicinal-diol and amino groups that were potentially reactive with the boronic acid groups of NIPA-co-VPBA copolymer. The effect of RNA concentration on the LCST of NIPA-co-VPBA copolymer was investigated in aqueous media at different pHs. Although no significant effect was observed at pH 4, 7 or 10.5, the LCST decreased linearly with increasing RNA concentration at a pH approximately equal to the pK_a of boronic acid. This behavior was explained by considering the binding of RNA onto the copolymer chains to occur via two types of complex formation. For the formation of these complexes, the amino and vicinal-diol groups of RNA should react with the boronic acid groups of the copolymer in the tetrahedral anionic form. The results indicated that NIPA-co-VPBA copolymer could be utilized as a new reagent for the determination of RNA concentration in aqueous media. The proposed method was valid for the RNA concentration range of 0–4 g · mL⁻¹.

The schematical representation of the possible interactions between NIPA-co-VPBA copolymer and RNA. (A) A typical structure of single-stranded RNA. (B) Tetrahedral anionic form of boronic acid groups. (C) The interaction between the amino groups of the unpaired bases of RNA and the boronic acid groups of the copolymer. (D) Cyclic borate ester formation by the interaction between vicinal diol groups located at the 3′-end of RNA and boronic acid groups of the copolymer.     

Comparison of a single-use pH test strip and a glass electrode for potentiometric titration

The potentiometric titration of a carbonate mixture or an acetate solution is a common experiment in analytical laboratories. Typically, a glass electrode combined with a calomel or Ag/AgCl reference electrode is used to locate the equivalence points in neutralization titrations. The dissociation constants of weak acids and bases can be calculated from the pH at the half-neutralization point. Recently, a new commercial product for measuring pH has been developed. This novel acid–base detection strip is a single-use sensor that requires neither storage in a preservation liquid nor calibration prior to use. This study examined its suitability for the continuous monitoring of pH changes in potentiometric titrations of carbonate mixtures, acetate solutions, or ammonia solutions. There were no significant differences in the concentrations of solutions tested using a glass electrode and a pH test strip. The pK_a, pK_b, and pH values determined using the two systems differed by less than 5%. The results confirmed that the pH strips are suitable for continuously monitoring pH changes during neutralization titrations. However, the strips can only be used once.     

The Limit of Detection of a Weak Acid,in the Presence of Another,by Potentiometric Acid-Base Titrimetry and Deviation-Pattern Recognition

Abstract

When a solution containing a single monobasic weak acid is titrated potentiometrically with a strong base, non-linear regression analysis of the data yields a random scatter of the residuals around the best fit to the appropriate equation. If the same equation is used when a second weak acid is also present, systematic errors arise and yield a deviation plot having a characteristic shape. If the amplitude of that plot is substantially larger than the random error of measurement, the presence of the second acid can be detected, and its concentration can then be evaluated by non-linear regression onto the equation that takes its presence into account. The amplitude increases as the relative concentration of the second acid increases, and as the difference between the values of pK_a for the two acids increases. Examination of these dependences shows, for example, that it should be possible to detect 1 per cent of an impurity for which pK_a differs by 0.57 unit from that of the major component.     

Validation of pH-Metric Technique for Measurement of pKa and log Pow of Ionizable Herbicides

Abstract

Knowing the values of pK_a and partition coefficients between 1-octanol and water (P_ow) of ionizable herbicides helps us to understand the movement of these compounds in plants and soil. However, shake-flask and high-pressure liquid chromatography (HPLC) techniques. though valuable for measurement of log P_ow of herbicide molecules that do not ionize in aqueous solution, are difficult to use for ionizable molecules; this is especially so for molecules that form ion pairs having appreciable log P_ow values, those with multiple ionizations and for bases with high pK_a values. Our aim in this study was to validate the use of the pH-metric technique (based on potentiometric titration) for measurements of pK_a and log P_ow of ionizable standard substances and herbicides. The values obtained show good correlation with results from other techniques, including shake-flask and HPLC. The OECD Guideline for Testing of Chemicals 117, adopted 30th March 1989, describes the use of HPLC for the measurement of log P_ow. It is hoped that these studies and further testing of this technique will permit it to be included in these OECD guidelines.     

The design of boronic acid spectroscopic reporter compounds by taking advantage of the pK(a)-lowering effect of diol binding: nitrophenol-based color reporters for diols

The complex that forms between a boronic acid and a diol is often much more acidic than the starting boronic acid. In conditions where the solution pH is between the two pK(a) values, the boron atom will convert from a neutral trigonal form to an anionic tetrahedral form upon complexation. Such a change is likely to dramatically alter the electron density of neighboring groups. Utilizing this effect, we have designed and synthesized two nitrophenol-based boronic acid reporter compounds that change ionization states and therefore spectroscopic properties upon diol binding. Both compounds show significant UV changes upon addition of saccharides. For example, a blue shift of the absorption max from 373 to 332 nm was observed with the addition of D-fructose to 2-hydroxy-5-nitrophenylboronic acid at neutral pH. Such a reporter compound can be used as a recognition and signaling unit for the construction of polyboronic acid sensors for the selective and specific recognitions of saccharides of biological significance.     

The connection between the ionization constants of alkaloids and their basicities

Summary 1. The pK_a values of a number of indole alkaloids ofVinca erecta in aqueous ethanolic solution and in chloroform have been determined.2. It has been shown that the pK_a value of an alkaloid in water or in chloroform is not connected with the pH of the transition from chloroform into a buffer solution.3. It is impossible to estimate the basicity of an alkaloid from its pK_a value.Institute of the Chemistry of Plant Substances, Academy of Sciences of the Uzbek SSR. Translated from Khimiya Prirodnykh Soedinenii, No. 1, pp. 57–59, January–February, 1973.     

Determination of Acid Dissociation Constants of Neamine by Potentiometric and Electrospray Mass Spectral Techniques

The acid dissociation constants of neamine have been measured using potentiometric titrations. The pK_a1, pK_a2, and pK_a3 values of neamine are 6.35 ± 0.2, 7.73 ± 0.15, and 8.62 ± 0.08, respectively. Neamine is readily characterized using positive-ion electrospray ionization–mass spectrometry (ESI–MS). Various protonated species and their solvated ions are mainly observed. Nevertheless, the abundances of the observed speciation over the pH range 5.0–9.8 do not reflect the variation in the bulk solution. Hence, reaction quotients determined from the ESI–MS investigations vary significantly from the pK_a's determined from potentiometric titrations, thereby illustrating that care must be taken in determining thermodynamic properties using the former technique.     

Calculation of amino acid pKaS in a protein from a continuum electrostatic model: Method and sensitivity analysis

We used continuum electrostatic theory to calculate pK_as of amino acids in protein. A Green's function formalism, based on a finite-difference solution to the Poisson–Boltzmann equation for a unit point charge, yields electrostatic potentials that allow calculation of amino acid pK_as to an estimated accuracy of tenths of a pK_a unit. Improvements over previous methods include the ability to focus the finite difference grid to arbitrarily small grid spacing, an analytical representation of the molecular surface, and a novel procedure to calculate the reaction field potential. Using this method, we performed a sensitivity analysis of calculated pK_as in the photosynthetic reaction center. Calculated pK_as are most sensitive for residues that are not well-exposed to solvent. Variations in the parameters of the continuum electrostatic model cause pK_a shifts that are larger than the accuracy of the numerical method, but probably not large enough to account for some of the discrepancies between calculated and experimentally measured pK_as that have been reported for the reaction center. © 1996 by John Wiley & Sons, Inc.