Rotation-vibration energy cluster formation in XH2D and XHD2 molecules (X = Bi, P, and Sb)

We investigate theoretically the energy cluster formation in highly excited rotational states of several pyramidal XH₂D and XHD₂ molecules (X = Bi, P, and Sb) by calculating, in a variational approach, the rotational energy levels in the vibrational ground states of these species for J?70. We show that at high J the calculated energy levels of the di-deuterated species XHD₂ exhibit distinct fourfold cluster patterns highly similar to those observed for H₂X molecules. We conclude from eigenfunction analysis that in the energy cluster states, the XHD₂ molecule rotates about a so-called localization axis which is approximately parallel to one of the X-D bonds. For the mono-deuterated XH₂D isotopologues, the rotational spectra are found to have a simple rigid-rotor structure with twofold clusters.     

Oxygen impact on quantum confinement effect for silicon clusters in different size regimes: ab initio investigations

The phenomena where the parameter like optical gap, HOMO-LUMO gap etc of a cluster will behave like a monotonic function with respect to its size is called quantum confinement effect. Here we are dealing with clusters having number of silicon atoms as 10, 16, 19, 20, 35, 54 and 78 which are representatives of different size regime clusters. For each clusters we have experimented with a number of isomers and the results we are showing are only of the stable most isomers. Then for each clusters we are capping them with oxygen atoms and calculating their optical response using DFT based calculations. We also calculate their HOMO-LUMO gap with and without oxygen atoms. The main essence of this work is mainly revolving around the variation of optical gap as well as the HOMO-LUMO gap for all the clusters with respect to their size and also whether oxygen insertion can induce any changes in quantum confinement effect. Also for Si₂₀, Si₁₉, Si₁₆ and Si₁₀ we have calculating the optical spectra with a variation of inserted oxygen on the surface of those clusters. All the calculation are performed using Vienna ab initio simulation package (VASP) and Car Parrinello molecular dynamics (CPMD) for geometry optimization. The optical spectra of the clusters are performed by real space PARSEC code and time dependent density functional theory implemented RGWBS code which takes into account the many body effects using GW and BSE equations.     

Ab initio simulations on the atomic and electronic structure of single-walled BN nanotubes and nanoarches

To simulate the perfect single-walled boron nitride nanotubes and nanoarches with armchair- and zigzag-type chiralities and uniform diameter of ∼5 nm, we have constructed their one-dimensional (1D) periodic models. In this study, we have compared the calculated properties of nanotubes with those for both hexagonal and cubic phases of bulk: bond lengths, binding energies per B-N bond, effective atomic charges as well as parameters of total and projected one-electron densities of states. For both phases of BN bulk, we have additionally verified their lattice constants. In the density functional theory (DFT), calculations performed using formalism of the localized Gaussian-type atomic functions as implemented in the CRYSTAL-06 code we have applied Hamiltonians containing either PWGGA or hybrid (DFT+HF) B3PW exchange-correlation functionals. After calculation of Hessian matrix for the optimized structures of BN bulk (both phases) and nanotubes (both chiralities) using the CRYSTAL code we have estimated their normal phonon modes within the harmonic approximation. Applying both atomistic and continuum models we have calculated the elastic energies and moduli for SW BN nanoarches. Our calculations clearly show a reproducibility of the atomic structure, effective charges and total energy, as well as phonon and elastic properties when using either PWGGA or hybrid B3PW Hamiltonians. On other hand, there is a high sensitivity of the discrete energy spectra parameters (including band gap) to the choice of the first principles approach (the hybrid method reproduce them noticeably better).     

The ring-puckering potential energy function and theoretical calculations for silacyclopent-2-ene-d0 and 1,1-d2 and the difluoro and dichloro derivatives

High level ab initio and DFT calculations have been carried out for silacyclopent-2-ene and its 1,1-d₂, 1,1-difluoro, and 1,1-dichloro derivatives. The previously published far-infrared spectra of the ring-puckering vibration, which had been interpreted to be characteristic of a rigid planar molecule, have been reanalyzed for the hydride and 1,1-d₂ derivative. Both the spectra and the theoretical calculations show the molecule to have a small barrier to planarity. The experimental data analyzed with a Gaussian barrier produce a barrier of 49 cm⁻¹ as compared to a value of 47 cm⁻¹ computed using the CCSD/6-311++G(d,p) basis set. The experimental value for the deuteride was determined to be 41 cm⁻¹ from the one-dimensional approximation. All MP2 and DFT computations for the 1,1-difluoro derivative predict a planar structure whereas the MP2 computation when used with triple-ζ basis set predicts a barrier of 13 cm⁻¹ for the chloride. Vibrational frequencies were also computed for these molecules and compared to experimental results for the characteristic frequencies for these types of molecules.     

Ab initio calculation of the deformation potentials for intervalley phonons in silicon

The fully self-consistent first-principles calculations of electron scattering from short-wavelength phonons between lower valleys in the conduction band of a silicon crystal are carried out for the first time. The calculations of the lattice constant, the electron and phonon spectra, and the scattering probabilities are performed in the framework of a unified approach within the electron density functional theory. The theory contains no phenomenological assumptions regarding the relative position of minima in the conduction band, effective masses of carriers, interatomic forces, and scattering probabilities. The electron-phonon coupling constants (deformation potentials) for symmetry-allowed f and g transitions are calculated. The calculated constants lie in the range of values measured in different experiments involving intervalley transitions in silicon.     

Effect of oxygen content and charge on the structure,stability and optoelectronic properties of yttrium oxide clusters

The electronic and geometrical structures of neutral and charged YOn (n=2–12) clusters have been investigated using density functional theory (DFT) with generalized gradient approximation. The oxygen atom in YOn has been found to be in oxo, peroxo and in superoxo forms. The geometrical structures and topologies of small size anionic clusters resemble that of neutral clusters. Yttrium showed higher coordination number than scandium. Computed results reveal the existence of YO₁₀ cluster to have a penta-peroxo oxygen with a homoleptic Y(η² –O₂)₅ geometrical configuration. The HOMO–LUMO gaps decrease with increasing n due to the increase in 2p orbital population of oxygen atoms. It has been shown that in these clusters bonding are predominantly ionic in nature and anions are thermodynamically more stable, due to the charge delocalization between the metal atom and oxygen ligands. YO₁₀⁺ and YO₁₂⁺ were found to be highly exothermic to release one and two oxygen molecules, while YO₁₁⁺ dissociates though the ozonide dissociation channel. Computed absorption spectra of small clusters are mainly contributed by yttrium metal d and s valence orbitals. The absorbance spectra, shifts towards lower energy with cluster size increase, while charge has no substantial effect on the absorption spectrum.     

Active oxidation: Silicon etching and oxide decomposition basic mechanisms using density functional theory

The etching of silicon atom from the Si(1 0 0)-p(2 × 2) surface, i.e. the desorption of SiO molecules from this surface, either clean or pre-oxidized, is investigated at the density functional theory level. The reaction paths for desorption are given as a function of the initial oxidation state of the extracted silicon atom. The associated activation energies and the atomic configurations are discussed. Particularly, it is shown that desorption of SiO molecules takes place during conventional thermal oxide growth (∼2 eV activation) via non-oxidized silicon atoms. Further SiO extraction mechanisms of higher silicon oxidation states required higher temperatures. In particular, doubly oxidized silicon atoms (Si²⁺) are able to decompose with an activation of ∼4 eV which corresponds to the actual temperature where decomposition of oxides is observed. This confirms the statement that decomposition of oxide layer nucleates at the interface with silicon where Si²⁺ has been detected thanks to XPS experiment.     

Alternate interpretation of final state relaxation for chemisorbed molecules

Ab initio Xα electronic spectra have been calculated for CO before and after chemisorption onto Ni(001) in the observed c(2 × 2) symmetry. The electronic spectra of a monolayer of C₂H₂ has also been calculated and referenced to E_F of Ni. The theoretical eigenvalue spectra of these two molecules agrees colosely with ionization potentials measured by UPS when these molecules are chemisorbed onto Ni. Charge density calculations for CO indicate that the molecular orbitais are delocalized by the COCO and CONi bonds. These results suggest that final state relaxation effects are small and possibly zero for the chemisorbed molecule and that the relaxation energy of chemisorbed molecules is approximately the correlation energy.     

Measurement of nanoparticle temperature in a (CO2) N cluster beam using SF6 molecules as tiny probe thermometers

A temperature measurement technique using SF₆ molecules as tiny probe thermometers is described, and results are presented, for large (CO₂) _N van der Waals clusters (with N ≥ 10²) in a cluster beam. The SF₆ molecules captured by (CO₂) _N clusters in crossed cluster and molecular beams sublimate (evaporate) after a certain time, carrying information about the cluster velocity and internal temperature. Experiments are performed using detection of these molecules with an uncooled pyroelectric detector and infrared multiphoton excitation. The multiphoton absorption spectra of molecules sublimating from clusters are compared with the IR multiphoton absorption spectra of SF₆ in the incoming beam. As a result, the nanoparticle temperature in the (CO₂) _N cluster beam is estimated as T _cl < 150 K. Time-of-flight measurements using a pyroelectric detector and a pulsed CO₂ laser are performed to determine the velocity (kinetic energy) of SF₆ molecules sublimating from clusters, and the cluster temperature is found to be T _cl = 105 ± 15 K. The effects of various factors on the results of nanoparticle temperature measurements are analyzed. The potential use of the proposed technique for vibrational cooling of molecules to low temperatures is discussed.     

Electron detachment spectroscopic study on carbon and silicon cluster anions

The electron detachment of mass-selected carbon and silicon cluster anions was studied using different ion-source conditions. Ultraviolet photoelectron spectra of medium-sized carbon cluster anions were measured using a laser vaporization source with different fluences. On systematic inspection, the series of spectra showed 4n-periodicity in their electron affinity, which is consistent with the predicted ring-form structure. For silicon cluster anions, resonance-enhanced multiphoton electron detachment spectra were measured. The role of the carrier gases He, N₂ and CO₂ is discussed.     

Influences of capping molecules on optical properties of nanocrystalline ZnS:Cu

ZnS:Cu nanocrystals capped with different capping molecules have been successfully synthesized by a simple aqueous method. The prepared nanocrystals were characterized by X-ray diffraction (XRD), scanning electron microscopy (SEM), and energy dispersive analysis by X-rays (EDAX). The surface characterization of the nanocrystals was done by FTIR spectroscopy. The effect of capping agents on absorption and photoluminescence (PL) spectra of the ZnS:Cu nanocrystals was studied. A blue shift of the absorption peaks was observed and attributed to a quantum confinement effect, which increases the band gap energy. The photoluminescence spectra of the capped ZnS:Cu nanocrystals showed a broad peak in the range of 460–480 nm. The intensity of the PL spectra strongly depended on the capping agents.     

Photo-absorption spectra of small hydrogenated silicon clusters using the time-dependent density functional theory

We present a systematic study of the photo-absorption spectra of various Si_nH_m clusters using the time-dependent density functional theory (TDDFT). The method uses a real-time, real-space implementation of TDDFT involving full propagation of the time dependent Kohn-Sham equations. Our results for SiH₄ and Si₂H₆ show good agreement with the earlier calculations and experimental data. We study the photo-absorption spectra of silicon clusters as a function of hydrogenation. For single hydrogenation, we find that in general, the absorption optical gap decreases showing a significant red shift for small sized clusters and as the number of silicon atoms increases the effect of a single hydrogen atom on the optical gap diminishes. For further hydrogenation the optical gap increases and for the fully hydrogenated clusters the optical gap is larger compared to corresponding pure silicon clusters corresponding to a blue shifted spectra.     

Electron tunneling in the presence of adsorbed molecules

We perform ab initio density functional theory calculations of the tunneling current through an electrode-molecule-electrode system with four different small organic molecules, benzenedithiol (BDT), benzenedimethanethiol (XYL), diethynylbenzene (DEB) and dodecanethiol (C12), sandwiched between two gold (1 1 1) electrodes. For the XYL molecule, we test the effect of alternate bonding types and sites. Although this reduces the current considerably, it does not account for the orders of magnitude differences between experimental and theoretical results in the literature. We also model a typical STM experimental setup with a gold nanoparticle absorbed on a self-assembled monolayer (SAM) of the molecule with a gap between the nanoparticle and probing tip and show that such a gap could account for these differences. Finally, we describe the effect that the gap has on the ability of STS measurements to distinguish between the i(V) characteristics and thicknesses of self-assembled monolayers of different molecules.     

Mass spectrometric size analysis of N2O-clusters

Mass spectra of N₂O-clusters in the size rangen?7,000 molecules per cluster, formed in a supersonic beam, have been recorded in a time-of-flight mass spectrometer. The spectra trace the transition from growth by successive monomer addition to growth by cluster coagulation. The influence of the ionization process and the detection probability is discussed.     

TOF-SIMS structural characterization of self-assembly monolayer of cytochrome b5 onto gold substrate

Orientation and three-dimensional structure of immobilized proteins on bio-devices are very important to assure their high performance. Time-of-flight secondary ion mass spectrometry (TOF-SIMS) is able to analyze upper surface of one layer of molecules. Orientation of immobilized proteins can be evaluated based on determination of a partial structure, representing ensemble of amino acids, on the surface part. In this study, a monolayer of cytochrome b5 was reconstituted onto gold substrate and investigated by surface plasmon resonance (SPR). After freeze-drying, the resulted protein self-assembly was evaluated using TOF-SIMS with the bismuth cluster ion source, and then TOF-SIMS spectra were analyzed to select peaks specific to cytochrome b5 and identify their chemical formula and ensembles of amino acids. The results from TOF-SIMS spectra analysis were compared to the amino acid sequence of the modified cytochrome b5 and three-dimensional structure of cytochrome b5 registered in the protein data bank. Finally, fragment-ion-generating parts of the immobilized-cytochrome b5 are determined based on the suggested residues and three-dimensional structure. These results suggest the actual structure and confirm the expected orientation of immobilized protein.     

The geometric structure of pure SF6 and mixed Ar/SF6 clusters investigated by core level photoelectron spectroscopy

The S 2p core level photoelectron spectra of Sulphurhexafluoride clusters have been investigated together with heterogeneous Ar/SF₆ clusters, created by doping Ar host clusters (with a mean size of 3600 atoms) with the molecule. Surface and bulk features are resolved both in the argon 2p and the sulphur 2p core level photoelectron spectra. For the latter level such features were only observed in the pure cluster case; a single feature characterizes the S 2p core level spectra of SF₆ doped argon clusters. From the chemical shifts, investigated with respect to SF₆ doping pressure. It can be concluded that the host clusters get smaller with increasing doping pressures and that the SF₆ molecules predominantly stay below the cluster surface, whereas the Argon core stays intact. We have neither observed features corresponding to SF₆ on the cluster surface, nor features corresponding to molecules deep inside the bulk in any of the spectra from the pick-up experiments.     

Detection of SF<Subscript>6</Subscript> molecules sublimating from the surface of (CO<Subscript>2</Subscript>)<Subscript><Emphasis Type="Italic">N</Emphasis></Subscript> nanoparticles in a cluster beam by the infrared multiphoton excitation method

It has been found that SF₆ molecules captured by large van der Waals clusters (CO₂) _N (where N ≥ 10² is the number of monomers in a cluster) in intersecting molecular and cluster beams sublimate from the surface of clusters after a certain time and carry information on the velocity and temperature (internal energy) of clusters. Experiments have been carried out for detecting these molecules by means of a pyroelectric detector and the infrared multiphoton excitation method. The multiphoton absorption spectra of molecules sublimating from the surface of clusters have been obtained. The temperature of the (CO₂) _N nanoparticles in the cluster beam has been estimated using these spectra and comparing them with the infrared multiphoton absorption spectra of SF₆ in the initial molecular beam.     

Decoupling potentials for the three-body final state Schrödinger equation of knockout reactions

In the conventional distorted wave impulse approximation (DWIA) approach the three-body final state of a knockout reaction is decoupled by assuming a plane wave form for the coupling term. The influence of this decoupling approximation on the analyses of cluster knockout reactions has been investigated for a test case where the exact solution is obtainable. A proper treatment of the coupling term causes large oscillations in the effective distorting optical potentials for the decoupled Schrödinger equation. These decoupling potentials depend strongly not only on the partial wave angular momentum,l but also on their azimuthal projection,m.     

Experimental and theoretical spectroscopic studies of ortho derivatives of methyl p-dimethylaminobenzoate

Steady-state spectroscopic studies of two ortho (-OCH₃ and -OH) derivatives of methyl p-dimethylaminobenzoate have been performed. The absorption spectra of molecules under study are analyzed taking into consideration results of quantum chemical semiempirical calculations. The fluorescence spectra of these molecules possess in polar solvents two bands, i.e., the locally excited and intramolecular charge transfer (ICT) fluorescence band. Their intensity ratio as well as the fluorescence/phosphorescence intensity ratio determined at 77 K depends on the solvent polarity. Theoretical studies of the TICT phenomenon have been made in order to explain the dual emission of molecules under study. Calculated electric dipole moments of these molecules in the ground, S₀, and excited, S₁(LE) and S₁(ICT) states, have been compared with experimentally determined data. Theoretically determined transition energies, ΔE_i, oscillator strengths, f_i, and electric dipole moments μ_S0, μ_S1(LE) and μ_S1(ICT) of the planar donor-acceptor (D/A) conformer agree with experimental data. According to Marcus theory inner- and outer-solvatation sphere reorganization energies (λ_out, λ_in) are calculated using the determined spectroscopic properties of molecules under study.