Complete 1H and 119Sn NMR spectral assignment for an asymmetric di[dihydroxotin(IV)] bis-porphyrin supramolecular host and its corresponding tetraacetato complex

The full (1)H and (119)Sn NMR spectral assignments for a di[dihydroxotin(IV)] bis-porphyrin supramolecular host I and for the di[diacetatotin(IV)] complex II are presented. Despite the lack of varied chemical functionality in these molecules, all of their 64 proton environments are non-equivalent. This is due to the asymmetry afforded by the Tr?ger's base (methanodiazocine) bridge between the porphyrin and quinoxalinoporphyrin macrocycles. The methanodiazocine bridge imparts chirality and concavity on the host framework and the quinoxalino link to one porphyrin macrocycle results in a negation of C(2) symmetry. The anisotropy of the aromatic porphyrin and quinoxalinoporphyrin macrocycles results in good dispersion for all 60 signals of the host framework and for the four ligands bound in the axial positions of the tin(IV) centres. The full assignment of the (1)H NMR spectra for these systems was achieved using dqf-COSY, NOESY, ROESY, (1)H-(119)Sn HMQC, (1)H-(13)C HSQC and (1)H-(13)C HMBC spectroscopy at temperatures that optimised dispersion. The (1)H-(119)Sn HMQC was particularly useful in this assignment. The (119)Sn chemical shift is sensitive to the functionality of the porphyrin and to the nature of the axial ligation, and the (119)Sn centre couples to both the ligand protons and the beta-pyrrolic protons. This allows unequivocal identification of the spin systems associated with each metal centre.     

Rh(III) porphyrins as building blocks for porphyrin coordination arrays: from dimers to heterometallic undecamers

The coordination chemistry of a Rh(III) porphyrin building block was investigated with a view to the construction of heterometallic arrays of porphyrins. The Rh(III) porphyrin was found to coordinate methanol in the solid state and weakly in CDCl(3) solution. Crystallization afforded five coordinate pi stacked Rh(III) porphyrins. The distribution of products from reaction of Rh(III) porphyrin with DABCO, 4,4'-bipyridine, and 4,4'-bipyrimidine could be displaced toward dimeric species by silica gel column chromatography or recrystallization which served to remove excess ligand. Weak coordination to nitriles was observed, although it was sufficiently strong to organize a dimeric complex of 5,5'-dicyano-2,2'-bipyridine in the solid state. Complexes with 4,4'-bipyrimidine and 5,5'-dicyano-2,2'-bipyridine possess uncoordinated chelating nitrogen atoms. Larger heterometallic porphyrin arrays were assembled using a combination of Sn(IV) and Rh(III) porphyrin coordination chemistry. A Sn(IV) porphyrin acted as a core around which were coordinated two isonicotinate groups, carboxylic acid functionalized porphyrins, or porphyrin trimer dendrons. Rh(III) porphyrins were coordinated to pyridyl groups at the periphery of these entities. In this way an eleven porphyrin array, with four different porphyrin metalation states, was assembled. The diamagnetic nature of both the Rh(III) and Sn(IV) porphyrins, the slow ligand exchange kinetics on the NMR time scale, and tight ligand binding permitted the porphyrin arrays to be analyzed by two-dimensional (1)H NMR techniques.     

Supramolecular bidentate phosphorus ligands based on bis-zinc(II) and bis-tin(IV) porphyrin building blocks

Selective metal-ligand interactions have been used to prepare supramolecular bidentate ligands by mixing monodentate ligands with a suitable template. For these assemblies pyridine phosphorus ligands and a zinc(II) porphyrin dimer were used. In the rhodium-catalysed hydroformylation of 1-octene and styrene improved selectivities have been obtained for some of the assembled bidentate ligand systems. In the palladium catalysed asymmetric allylic alkylation similar effects were observed; the enantioselectivity increased by using a bisporphyrin template. The preparation of supramolecular catalyst systems was also explored using tin-oxygen interactions. Dihydroxotin(IV) porphyrin and carboxylic phosphorus ligands assemble into supramolecular ligands and the phosphorus donor atom coordinates to transition metals. The stronger oxygen-tin bond, compared to pyridine-zinc does not result in a better performance of the catalyst.     

Investigations of rotamers in diaxial Sn(IV)porphyrin phenolates—towards a molecular timepiece

An approach to the formation of molecular timepieces is outlined based on differentiating between rotamers in diaxial Sn(IV) porphyrin phenolates. Two models are explored in detail. The first explores how the rates of rotation of the diaxial ligands is discriminated based on steric hindrance of the two porphyrin macrocycle faces at low temperature. The second model explores a ‘stopwatch’ function based on the ligation of Ag(I) ions to a 5,15-dipyridylporphyrinato tin(IV) complex bearing 3-hydroxypyridine ligands. The complexation inhibits rotation of the axial ligand, a result, which can be reversed by precipitation of Ag(I) using tetraethylammonium bromide. X-ray crystallography has also been used to characterize two Ag(I) 5,15-dipyridylporphyrinato tin(IV)complexes. The two isoforms differ in their supramolecular organization. One structure is formed through a cofacial stack linking each porphyrin by Ag(I) coordination. The other displays a sheet-like coordination polymer structure.     

Anion and carboxylic acid binding to monotopic and ditopic amidopyridine macrocycles

Binding of inorganic anions, carboxylic acids, and tetraalkylammonium carboxylates by macrocyclic compounds of different size was studied by NMR in DMSO-d6. It has been shown that at least a 15-membered ring is necessary for successful recognition of fluoride. Larger macrocycles were shown to bind HSO4(-), H2PO4(-), Cl(-), and carboxylic acid salts. Effects of binding topicity are discussed. The 30-membered macrocycles 4 and 4m selectively bind substrates that are size- and shape-complementary: maximum binding is observed for dicarboxylic acids and dicarboxylates with four-carbon chains, and the binding constant for association of fumaric acid and 4 is ca. 5 orders of magnitude higher than that of maleic acid. The 30-membered macrocycle 4m showed selectivity toward alpha-ketocarboxylic acids. Secondary amino groups were not crucial for binding of fluoride to the macrocycles; however, they proved to be very important for selectivity and strength of carboxylic acid binding. The X-ray structure of the adduct of 4 and nitrobenzoic acid confirmed the guest H-bonding with both the amide and the secondary amino groups of the 30-membered macrocyclic host.     

Determination of acidic sites and binding toxic metal ions on cumin surface using nonideal competitive adsorption model

A fundamental study of the application of cumin biomass in the recovery of Cu and Zn metal ion uptake from food and drinks is carried out at different pH's and at fixed ionic strength. The chemical characteristics of protein in cumin seeds were investigated. Results showed that cumin contains 18.25% crude protein, which includes 18 amino acids. The main reactive groups on protein cumin are amino and carboxylic groups of dicarboxylic amino acids, leading to a pH-dependent charge. Therefore, the cumin surface is considered as a heterogeneous system. To describe protonation behavior in a heterogeneous cumin biomass (cumin/0.1 M NaNO(3)) system, acid-base titrations have been performed with conductometric and potentiometric titration. Measurement of the reactivity of cumin surface in the adsorption of Cu and Zn metal ions and determination of metal binding at different pH's were also carried out. To solve broad and ill-defined titration curves, a simplified version of nonideal competitive analysis (NICA) by Plette et al.) was applied. The results show that the sorption of the bivalent metal ions onto the whole surface of cumin could be attributed to a monodentate binding to one site mainly carboxylic-type site.     

Geometry and cooperativity effects in adenosine-carboxylic acid complexes

NMR experiments and theoretical investigations were performed on hydrogen bonded complexes of specifically 1- and 7-15N-labeled adenine nucleosides with carboxylic acids. By employing a freonic solvent of CDClF2 and CDF3, NMR spectra were acquired at temperatures as low as 123 K, where the regime of slow hydrogen bond exchange is reached and several higher-order complexes were found to coexist in solution. Unlike acetic acid, chloroacetic acid forms Watson-Crick complexes with the proton largely displaced from oxygen to the nitrogen acceptor in an ion pairing structure. Calculated geometries and chemical shifts of the proton in the hydrogen bridge favorably agree with experimentally determined values if vibrational averaging and solvent effects are taken into account. The results indicate that binding a second acidic ligand at the adenine Hoogsteen site in a ternary complex weakens the hydrogen bond to the Watson-Crick bound carboxylic acid. However, substituting a second adenine nucleobase for a carboxylic acid in the trimolecular complex leads to cooperative binding at Watson-Crick and Hoogsteen faces of adenosine.     

Efficient synthesis of trisimidazole and glutaric acid bearing porphyrins: ligands for active-site models of bacterial nitric oxide reductase

[STRUCTURE: SEE TEXT] Ligands (1) for active-site models of bacterial nitric oxide reductase (NOR) have been efficiently synthesized. These compounds (1) feature three imidazolyl moieties and one carboxylic acid residue at the FeB site, which represent the closest available synthetic model ligands of NOR active center. The stereo conformations of these ligands are established on the basis of steric effects and 1H NMR chemical shifts under the ring current effect of the porphyrin.     

Supramolecular chirogenesis in zinc porphyrins: mechanism, role of guest structure, and application for the absolute configuration determination.

The achiral syn folded (face-to-face conformation) host molecule of the ethane-bridged bis(zinc porphyrin) transforms into the corresponding chiral extended anti bis-ligated species in the presence of enantiopure amine guests. The mechanism of the supramolecular chirogenesis is based upon the screw formation in bis(zinc porphyrin), arising from steric interactions between the largest substituent at the ligand's asymmetric carbon and peripheral alkyl groups of the neighboring porphyrin ring pointing toward the covalent bridge. The screw direction is determined by the guest's (amines) absolute configuration resulting in a positive chirality induced by (S)-enantiomers due to formation of the right-handed screw, and a negative chirality produced by the left-handed screw of (R)-enantiomers. The screw magnitude is strongly dependent upon the structure of the chiral guests. The amines with bulkier substituents result in stronger CD signals and larger (1)H NMR resonance splittings of enantiotopic protons. This system possesses a high degree of chiroptical activity, which allows the differentiation of one of the smallest homologous elements of organic chemistry, that is, the methyl and ethyl groups attached to the asymmetric carbon, and additionally, which senses a remote chiral center at a position beta to the amine binding group.     

Elucidation of the binding sites of sodium dodecyl sulfate to β-lactoglobulin using hydrogen/deuterium exchange mass spectrometry combined with docking simulation

Hydrogen/deuterium exchange mass spectrometry (H/DX MS) has become a powerful tool to investigate protein-protein and protein-ligand interactions, but it is still challenging to localize the interaction regions/sites of ligands with pepsin-resistant proteins such as lipocalins. β-Lactoglobulin (BLG), a member of the lipocalin family, can bind a variety of small hydrophobic molecules including retinols, retinoic acids, and long linear fatty acids. However, whether the binding site of linear molecules locates in the external groove or internal cavity of BLG is controversial. In this study we used H/DX MS combined with docking simulation to localize the interaction sites of a tested ligand, sodium dodecyl sulfate (SDS), binding to BLG. H/DX MS results indicated that SDS can bind to both the external and the internal sites in BLG. However, neither of the sites is saturated with SDS, allowing a dynamic ligand exchange to occur between the sites at equilibrium state. Docking studies revealed that SDS forms H-bonds with Lys69 in the internal site and Lys138 and Lys141 in the external site in BLG via the sulfate group, and interacts with the hydrophobic residues valine, leucine, isoleucine and methionine within both of the sites via its hydrocarbon tail, stabilizing the BLG-SDS complex.     

Synthesis, characterization and structural investigation of the first vanadocene(IV) carboxylic acid complexes prepared from the vanadocene dichloride

Two types of vanadocene complexes with carboxylic acids have been synthesized from the aqueous solution, Cp₂V(OOCR)₂ (R=H, CCl₃ and CF₃) and Cp₂V(OOC-A-COO) (A= - and CH₂), and characterized by EPR, IR, and Raman spectroscopy and X-ray diffraction analysis. Monocarboxylic and dicarboxylic acids form monodentate and chelate complexes, respectively. Both bonding types were evidenced by X-ray diffraction analysis. Structures and EPR HFC tensors were also calculated at the DFT level. Correlation between the complex structure and HFC tensor was established. HFC tensors are characteristic for the type of bond of carboxylic acid on vanadocene fragment. It is shown that the structure of complexes can be determined by the combination of theoretical method with experimental EPR spectra.     

Triorganotin(IV) esters of 2-{[ N -(2-oxo-2H-naphthalene-1-yliden)hydrazo]}benzoic acid,instability of the cyclohexyl derivative

Three triorganotin(IV) esters of 2-{[N-(2-oxo-2H-naphthalene-1-yliden)hydrazo]}benzoic acid were prepared and studied by IR and NMR spectroscopy and X-ray crystallography for the tributyl- and triethyltin(IV)-2-{[N-(2-oxo-2H-naphthalene-1-yliden)hydrazo]}benzoates (2, 3). These compounds are monomeric in solution with four-coordinate tin. The hydrazo tautomeric forms are present in chloroform solution as well as in the solid state. The coordination geometries of tin in 2 and 3 are trigonal bipyramidal with all three carbons in equatorial positions, one carboxylic oxygen and the quinone-type oxygen from adjacent molecules are in axial positions forming centrosymmetric dimers with the ring containing 20 members. The yield of the tricyclohexyltin(IV) derivative (4) is much lower than 2 or 3, with instability towards moisture in solution. The product of the reaction with water is the bis(µ²-hydroxo)-bis{2-{[N-(2-oxo-2H-naphthalene-1-yliden)hydrazo]}benzoato}tetracyclohexylditin (4a) dimer. The tin is five-coordinate in the solid state by two cyclohexyl and two hydroxy groups, the last coordination site is occupied by a monodentate carboxy group. The dimeric form of this compound remains in chloroform solution.     

Light-harvesting macroring accommodating a tetrapodal ligand based on complementary and cooperative coordinations

A porphyrin macroring, mimicking the light-harvesting complex of photosynthetic purple bacteria, was synthesized by self-assembling trisporphyrinatoZn(II) complexes with imidazolyl substituents at both molecular terminals. Very strong complementary coordination of imidazolyl to Zn(II) afforded exclusively the cyclic trimer of trisporphyrin under dilute conditions at 27 degrees C in CHCl3/MeOH = 9/1 (v/v). 1H NMR spectra of the macroring indicate the existence of two topological isomers, one symmetric and one asymmetric. Use of three noncoordinated porphyrinatoZn(II) sites allows a tetrapodal ligand to be incorporated into the cavity of the macroring. A Job plot and the clear bending behavior on UV-vis titration indicated the formation a 1:1 complex; the heterogeneity of two topological isomers was not observed, and both isomers similarly accommodated the tetrapodal ligand. The association constant obtained by curve fitting analysis was 8 x 108 M-1 in toluene. This large association constant reflects the cooperative nature of three coordination sites.     

Magnesium tetraarylporphyrin tweezer: a CD-sensitive host for absolute configurational assignments of alpha-chiral carboxylic acids

A protocol to determine the absolute configuration of alpha-chiral carboxylic acids based on a modified circular dichroic (CD) exciton chirality method has been developed. The protocol relies on a host-guest complexation mechanism: the chiral substrates are derivatized to give bifunctional amide conjugates ("guests") that form complexes with a dimeric magnesium porphyrin host, Mg-T (T stands for "tweezer") that acts as a "receptor". The two porphyrins in the complex adopt a preferred helicity dictated by the substituents at the chiral center in accordance with their steric sizes (assigned on the basis of conformational energy A-values) and, consequently, with the absolute configuration of the substrates under investigation. This chiroptical method, verified with a variety of chiral substrates, has been demonstrated to be reliable and generally applicable, including natural products with complex structures. Molecular modeling, NMR, and FTIR experiments of selected host-guest complexes revealed the mode of ligation of the substrates to the magnesium porphyrin species and led to clarification of the structure of the complex. When oxygen functionalities were directly attached to the chiral center, the signs of the CD couplets were opposite to those predicted on the basis of steric size. NMR and molecular modeling experiments indicated that this apparent inconsistency was due to conformational characteristics of the guest molecules. The stereochemical analysis is shown to be a sensitive technique, not only for the determination of absolute configurations of substrates but also for elucidation of their solution conformations.     

Crystal structure and fungitoxicity of aquatributyltin N-phthaloylglycinate

The [nBu₃Sn(N-phthaloylglycinate)(OH₂)] compound has been prepared and characterized. The crystal structure reveals the tin atom, in each of the two molecules comprising the asymmetric unit, to exist in a distorted trigonal bipyramidal geometry in which the trigonal plane is defined by the three organic substituents and the axial sites are occupied by an oxygen atom derived from a monodentate carboxylate ligand and a coordinated water molecule. The [nBu₃Sn(N-phthaloylglycinate)(OH₂)] compound and three other triorganotin derivatives of N-phthaloyl-protected amino acids display marked toxicity against several economically important plant pathogenic fungi.     

Binding of an acetic acid ligand to adenosine: a low-temperature NMR study

Binding of an acetic acid (HAc) ligand to adenosine (A) was studied by (1)H NMR spectroscopic techniques. Using a low-melting deuterated Freon mixture as solvent, liquid-state measurements could be performed in the slow exchange regime and allowed a detailed characterization of the formed associates. Thus, at 128 K, trimolecular complexes A.HAc(2) and A(2).HAc with both Watson-Crick and Hoogsteen sites of the central adenine base occupied coexist in various amounts depending on the adenosine:acetic acid molar ratio. Whereas the carboxylic acid OH proton is located closer to the acid for all hydrogen bonds formed, a more deshielded proton at the Watson-Crick site is evidence for a stronger hydrogen bond as compared to the Hoogsteen interaction. For the binding of acetic acid to an adenosine-thymidine base pair in either a Watson-Crick or a Hoogsteen configuration, hydrogen bonds to the available adenine binding site are strengthened as compared to the corresponding hydrogen bonds in the A.HAc(2) complex.     

Mono-carboxylated diaminedichloridoplatinum(IV) complexes--selective synthesis, characterization, and cytotoxicity

(OC-6-43)-Dichlorido(N,N-dimethyl-ethane-1,2-diamine)dihydroxidoplatinum(IV) could selectively be mono-carboxylated with succinic anhydride based on the steric hindrance caused by the two methyl groups of the equatorial ligand. Subsequent esterification of the uncoordinated carboxylic acid with alcohols of different lengths (methanol, butanol, hexanol and octanol) afforded the corresponding esters. The synthesized complexes were characterized in detail by elemental analysis, ESI-MS, multinuclear ((1)H, (13)C, (15)N and (195)Pt) NMR spectroscopy and in two cases by X-ray crystallography. Cytotoxicity of novel platinum(IV) compounds was investigated in four human cancer cell lines (CH1, A549, SW480 and SK-OV-3). Remarkably, the most lipophilic complexes showed IC(50) values down to the low micromolar or even nanomolar range.     

Oxidation of alcohols by electrochemically regenerated nickel oxide hydroxide. Selective oxidation of hydroxysteroids

Primary alcohols, α,ω-diols and secondary alcohols are easily transformed into carboxylic acids, dicarboxylic acids or ketones, respectively, by heterogeneous oxidation with nickel oxide hydroxide electrochemically regenerated at a nickel hydroxyde electrode. The results are discussed in comparison to those of the nickel peroxide and chromic acid oxidation. The oxidation rate decreases with increasing steric hindrance of the alcohol, thus allowing the selective oxidation of the 3-position in hydroxysteroids.     

Cavity effect amplification in the recognition of dicarboxylic acids by initial ditopic H-bond formation followed by kinetic trapping

Di[dihydroxotin(IV)] Tr?ger's base bis-porphyrin 1, a host molecule with two internal and two external guest interaction sites, binds 相似文献   

Adenine-based receptor for dicarboxylic acids

The adenine-based fluorescent receptor 1 was designed and synthesized for the selective recognition of dicarboxylic acids in CH₃CN. The recognition takes place through the Hoogsteen binding site of adenine with concomitant PET quenching of the anthracene moiety. The carboxylic acid binding to 1 was investigated by ¹H NMR, X-ray, UV-vis, and fluorescence spectroscopic methods. The Hoogsteen (HG) cleft of receptor 1 is found to be selective for glutaric acid.