Effect of base stacking on the acid-base properties of the adenine cation radical [A*+] in solution: ESR and DFT studies

In this study, the acid-base properties of the adenine cation radical are investigated by means of experiment and theory. Adenine cation radical (A*(+)) is produced by one-electron oxidation of dAdo and of the stacked DNA-oligomer (dA)6 by Cl2*(-) in aqueous glass (7.5 M LiCl in H2O and in D2O) and investigated by ESR spectroscopy. Theoretical calculations and deuterium substitution at C8-H and N6-H in dAdo aid in our assignments of structure. We find the pKa value of A*(+) in this system to be ca. 8 at 150 K in seeming contradiction to the accepted value of < or = 1 at ambient temperature. However, upon thermal annealing to > or = 160 K, complete deprotonation of A*(+) occurs in dAdo in these glassy systems even at pH ca. 3. A*(+) found in (dA)6 at 150 K also deprotonates on thermal annealing. The stability of A*(+) at 150 K in these systems is attributed to charge delocalization between stacked bases. Theoretical calculations at various levels (DFT B3LYP/6-31G*, MPWB95, and HF-MP2) predict binding energies for the adenine stacked dimer cation radical of 12 to 16 kcal/mol. Further DFT B3LYP/6-31G* calculations predict that, in aqueous solution, monomeric A*(+) should deprotonate spontaneously (a predicted pKa of ca. -0.3 for A*(+)). However, the charge resonance stabilized dimer AA*(+) is predicted to result in a significant barrier to deprotonation and a calculated pKa of ca. 7 for the AA*(+) dimer which is 7 pH units higher than the monomer. These theoretical and experimental results suggest that A*(+) isolated in solution and A*(+) in adenine stacks have highly differing acid-base properties resulting from the stabilization induced by hole delocalization within adenine stacks.     

Molecular paramagnetic semiconductor: crystal structures and magnetic and conducting properties of the Ni(dmit)(2) salts of 6-oxoverdazyl radical cations (dmit = 1,3-dithiol-2-thione-4,5-dithiolate)

Four kinds of 1:1 and 1:3 salts of 3-[4-(trimethylammonio)phenyl]-1,5-diphenyl-6-oxoverdazyl radical cation ([1](+)) and its mono- and dimethyl derivatives ([2](+) and [3](+)) with Ni(dmit)(2) anions (dmit = 1,3-dithiol-2-thione-4,5-dithiolate) ([1](+)[Ni(dmit)(2)](-) (4), [2](+)[Ni(dmit)(2)](-) (5), [3](+)[Ni(dmit)(2)](-) (6), and [1](+)[Ni(dmit)(2)](3)(-) (7)) have been prepared, and the magnetic susceptibilities (chi(M)) have been measured between 1.8 and 300 K. The chi(M) values of salts 5 and 7 can be well reproduced by the sum of the contributions from (i). a Curie-Weiss system with a Curie constant of 0.376 (K emu)/mol and negative Weiss constants (THETAV;) of -0.4 and -1.7 K and (ii). a dimer system with strong negative exchange interactions of 2J/k(B) = -354 and -258 K, respectively. The dimer formations in Ni(dmit)(2) anions have been ascertained by the crystal structure analyses of salts 4-6. In salts 4 and 6, Ni(dmit)(2) dimer molecules are sandwiched between two verdazyl cations, indicating the formation of a linear tetramer in 4 and 6. The magnetic susceptibility data for salts 4 and 6 have been fitted to a linear tetramer model using an end exchange interaction of 2J(1)/k(B) = -600 K and a central interaction of 2J(2)/k(B) = -280 K for 4 and 2J(1)/k(B) = -30 K and 2J(2)/k(B) = -580 K for 6, respectively. The results of the temperature dependence of the g(T) value in salts 4-6 obtained by ESR measurement also support the above analyses. The 1:1 salts 4-6 are insulators. On the other hand, the conductivity of the 1:3 salt 7 at 20 degrees C was sigma = 0.10 S cm(-)(1) with an activation energy E(A) = 0.099 eV, showing the semiconductor property. Salt 7 is a new molecular paramagnetic semiconductor.     

Assessment of new meta and hybrid meta density functionals for predicting the geometry and binding energy of a challenging system: the dimer of H2S and benzene

Noncovalent interactions of a hydrogen bond donor with an aromatic pi system present a challenge for density functional theory, and most density functionals do not perform well for this kind of interaction. Here we test seven recent density functionals from our research group, along with the popular B3LYP functional, for the dimer of H 2S with benzene. The functionals considered include the four new meta and hybrid meta density functionals of the M06 suite, three slightly older hybrid meta functionals, and the B3LYP hybrid functional, and they were tested for their abilities to predict the dissociation energies of three conformations of the H 2S-benzene dimer and to reproduce the key geometric parameters of the equilibrium conformation of this dimer. All of the functionals tested except B3LYP correctly predict which of the three conformations of the dimer is the most stable. The functionals that are best able to reproduce the geometry of the equilibrium conformation of the dimer with a polarized triple-zeta basis set are M06-L, PWB6K, and MPWB1K, each having a mean unsigned relative error across the two experimentally verifiable geometric parameters of only 8%. The success of M06-L is very encouraging because it is a local functional, which reduces the cost for large simulations. The M05-2X functional yields the most accurate binding energy of a conformation of the dimer for which a binding energy calculated at the CCSD(T) level of theory is available; M05-2X gives a binding energy for the system with a difference of merely 0.02 kcal/mol from that obtained by the CCSD(T) calculation. The M06 functional performs well in both categories by yielding a good representation of the geometry of the equilibrium structure and by giving a binding energy that is only 0.19 kcal/mol different from that calculated by CCSD(T). We conclude that the new generation of density functionals should be useful for a variety of problems in biochemistry and materials where aromatic functional groups can serve as hydrogen bond acceptors.     

Constructing single-chain magnets by supramolecular π-π stacking and spin canting: a case study on manganese(III) corroles

A single‐chain magnet (SCM) was constructed from manganese(III) 5,10,15‐tris(pentafluorophenyl)corrole complex [Mn^III(tpfc)] through supramolecular π–π stacking without bridging ligands. In the crystal structures, [Mn(tpfc)] molecules crystallized from different solvents, such as methanol, ethyl acetate, and ethanol, exhibit different molecular orientations and intermolecular π–π interaction or weak Mn ??? O interaction to form a supramolecular one‐dimensional motif or dimer. These three complexes show very different magnetic behaviors at low temperature. Methanol solvate 1 shows obvious frequency dependence of out‐of‐phase alternating‐current magnetic susceptibility below 2 K and a magnetization hysteresis loop with a coercive field of 400 Oe at 0.5 K. It is the first example of spin‐canted supramolecular single‐chain magnet due to weak π–π stacking interaction. By fitting the susceptibility data χ_MT (20–300 K) of 1 with the spin Hamiltonian expression ${\overrightarrow{H}}A single-chain magnet (SCM) was constructed from manganese(III) 5,10,15-tris(pentafluorophenyl)corrole complex [Mn(III) (tpfc)] through supramolecular π-π stacking without bridging ligands. In the crystal structures, [Mn(tpfc)] molecules crystallized from different solvents, such as methanol, ethyl acetate, and ethanol, exhibit different molecular orientations and intermolecular π-π interaction or weak Mn???O interaction to form a supramolecular one-dimensional motif or dimer. These three complexes show very different magnetic behaviors at low temperature. Methanol solvate 1 shows obvious frequency dependence of out-of-phase alternating-current magnetic susceptibility below 2?K and a magnetization hysteresis loop with a coercive field of 400?Oe at 0.5?K. It is the first example of spin-canted supramolecular single-chain magnet due to weak π-π stacking interaction. By fitting the susceptibility data χ(M) T (20-300?K) of 1 with the spin Hamiltonian expression H = -2J Σ(i=1)(n-1) S(Ai) S(Ai+1) + D Σ(i) S((iZ)(2)), the intrachain magnetic coupling parameter transmitted by π-π interaction of -0.31?cm(-1) and zero field splitting parameter D of -2.59?cm(-1) are obtained. Ethyl acetate solvate 2 behaves as an antiferromagnetic chain without ordering or slow magnetic relaxation down to 0.5?K. The magnetic susceptibility data χ(M) T (20-300?K) of 2 was fitted by assuming the spin Hamiltonian H = -2JΣ(i=1)(n-1) S(Ai) S(Ai+1), and the intrachain antiferromagnetic coupling constant of -0.07?cm(-1) is much weaker than that of 1. Ethanol solvate 3 with a dimer motif shows field-induced single-molecule magnet like behavior below 2.5?K. The exchange coupling constant J within the dimer propagated by π-π interaction is -0.14?cm(-1) by fitting the susceptibility data χ(M) T (20-300?K) with the spin Hamiltonian H = -2J S(A) S(B) + β(S((A)g(A)) + S((B)g(B)))H. The present studies open a new way to construct SCMs from anisotropic magnetic single-ion units through weak intermolecular interactions in the absence of bridging ligands.     

Homoleptic permethylpentalene complexes: "double metallocenes" of the first-row transition metals

The synthesis of the bimetallic permethylpentalene complexes Pn*2M2 (M = V, Cr, Mn, Co, Ni; Pn* = C8Me6) has been accomplished, and all of the complexes have been structurally characterized in the solid state by single-crystal X-ray diffraction. Pn*2V2 (1) and Pn*2Mn2 (3) show very short intermetallic distances that are consistent with metal-metal bonding, while the cobalt centers in Pn*2Co2 (4) exhibit differential bonding to each side of the Pn* ligand that is consistent with an eta(5):eta(3) formulation. The Pn* ligands in Pn*2Ni2 (5) are best described as eta(3):eta(3)-bonded to the metal centers. (1)H NMR studies indicate that all of the Pn*2M2 species exhibit D(2h) molecular symmetry in the solution phase; the temperature variation of the chemical shifts for the resonances of Pn*2Cr2 (2) indicates that the molecule has an S = 0 ground state and a thermally populated S = 1 excited state and can be successfully modeled using a Boltzmann distribution (DeltaH(o) = 14.9 kJ mol(-1) and DeltaS(o) = 26.5 J K(-1) mol(-1)). The solid-state molar magnetic susceptibility of 3 obeys the Curie-Weiss law with mu(eff) = 2.78 muB and theta = -1.0 K; the complex is best described as having an S = 1 electronic ground state over the temperature range 4-300 K. Paradoxically, attempts to isolate the "double ferrocene" equivalent, Pn*2Fe2, led only to the isolation of the permethylpentalene dimer Pn*2 (6). Solution electrochemical studies were performed on all of the organometallic compounds; 2-5 exhibit multiple quasi-reversible redox processes. Density functional theory calculations were performed on this series of complexes in order to rationalize the observed structural and spectroscopic data and provide estimates of the M-M bond orders.     

Study of the critical points in lobenzarit disodium hydrophilic matrices for controlled drug delivery

Percolation theory is a multidisciplinary theory that studies chaotic systems. It has been applied in the pharmaceutical field since 1987. The application of this theory to study the release and hydration rate of hydrophilic matrices allowed for first time to explain the changes in release and hydration kinetic of swellable matrices type controlled delivery systems. The objective of the present paper is to estimate the percolation threshold of HPMC K4M in matrices of lobenzarit disodium and to apply the obtained result to the design of hydrophilic matrices for the controlled delivery of this drug. The materials used to prepare the tablets were Lobenzarit disodium (LBD) and HPMC of viscosity grade K4M. The drug mean particle size was 42+/-0.61 mum and the polymer was sieved and 150-200 microm granulometric fraction was selected. The formulations studied were prepared with different excipient contents in the range of 10-80% w/w. Dissolution studies were carried out using the paddle method and the water uptake measurements were performed using a modified Enslin apparatus. In order to estimate the percolation threshold, the behaviour of the kinetic parameters with respect to the volumetric fraction of each component at time zero, was studied. According to percolation theory, the critical points observed in dissolution and water uptake studies are attributed to the existence of an excipient percolation threshold. This threshold was situated between (18.58 to 24.33% v/v of HPMC). Therefore, the LBD-HPMC K4M matrices with a relative HPMC particle size of should be formulated with an excipient content above 24.33% v/v of HPMC, to obtain a control of the drug release from these systems.     

基于凝胶过滤色谱的β2微球蛋白标准品单体定量检测方法

β2微球蛋白（B2M）标准品是研究透析相关淀粉样变和评估血液透析器透过效率的重要试剂。B2M易于聚集的特性导致其作为标准品的单体浓度降低,使得检测结果准确性下降。为了准确评价B2M标准品的质量,该研究建立了基于凝胶过滤色谱的B2M样品中非聚集单体的定量检测方法。使用TSKgel SuperSW2000（30 cm×4.6 mm,4 μm）凝胶筛分色谱柱,流动相为0.01 mol/L磷酸盐缓冲液（PBS,pH 7.2~7.4）,流速为0.5 mL/min,柱温为25℃。使用紫外检测器,检测波长为280 nm,外标法定量。在0.05~0.50 g/L的B2M单体质量浓度范围内线性良好,相关系数为0.9948。定量限（信噪比为10）为0.08 g/L,添加水平为0.10~0.30 g/L时,回收率为85.0%~96.7%,相对标准偏差为1.7%~3.3%。使用该方法对实验室自制重组人B2M标准品进行了质量检测,结果显示,该方法处理简单,准确度高,稳定性好,且不受溶液中B2M二聚体的干扰,适用于B2M标准品的质量分析。     

Aggregation of acetic and propionic acid in argon matrices--a matrix isolation and computational study

Monomeric acetic acid MA and propionic acid MP were isolated in argon matrices at 10K by using a pulse deposition technique. The dimerization of the monomers was induced by warming the matrices from 10 to 40 K. Under these conditions the diffusion of small trapped molecules is rapid and the dimerization could be monitored directly by IR spectroscopy. Both carboxylic acids form the symmetrical dimers B with two strong C=O...HO hydrogen bridges as the thermodynamically most stable dimers. With acetic acid a less stable dimer AA could be obtained if high concentrations of acetic acid in argon were used during the deposition of the matrix. On annealing this dimer rearranges to the more stable BA. In contrast, propionic acid does not form a corresponding less stable dimer under any experimental condition. These observations are rationalized on the basis of DFT and ab initio calculations.     

"Knock-out" analogues as a tool to quantify supramolecular processes: a theoretical study of molecular interactions in guanidiniocarbonyl pyrrole carboxylate dimers

It was recently shown experimentally that 5-(guanidiniocarbonyl)-1H-pyrrole-2-carboxylate 1, a self-complementary zwitterion, dimerizes even in water with an unprecedented high association constant of K = 170 M(-1) (J. Am. Chem. Soc. 2003, 125, 452-459). To get an insight into the importance of the various noncovalent binding interactions and of their interplay (electrostatic interactions, hydrogen binding, cooperative effects), we employ density functional theory to study the stability of several "knock-out" analogues in which single hydrogen bonds within these multiple point binding motif are switched off by replacing N-H hydrogen-donor groups with either methylene groups or an oxygen ether bridge. The influence of a highly polar solvent on the dimer stabilities is also examined. These calculations reproduce the experimental data for zwitterion 1. A comparison of 1 with the arginine dimer shows that the energy contents of the monomers also significantly influence the dimer stabilities. The analysis of the various "knock-out" analogues reveals as a main conclusion that simple models either based just on hydrogen-bond counting or on the assumption that the charge interaction by itself is the main and dominant factor fail to explain the stability of such self-assembled dimers. Our computations show that the hydrogen-bond network, the electrostatic attraction, and also their mutual interactions are responsible for the high stability of zwitterion 1.     

Remarkably efficient hydrolysis of methylparathion catalyzed by [2-(2-pyridyl)phenyl-C,N]palladium(II) complexes

The reaction of the palladium(II) acetate derivative [Pd(NwedgeC)(OAc)]2 (NwedgeC = (NC5H4-2-C6H4(C2,N) or (2-(2-pyridyl)-phenyl-C,N)) with methylparathion and water in THF leads to the formation of [Pd(NwedgeC)(mu-SP(=O)(OCH3)2)]2 (1), which reacts with PPh3 in THF to afford mononuclear complex [Pd(NwedgeC)(SP(=O)(OCH3)2)(PPh3)] (2). Compounds 1 and 2 have been characterized by 1H, 13C, and 31P NMR spectroscopy; elemental analysis; and single-crystal X-ray diffraction. When dissolved in water, 1 serves as a precatalyst for the hydrolysis of methylparathion. Kinetic and spectroscopic studies suggest that compound 1 dissociates in aqueous solution to afford cationic diaqua complex [Pd(NwedgeC)(OH2)2]+ (A). At basic pH, A is converted into its deprotonated form [Pd(NwedgeC)(OH2)(OH)] (B), which dimerizes to afford a dinuclear complex, presumably [Pd(NwedgeC)(mu-OH)]2 (C). At pH 7, the reaction is first order in substrate and first order in palladium catalyst A, with k2 = 146 +/- 9 M(-1) s(-1) at 303 K. At more-basic pH, the reaction rate increases and shows an apparent half-order dependence in palladium catalyst. These observations suggest that the active form of the catalyst at basic pH is B, whose concentration is controlled by an equilibrium with inactive C. Analysis of the data obtained at pH 9 yields a dimer formation constant K(f) = [C]/[B]2 = (6.6 +/- 5.6) x 10(6) M(-1) and a second-order rate constant k2 of (8.6 +/- 3.6) x 10(3) M(-1) s(-1) at 298 K. The pH dependence of the reaction rate as well as a spectroscopic titration indicates that the pKa of A is in the 9.5-9.7 range. Determination of the activation parameters at both pH 7 and 9 suggests that catalysis occurs via an associative mechanism whose rate-determining step involves the substitution of a water ligand of A by a molecule of methylparathion at neutral pH and nucleophilic attack of the phosphorus center of methylparathion by a hydroxide ligand of B at basic pH.     

Effect of alkali metal coordination on gas-phase chemistry of the diphosphate ion: the MH(2)P(2)O(7) (-) ions

Systematic experimental and theoretical studies on anionic phosphate species in the gas phase are almost nonexistent, even though they could provide a benchmark for enhanced comprehension of their liquid-phase chemical behavior. Gaseous MH(2)P(2)O(7) (-) ions (M=Li, Na, K, Rb, Cs), obtained from electrospray ionization of solutions containing H(4)P(2)O(7) and MOH or M salts as a source of M(+) ions were structurally assayed by collisionally activated dissociation (CAD) mass spectrometry and theoretical calculations at the B3LYP/6-31+G* level of theory. The joint application of mass spectrometric techniques and theoretical methods allowed the MH(2)P(2)O(7) (-) ions to be identified as having a structure in which the linear diphosphate anion is coordinated to the M(+) ion (I) and provides information on gas-phase isomerization processes in the [PO(3)...MH(2)PO(4)](-) clusters II and the [P(2)O(6)...M...H(2)O](-) clusters IV. Studies of gas-phase reactivity by Fourier transform ion cyclotron resonance (FTICR) and triple quadrupole (TQ) mass spectrometry revealed that the MH(2)P(2)O(7) (-) ions react with selected nucleophiles by clustering, proton transfer and addition-elimination mechanisms. The influence of the coordination of alkali metal ions on the chemical behavior of pyrophosphate is discussed.     

Electrochemical, spectral, and computational studies of metalloporphyrin dimers formed by cation complexation of crown ether cavities

The effect on the electrochemical oxidation and reduction potentials of 5,10,15,20-tetrakis(benzo-15-crown-5)porphyrin (TCP) and its metal derivatives (MTCP; M = Mg(II), VO(IV), Co(II), Ni(II), Cu(II), Zn(II), Pd(II), Ag(II)) upon potassium ion induced dimerization of the porphyrins was systematically performed in benzonitrile containing 0.1 M (TBA)ClO(4) by differential pulse voltammetry technique. The HOMO--LUMO energy level diagram constructed from the electrochemical data revealed destabilization of the HOMO level and stabilization of the LUMO level upon dimer formation while such a perturbation was larger for the HOMO level than the LUMO level. The geometry and electronic structure of a representative ZnTCP and its dimer, K(4)(ZnTCP)(2), were evaluated by the ab initio B3LYP method utilizing a mixed basis set of 3-21G(*) for Zn, K, O, and N and STO-3G for C and H. The inter-porphyrin ring distance of the dimer calculated from the optimized geometry agreed with the spectroscopically determined one, and the calculated HOMO and LUMO frontier orbitals revealed delocalization on both of the porphyrins rings. The metal-metal distances calculated from the triplet ESR spectra of the K(+) induced porphyrin dimers bearing paramagnetic metal ions in the cavity followed the trend Cu--Cu < VO--VO < Ag--Ag. However, the spectral shifts resulting from the exciton coupling of the interacting porphyrin pi-systems revealed no specific trend with respect to the metal ion in the porphyrin cavity. Additionally, linear trends in the electrochemically measured HOMO--LUMO gap and the energy corresponding to the most intense visible band of both MTCP and K(4)(MTCP)(2) were observed. A reduced HOMO--LUMO gap predicted for the dimer by B3LYP/(3-21G(), STO-3G) calculations was confirmed by the results of optical absorption and electrochemical studies.     

Kinetics of Water Exchange on the Dihydroxo-Bridged Rhodium(III) Hydrolytic Dimer

()()Conventional (18)O isotopic labeling techniques have been used to measure the water exchange rates on the Rh(III) hydrolytic dimer [(H(2)O)(4)Rh(&mgr;-OH)(2)Rh(H(2)O)(4)](4+) at I = 1.0 M for 0.08 < [H(+)] < 0.8 M and temperatures between 308.1 and 323.1 K. Two distinct pathways of water exchange into the bulk solvent were observed (k(fast) and k(slow)) which are proposed to correspond to exchange of coordinated water at positions cis and trans to bridging hydroxide groups. This proposal is supported by (17)O NMR measurements which clearly showed that the two types of water ligands exchange at different rates and that the rates of exchange matched those from the (18)O labeling data. No evidence was found for the exchange of label in the bridging OH groups in either experiment. This contrasts with findings for the Cr(III) dimer. The dependence of both k(fast) and k(slow) on [H(+)] satisfied the expression k(obs) = (k(O)[H(+)](tot) +k(OH)K(a1))/([H(+)](tot) + K(a1)) which allows for the involvement of fully protonated and monodeprotonated Rh(III) dimer. The following rates and activation parameters were determined at 298 K. (i) For fully protonated dimer: k(fast) = 1.26 x 10(-)(6) s(-)(1) (DeltaH() = 119 +/- 4 kJ mol(-)(1) and DeltaS() = 41 +/- 12 J K(-)(1) mol(-)(1)) and k(slow) = 4.86 x 10(-)(7) s(-)(1) (DeltaH() = 64 +/- 9 kJ mol(-)(1) and DeltaS() = -150 +/- 30 J K(-)(1) mol(-)(1)). (ii) For monodeprotonated dimer: k(fast) = 3.44 x 10(-)(6) s(-)(1) (DeltaH() = 146 +/- 4 kJ mol(-)(1) and DeltaS() = 140 +/- 11 J K(-)(1) mol(-)(1)) and k(slow) = 2.68 x 10(-)(6) s(-)(1) (DeltaH() = 102 +/- 3 kJ mol(-)(1) and DeltaS() = -9 +/- 11 J K(-)(1) mol(-)(1)). Deprotonation of the Rh(III) dimer was found to labilize the primary coordination sphere of the metal ions and thus increase the rate of water exchange at positions cis and trans to bridging hydroxides but not to the same extent as for the Cr(III) dimer. Activation parameters and mechanisms for ligand substitution processes on the Rh(III) dimer are discussed and compared to those for other trivalent metal ions and in particular the Cr(III) dimer.     

A comparison of the behavior of functional/basis set combinations for hydrogen-bonding in the water dimer with emphasis on basis set superposition error

We evaluate the performance of ten functionals (B3LYP, M05, M05-2X, M06, M06-2X, B2PLYP, B2PLYPD, X3LYP, B97D, and MPWB1K) in combination with 16 basis sets ranging in complexity from 6-31G(d) to aug-cc-pV5Z for the calculation of the H-bonded water dimer with the goal of defining which combinations of functionals and basis sets provide a combination of economy and accuracy for H-bonded systems. We have compared the results to the best non-density functional theory (non-DFT) molecular orbital (MO) calculations and to experimental results. Several of the smaller basis sets lead to qualitatively incorrect geometries when optimized on a normal potential energy surface (PES). This problem disappears when the optimization is performed on a counterpoise (CP) corrected PES. The calculated interaction energies (ΔEs) with the largest basis sets vary from -4.42 (B97D) to -5.19 (B2PLYPD) kcal/mol for the different functionals. Small basis sets generally predict stronger interactions than the large ones. We found that, because of error compensation, the smaller basis sets gave the best results (in comparison to experimental and high-level non-DFT MO calculations) when combined with a functional that predicts a weak interaction with the largest basis set. As many applications are complex systems and require economical calculations, we suggest the following functional/basis set combinations in order of increasing complexity and cost: (1) D95(d,p) with B3LYP, B97D, M06, or MPWB1k; (2) 6-311G(d,p) with B3LYP; (3) D95++(d,p) with B3LYP, B97D, or MPWB1K; (4) 6-311++G(d,p) with B3LYP or B97D; and (5) aug-cc-pVDZ with M05-2X, M06-2X, or X3LYP.     

Microcanonical modeling of the thermokinetic method

A microcanonical analysis of the thermokinetic method is performed using statistical rate calculations based on orbiting transition state theory in order to model a proton transfer process: MH(+) + B(i) --> M + B(i)H(+). The reaction efficiency is calculated as a function of the difference in zero point energy of reactants and products. Several models of reactions were investigated in order to simulate situations where the base of interest M exhibits loss of entropy upon protonation of up to approximately 40 J mol(-1) K(-1). It is shown that the standard thermokinetic method would predict correct 298 K gas phase basicities, GB(298)(M), even for polydentate molecules M, if experiments are conducted at this temperature. Proton affinity, PA(298)(M), and protonation entropy may be obtained by the thermokinetic method only in special circumstances such as, for example, experiments conducted at various temperatures.     

Identification of 7,4'-dihydroxy-5-methoxyflavylium in "Dragon's blood": to be or not to be an anthocyanin

The compound 7,4'-dihydroxy-5-methoxyflavylium (dracoflavylium) was identified as the major red colorant in samples of the resin "dragon's blood", extracted from the tree Dracaena draco. The complex network of reversible chemical reactions that dracoflavylium undergoes in aqueous solution is fully described; for the first time, all the equilibrium constants that enable a complete characterisation of the system have been obtained (K'(a)=1.6 x 10(-4), K(a1)=1.0 x 10(-4), K(a2)=3.2 x 10(-8), K(Ct1)=1.0 x 10(-7), K(Ct2)=1.3 x 10(-10)). It is concluded that the red colour is due to a stable quinoid base, A, which is the major species at pH 4-7. It is further shown that this compound does not fit the commonly accepted definitions of anthocyanidin nor 3-deoxyanthocyanidin. Similarly to synthetic flavylium salts, the natural compound 7,4'-dihydroxy-5-methoxyflavylium gives rise to several species (multistate system) reversibly interconverted by external stimuli, such as pH.     

High resolution overtone spectroscopy of the acetylene van der Waals dimer, ((12)C2H2)2

CW-cavity ring down spectroscopy was used to record in a free jet expansion the spectrum of the absorption band in ((12)C(2)H(2))(2) with origin at 6547.6 cm(-1). It is a perpendicular band and corresponds to 2CH excitation in the hat unit of the T-shaped dimer. Calibration (better than ±1 × 10(-3) cm(-1) accuracy) and ring-down time (130 μs) were improved compared to a previous contribution (Didriche et al. Mol. Phys., 2010, 108, 2158-2164). A line-by-line analysis was achieved. Three series of lines were identified involving levels with A(1)(+), E(+) and B(1)(+) ground state tunneling symmetries, confirming the spectral and symmetry analyses reported in the literature for the 1CH excitation band (Fraser et al. J. Chem. Phys., 1988, 89, 6028-6045). 164 vibration-rotation-tunneling lines were assigned in the K(a)' - K(a)' = 2 - 3, 0 - 1, 2 - 1 and 4 - 3 sub-bands and effective rigid rotor vibration-rotation constants were obtained by simultaneously fitting 1CH and 2CH lines with the same symmetry series. Perturbations affecting the K(a) stacks, in particular, are reported. The tunneling frequency in 2CH is estimated to be ν(tunn)(2CH) = 270 MHz for the K(a) = 0 stack. The rotational temperature is determined to be 23 K from relative line intensities and the lifetime of the dimer in the 2CH hat state is estimated to be 1 ns from individual line widths.     

Enhanced silver ion binding to a rigid bisarene molecular cleft with formation of nonpolar pleated sheets through non-ionic intermolecular forces

Silver ion complexation to bisarene ligands is enhanced by providing a conformationally rigid molecular cleft in the (Z)-acenaphthylene dimer 1. NMR titrations were used to determine complexation constants K for a series of ligands in tetrahydrofuran solution, with K = 4.9 M(-1) for the Z dimer 1 and 0.4 M(-1) for the E dimer 2. Higher values of K were observed in CDCl(3)/CD(3)OD 9:1 with K = 38 M(-1) for 1 and K = 4.1 M(-1) for 2. In the solid state, isolated clusters of [1 x (AgCF(3)SO(3))(2)](2) form a novel, pleated-sheet motif based on non-ionic interactions between clusters.     

Preparation and magnetic properties of Mn(hfac)(2)-complexes of 2-(5-pyrimidinyl)- and 2-(3-pyridyl)-substituted nitronyl nitroxides

Mn(hfac)(2) complexes of [2-(5-pyrimidinyl)-4,4,5,5-tetramethyl-4,5-dihydro-1H- imidazoline-1-oxyl 3-oxide] (1) and its 2-(3-pyridyl) analogue (2) were prepared. Both complexes formed similar dimer structures. However, their packing patterns were considerably different. The pyrimidine dimers were aligned to form a linear chain structure, and each dimer was weakly bound by two sets of O6-C2 short contacts. In the pyridine dimer complex, two structurally similar but independent dimers were alternatively arranged, and two dimer-dimer contacts, O6-C2 (3.13 A) and O6-C3 (3.30 A), were observed. The pyrimidine complex showed strong antiferromagnetic behavior in the high temperature region (150-300 K) and weak ferromagnetic behavior below 100 K. Two models were used to analyze these magnetic properties. One is a quintet-septet thermal equilibrium model with mean-field approximation, which can reproduce the round minimum observed at about 150 K in chi(p)T plots (J(1)/k(B) = -148 +/- 2 K with theta = +2.5 +/- 0.1 K). The other is a ferromagnetic S = 2 chain model to fit the chi(p)T values in the lower temperature region (J(S=2)/k(B) = +0.31 +/- 0.01 K). The pyridine complex showed antiferromagnetic interactions both in the high and low temperature regions. The magnetic behavior was similarly analyzed with the following parameters: J(1)/k(B) = -140 +/- 2 K with theta = -0.55 +/- 0.05 K, and J(S=2)/k(B) = -0.075 +/- 0.003 K. The ligand-ligand interactions for both of the complexes were theoretically analyzed. The calculated results agreed well with the experiments. The stronger antiferromagnetic behavior observed in both the complexes at high temperatures was attributed to the magnetic interaction between the Mn(II) and the coordinating nitroxide oxygen atom. The weaker ferromagnetic interaction, J(S=2)/k(B) = +0.31 +/- 0.01 K, in the pyrimidine complex was attributed to the coulombic O6-C2 contact. Antiferromagnetic interaction J(S=2)/k(B) = -0.075 +/- 0.003 K in the pyridine complex was attributed to the O6-C3 contact.     

Synthesis and characterization of sulfide, sulfide-sulfonium, and bissulfide derivatives of [B12H12]2-. Additivity of Me2S and MeS- substituent effects in 11B NMR spectra of disubstituted icosahedral boron clusters

The 1,2-, 1,7-, and 1,12-isomers of (Me2S)2B12H10 (O, M, and P) react with potassium phthalimide in DMF or EtSNa in CH3CN/EtOH upon reflux producing the corresponding isomers of [(MeS)(Me2S)B12H10]- (O1-, M1-, P1-). If excess of either nucleophile is used, [Me2SB12H11]- (1) and O, M, P can be converted into dianions [MeSB12H11]2- (2) and [(MeS)2B12H10]2- (O2-, M2-, P2-). The use of EtSNa is recommended since it facilitates the isolation of products compared to the potassium phthalimide method. When 1 or O, M, P are treated with an excess of an alkali metal (Na, K) in liquid ammonia at -40 degrees C, sulfide 2 or bissulfide dianions O2-, M2-, P2- are obtained cleanly and almost instantly. While both the nucleophilic substitution and alkali metal reduction methods are useful for the synthesis of dianions 2, O2-, M2-, and P2-, only the former method is suitable for the synthesis of the sulfide-sulfonium anions O1-, M1-, P1-. The analysis of the 11B NMR spectra of 1, O, M, P and anions derived from them demonstrated that the spectra of the disubstituted species can be predicted qualitatively, keeping in mind the simple substituent effects obtained from the spectra of monosubstituted anions 1 and 2. Some evidence is found for small partial double bond character of the B-SMe bonds in anions. [MePPh3]+ salts of [MeSB12H11]2- (2) and [1-(MeS)-7-(Me2S)B12H10]- (M1-) are structurally characterized by single-crystal X-ray diffraction analysis. Crystal data: [MePPh3]2[MeSB12H11], P2(1) (No. 4), a = 9.243(1) A, b = 18.272(1) A, c = 12.548(1) A, beta = 103.17(1) degrees, Z = 2; [MePPh3][1-(MeS)-7-(Me2S)B12H10], P1 (No. 2), a = 9.278(2) A, b = 12.003(5) A, c = 14.819(7) A, alpha = 112.18(4) degrees, beta = 105.61(3) degrees, gamma = 92.91(3) degrees, Z = 2.