Comparison of different mass spectrometry techniques in the measurement of L‐[ring‐13C6]phenylalanine incorporation into mixed muscle proteins

Precise measurement of low enrichment of stable isotope labeled amino‐acid tracers in tissue samples is a prerequisite in measuring tissue protein synthesis rates. The challenge of this analysis is augmented when small sample size is a critical factor. Muscle samples from human participants following an 8 h intravenous infusion of L‐[ring‐¹³C₆]phenylalanine and a bolus dose of L‐[ring‐¹³C₆]phenylalanine in a mouse were utilized. Liquid chromatography tandem mass spectrometry (LC/MS/MS), gas chromatography (GC) MS/MS and GC/MS were compared to the GC‐combustion‐isotope ratio MS (GC/C/IRMS), to measure mixed muscle protein enrichment of [ring‐¹³C₆]phenylalanine enrichment. The sample isotope enrichment ranged from 0.0091 to 0.1312 molar percent excess. As compared with GC/C/IRMS, LC/MS/MS, GC/MS/MS and GC/MS showed coefficients of determination of R² = 0.9962 and R² = 0.9942, and 0.9217 respectively. However, the precision of measurements (coefficients of variation) for intra‐assay are 13.0%, 1.7%, 6.3% and 13.5% and for inter‐assay are 9.2%, 3.2%, 10.2% and 25% for GC/C/IRMS, LC/MS/MS, GC/MS/MS and GC/MS, respectively. The muscle sample sizes required to obtain these results were 8 µg, 0.8 µg, 3 µg and 3 µg for GC/C/IRMS, LC/MS/MS, GC/MS/MS and GC/MS, respectively. We conclude that LC/MS/MS is optimally suited for precise measurements of L‐[ring‐¹³C₆]phenylalanine tracer enrichment in low abundance and in small quantity samples. Copyright © 2013 John Wiley & Sons, Ltd.     

Nicotine,acetanilide and urea multi‐level 2H‐, 13C‐ and 15N‐abundance reference materials for continuous‐flow isotope ratio mass spectrometry

Accurate determinations of stable isotope ratios require a calibration using at least two reference materials with different isotopic compositions to anchor the isotopic scale and compensate for differences in machine slope. Ideally, the δ values of these reference materials should bracket the isotopic range of samples with unknown δ values. While the practice of analyzing two isotopically distinct reference materials is common for water (VSMOW‐SLAP) and carbonates (NBS 19 and L‐SVEC), the lack of widely available organic reference materials with distinct isotopic composition has hindered the practice when analyzing organic materials by elemental analysis/isotope ratio mass spectrometry (EA‐IRMS). At present only L‐glutamic acids USGS40 and USGS41 satisfy these requirements for δ¹³C and δ¹⁵N, with the limitation that L‐glutamic acid is not suitable for analysis by gas chromatography (GC). We describe the development and quality testing of (i) four nicotine laboratory reference materials for on‐line (i.e. continuous flow) hydrogen reductive gas chromatography‐isotope ratio mass‐spectrometry (GC‐IRMS), (ii) five nicotines for oxidative C, N gas chromatography‐combustion‐isotope ratio mass‐spectrometry (GC‐C‐IRMS, or GC‐IRMS), and (iii) also three acetanilide and three urea reference materials for on‐line oxidative EA‐IRMS for C and N. Isotopic off‐line calibration against international stable isotope measurement standards at Indiana University adhered to the ‘principle of identical treatment’. The new reference materials cover the following isotopic ranges: δ²H_nicotine ?162 to ?45‰, δ¹³C_nicotine ?30.05 to +7.72‰, δ¹⁵N_nicotine ?6.03 to +33.62‰; δ¹⁵N_acetanilide +1.18 to +40.57‰; δ¹³C_urea ?34.13 to +11.71‰, δ¹⁵N_urea +0.26 to +40.61‰ (recommended δ values refer to calibration with NBS 19, L‐SVEC, IAEA‐N‐1, and IAEA‐N‐2). Nicotines fill a gap as the first organic nitrogen stable isotope reference materials for GC‐IRMS that are available with different δ¹⁵N values. Comparative δ¹³C and δ¹⁵N on‐line EA‐IRMS data from 14 volunteering laboratories document the usefulness and reliability of acetanilides and ureas as EA‐IRMS reference materials. Published in 2009 by John Wiley & Sons, Ltd.     

Reconstructing bulk isotope ratios from compound‐specific isotope ratios

Carbon isotope analysis by bulk elemental analysis coupled with isotope ratio mass spectrometry has been the mainstay of δ¹³C analyses both at natural abundance and in tracer studies. More recently, compound‐specific isotope analysis (CSIA) has become established, whereby organic constituents are separated online by gas or liquid chromatography before oxidation and analysis of CO₂ for constituent δ¹³C. Theoretically, there should be concordance between bulk δ¹³C measurements and carbon‐weighted δ¹³C measurements of carbon‐containing constituents. To test the concordance between the bulk and CSIA, fish oil was chosen because the majority of carbon in fish oil is in the triacylglycerol form and ～95% of this carbon is amenable to CSIA in the form of fatty acids. Bulk isotope analysis was carried out on aliquots of oil extracted from 55 fish samples and δ¹³C values were obtained. Free fatty acids (FFAs) were produced from the oil samples by saponification and derivatised to fatty acid methyl esters (FAMEs) for CSIA by gas chromatography/combustion/isotope ratio mass spectrometry. A known amount of an internal standard (C15:0 FAME) was added to allow analyte quantitation. This internal standard was also isotopically calibrated in both its FFA (δ¹³C = ?34.30‰) and FAME (δ¹³C = ?34.94‰) form. This allowed reporting of FFA δ¹³C from measured FAME δ¹³C values. The bulk δ¹³C was reconstructed from CSIA data based on each FFA δ¹³C and the relative amount of CO₂ produced by each analyte. The measured bulk mean δ¹³C (SD) was ?23.75‰ (1.57‰) compared with the reconstructed bulk mean δ¹³C of ?23.76 (1.44‰) from CSIA and was not significantly different. Further analysis of the data by the Bland‐Altman method did not show particular bias in the data relative to the magnitude of the measurement. Good agreement between the methods was observed with the mean difference between methods (range) of 0.01‰ (?1.50 to 1.30). Copyright © 2010 John Wiley & Sons, Ltd.     

Carbon and hydrogen isotope fractionation of benzene during biodegradation under sulfate‐reducing conditions: a laboratory to field site approach

The microbial carbon and hydrogen isotope fractionation of benzene under sulfate‐reducing conditions was investigated within systems of increasing complexity: (i) batch laboratory microcosms, (ii) a groundwater‐percolated column system, and (iii) an aquifer transect. Recent molecular biological studies indicate that, at least in the laboratory microcosms and the column system, benzene is degraded by similar bacterial communities. Carbon and hydrogen enrichment factors (ε_C, ε_H) obtained from laboratory microcosms and from the column study varied significantly although experiments were performed under similar redox and temperature conditions. Thus, enrichment factors for only a single element could not be used to distinguish benzene degradation under sulfate‐reducing conditions from other redox conditions. In contrast, using correlation of changes of hydrogen vs. carbon isotope ratios (Λ = Δδ²H/Δδ¹³C), similar Λ‐values were derived for the benzene biodegradation under sulfate‐reducing conditions in all three experimental systems (Λ_{laboratory microcosms} = 23 ± 5, Λ_column = 28 ± 3, Λ_aquifer = 24 ± 2), showing the robustness of the two‐dimensional compound‐specific stable isotope analysis (2D‐CSIA) for elucidating distinct biodegradation pathways. Comparing carbon and hydrogen isotope fractionation data from recent studies, an overlap in Λ‐values was observed for benzene biodegradation under sulfate‐reducing (Λ = 23 ± 5 to Λ = 29 ± 3) and methanogenic (Λ = 28 ± 1 to Λ = 39 ± 5) conditions, indicating a similar initial benzene reaction mechanism for both electron‐acceptor conditions. Copyright © 2009 John Wiley & Sons, Ltd.     

Membrane permeation continuous‐flow isotope ratio mass spectrometry for on‐line carbon isotope ratio determination

Gaseous membrane permeation (MP) technologies have been combined with continuous‐flow isotope ratio mass spectrometry for on‐line δ¹³C measurements. The experimental setup of membrane permeation‐gas chromatography/combustion/isotope ratio mass spectrometry (MP‐GC/C/IRMS) quantitatively traps gas streams in membrane permeation experiments under steady‐state conditions and performs on‐line gas transfer into a GC/C/IRMS system. A commercial polydimethylsiloxane (PDMS) membrane sheet was used for the experiments. Laboratory tests using CO₂ demonstrate that the whole process does not fractionate the C isotopes of CO₂. Moreover, the δ¹³C values of CO₂ permeated on‐line give the same isotopic results as off‐line static dual‐inlet IRMS δ¹³C measurements. Formaldehyde generated from aqueous formaldehyde solutions has also been used as the feed gas for permeation experiments and on‐line δ¹³C determination. The feed‐formaldehyde δ¹³C value was pre‐determined by sampling the headspace of the thermostated aqueous formaldehyde solution. Comparison of the results obtained by headspace with those from direct aqueous formaldehyde injection confirms that the headspace sampling does not generate isotopic fractionation, but the permeated formaldehyde analyzed on‐line yields a ¹³C enrichment relative to the feed δ¹³C value, the isotopic fractionation being 1.0026 ± 0.0003. The δ¹³C values have been normalized using an adapted two‐point isotopic calibration for δ¹³C values ranging from ?42 to ?10‰. The MP‐GC/C/IRMS system allows the δ¹³C determination of formaldehyde without chemical derivatization or additional analytical imprecision. Copyright © 2009 John Wiley & Sons, Ltd.     

Amino acid δ13C analysis of hair proteins and bone collagen using liquid chromatography/isotope ratio mass spectrometry: paleodietary implications from intra‐individual comparisons

We report a novel method for the chromatographic separation and measurement of stable carbon isotope ratios (δ¹³C) of individual amino acids in hair proteins and bone collagen using the LC‐IsoLink system, which interfaces liquid chromatography (LC) with isotope ratio mass spectrometry (IRMS). This paper provides baseline separation of 15 and 13 of the 18 amino acids in bone collagen and hair proteins, respectively. We also describe an approach to analysing small hair samples for compound‐specific analysis of segmental hair sections. The LC/IRMS method is applied in a historical context by the δ¹³C analysis of hair proteins and bone collagen recovered from six individuals from Uummannaq in Greenland. The analysis of hair and bone amino acids from the same individual, compared for the first time in this study, is of importance in palaeodietary reconstruction. If hair proteins can be used as a proxy for bone collagen at the amino acid level, this validates compound‐specific isotope studies using hair as a model for palaeodietary reconstruction. Our results suggest that a small offset observed in the bulk δ¹³C values of the hair and bone samples may be attributed to two factors: (i) amino acid compositional differences between hair and bone proteins, and (ii) differential turnover rates of the tissues and the amino acid pools contributing to their synthesis. This application proposes that hair may be a useful complementary or alternative source of compound‐specific paleodietary information. Copyright © 2010 John Wiley & Sons, Ltd.     

Measuring oxygen yields of a thermal conversion/elemental analyzer‐isotope ratio mass spectrometer for organic and inorganic materials through injection of CO

The thermal conversion/elemental analyzer‐isotope ratio mass spectrometer (TC/EA‐IRMS) is widely used to measure the δ¹⁸O value of various substances. A premise for accurate δ¹⁸O measurement is that the oxygen in the sample can be converted into carbon monoxide (CO) quantitatively or at least proportionally. Therefore, a precise method to determine the oxygen yield of TC/EA‐IRMS measurements is needed. Most studies have used the CO peak area obtained from a known amount of a solid reference material (for example, benzoic acid) to calibrate the oxygen yield of the sample. Although it was assumed that the oxygen yield of the solid reference material is 100%, no direct evidence has been provided. As CO is the analyte gas for δ¹⁸O measurement by IRMS, in this study, we use a six‐port valve to inject CO gas into the TC/EA. The CO is carried to the IRMS by the He carrier gas and the CO peak area is measured by the IRMS. The CO peak area thus obtained from a known amount of the injected CO is used to calibrate the oxygen yield of the sample. The oxygen yields of commonly used organic and inorganic reference materials such as benzoic acid (C₆H₅COOH), silver phosphate (Ag₃PO₄), calcium carbonate (CaCO₃) and silicon dioxide (SiO₂) are investigated at different reactor temperatures and sample sizes. We obtained excellent linear correlation between the peak area for the injected CO and its oxygen atom amount. C₆H₅COOH has the highest oxygen yield, followed by Ag₃PO₄, CaCO₃ and SiO₂. The oxygen yields of TC/EA‐IRMS are less than 100% for both organic and inorganic substances, but the yields are relatively stable at the specified reactor temperature and for a given quantity of sample. Copyright © 2014 John Wiley & Sons, Ltd.     

Minimization of sample requirement for δ18O in benzoic acid

The measurement of the oxygen stable isotope content in organic compounds has applications in many fields, ranging from paleoclimate reconstruction to forensics. Conventional High‐Temperature Conversion (HTC) techniques require >20 µg of O for a single δ¹⁸O measurement. Here we describe a system that converts the CO produced by HTC into CO₂ via reduction within a Ni‐furnace. This CO₂ is then concentrated cryogenically, and 'focused' into the isotope ratio mass spectrometry (IRMS) source using a low‐flow He carrier gas (6–8 mL/min). We report analyses of benzoic acid (C₇H₆O₂) reference materials that yielded precise δ¹⁸O measurement down to 1.3 µg of O, suggesting that our system could be used to decrease sample requirement for δ¹⁸O by more than an order of magnitude. Copyright © 2010 John Wiley & Sons, Ltd.     

Kinetic 12C/13C isotope fractionation by invertase: evidence for a small in vitro isotope effect and comparison of two techniques for the isotopic analysis of carbohydrates

The natural ¹³C/¹²C isotope composition (δ¹³C) of plants and organic compounds within plant organs is a powerful tool to understand carbon allocation patterns and the regulation of photosynthetic or respiratory metabolism. However, many enzymatic fractionations are currently unknown, thus impeding our understanding of carbon trafficking pathways within plant cells. One of them is the ¹²C/¹³C isotope effect associated with invertases (EC 3.2.1.26) that are cornerstone enzymes for Suc metabolism and translocation in plants. Another conundrum of isotopic plant biology is the need to measure accurately the specific δ¹³C of individual carbohydrates. Here, we examined two complementary methods for measuring the δ¹³C value of sucrose, glucose and fructose, that is, off‐line high‐performance liquid chromatography (HPLC) purification followed by elemental analysis and isotope ratio mass spectrometry (EA‐IRMS) analysis, and gas chromatography‐combustion (GC‐C)‐IRMS. We also used these methods to determine the in vitro ¹²C/¹³C isotope effect associated with the yeast invertase. Our results show that, although providing more variable values than HPLC～EA‐IRMS, and being sensitive to derivatization conditions, the GC‐C‐IRMS method gives reliable results. When applied to the invertase reaction, both methods indicate that the ¹²C/¹³C isotope effect is rather small and it is not affected by the use of heavy water (D₂O). Copyright © 2009 John Wiley & Sons, Ltd.     

Single-step transesterification with simultaneous concentration and stable isotope analysis of fatty acid methyl esters by gas chromatography-combustion-isotope ratio mass spectrometry

Gas chromatography‐combustion‐isotope ratio mass spectrometry (GC‐C‐IRMS) is increasingly applied to food and metabolic studies for stable isotope analysis (δ¹³C), with the quantification of analyte concentration often obtained via a second alternative method. We describe a rapid direct transesterification of triacylglycerides (TAGs) for fatty acid methyl ester (FAME) analysis by GC‐C‐IRMS demonstrating robust simultaneous quantification of amount of analyte (mean r² = 0.99, accuracy ±2% for 37 FAMEs) and δ¹³C (±0.13‰) in a single analytical run. The maximum FAME yield and optimal δ¹³C values are obtained by derivatizing with 10% (v/v) acetyl chloride in methanol for 1 h, while lower levels of acetyl chloride and shorter reaction times skewed the δ¹³C values by as much as 0.80‰. A Bland‐Altman evaluation of the GC‐C‐IRMS measurements resulted in excellent agreement for pure oils (±0.08‰) and oils extracted from French fries (±0.49‰), demonstrating reliable simultaneous quantification of FAME concentration and δ¹³C values. Thus, we conclude that for studies requiring both the quantification of analyte and δ¹³C data, such as authentication or metabolic flux studies, GC‐C‐IRMS can be used as the sole analytical method. Copyright © 2011 John Wiley & Sons, Ltd.     

Online high‐precision δ2H and δ18O analysis in water by pyrolysis

A method for online simultaneous δ²H and δ¹⁸O analysis in water by high‐temperature conversion is presented. Water is injected by using a syringe into a high‐temperature carbon reactor and converted into H₂ and CO, which are separated by gas chromatography (GC) and carried by helium to the isotope ratio mass spectrometer for hydrogen and oxygen isotope analysis. A series of experiments was conducted to evaluate several issues such as sample size, temperature and memory effects. The δ²H and δ¹⁸O values in multiple water standards changed consistently as the reactor temperature increased from 1150 to 1480°C. The δ¹⁸O in water can be measured at a lower temperature (e.g. 1150°C) although the precision was relatively poor at temperatures <1300°C. Memory effects exist for δ²H and δ¹⁸O between two waters, and can be reduced (to <1%) with proper measures. The injection of different amounts of water may affect the isotope ratio results. For example, in contrast to small injections (100 nL or less) from small syringes (e.g. 1.2 µL), large injections (1 µL or more) from larger syringes (e.g. 10 µL) with dilution produced asymmetric peaks and shifts of isotope ratios, e.g. 4‰ for δ²H and 0.4‰ for δ¹⁸O, probably resulting from isotope fractionation during dilution via the ConFlo interface. This method can be used to analyze nanoliter samples of water (e.g. 30 nL) with good precision of 0.5‰ for δ²H and 0.1‰ for δ¹⁸O. This is important for geosciences; for instance, fluid inclusions in ancient minerals may be analyzed for δ²H and δ¹⁸O to help understand the formation environments. Copyright © 2009 John Wiley & Sons, Ltd.     

Carbon and oxygen isotope microanalysis of carbonate

Technical modification of the conventional method for the δ¹³C and δ¹⁸O analysis of 10–30 µg carbonate samples is described. The CO₂ extraction is carried out in vacuum using 105% phosphoric acid at 95°C, and the isotopic composition of CO₂ is measured in a helium flow by gas chromatography/isotope ratio mass spectrometry (GC/IRMS). The feed‐motion of samples to the reaction vessel provides sequential dropping of only the samples (without the sample holder) into the acid, preventing the contamination of acid and allowing us to use the same acid to carry out very large numbers of analyses. The high accuracy and high reproducibility of the δ¹³C and δ¹⁸O analyses were demonstrated by measurements of international standards and comparison of results obtained by our method and by the conventional method. Our method allows us to analyze 10 µg of the carbonate with a standard deviation of ±0.05‰ for δ¹³C and δ¹⁸O. The method has been used successfully for the analyses of the oxygen and carbon isotopic composition of the planktonic and benthic foraminifera in detailed palaeotemperature reconstructions of the Okhotsk Sea. Copyright © 2009 John Wiley & Sons, Ltd.     

Methods and limitations of ‘clumped’ CO2 isotope (Δ47) analysis by gas‐source isotope ratio mass spectrometry

The geochemistry of multiply substituted isotopologues (‘clumped‐isotope’ geochemistry) examines the abundances in natural materials of molecules, formula units or moieties that contain more than one rare isotope (e.g. ¹³C¹⁸O¹⁶O, ¹⁸O¹⁸O, ¹⁵N₂, ¹³C¹⁸O¹⁶O₂^2?). Such species form the basis of carbonate clumped‐isotope thermometry and undergo distinctive fractionations during a variety of natural processes, but initial reports have provided few details of their analysis. In this study, we present detailed data and arguments regarding the theoretical and practical limits of precision, methods of standardization, instrument linearity and related issues for clumped‐isotope analysis by dual‐inlet gas‐source isotope ratio mass spectrometry (IRMS). We demonstrate long‐term stability and subtenth per mil precision in 47/44 ratios for counting systems consisting of a Faraday cup registered through a 10¹² Ω resistor on three Thermo‐Finnigan 253 IRMS systems. Based on the analyses of heated CO₂ gases, which have a stochastic distribution of isotopes among possible isotopologues, we document and correct for (1) isotopic exchange among analyte CO₂ molecules and (2) subtle nonlinearity in the relationship between actual and measured 47/44 ratios. External precisions of ～0.01‰ are routinely achieved for measurements of the mass‐47 anomaly (a measure mostly of the abundance anomaly of ¹³C‐¹⁸O bonds) and follow counting statistics. The present technical limit to precision intrinsic to our methods and instrumentation is ～5 parts per million (ppm), whereas precisions of measurements of heterogeneous natural materials are more typically ～10 ppm (both 1 s.e.). These correspond to errors in carbonate clumped‐isotope thermometry of ±1.2 °C and ±2.4 °C, respectively. Copyright © 2009 John Wiley & Sons, Ltd.     

Mixed‐mode chromatography/isotope ratio mass spectrometry

Liquid chromatography coupled to molecular mass spectrometry (LC/MS) has been a standard technique since the early 1970s but liquid chromatography coupled to high‐precision isotope ratio mass spectrometry (LC/IRMS) has only been available commercially since 2004. This development has, for the first time, enabled natural abundance and low enrichment δ¹³C measurements to be applied to individual analytes in aqueous mixtures creating new opportunities for IRMS applications, particularly for the isotopic study of biological molecules. A growing number of applications have been published in a range of areas including amino acid metabolism, carbohydrates studies, quantification of cellular and plasma metabolites, dietary tracer and nucleic acid studies. There is strong potential to extend these to new compounds and complex matrices but several challenges face the development of LC/IRMS methods. To achieve accurate isotopic measurements, HPLC separations must provide baseline‐resolution between analyte peaks; however, the design of current liquid interfaces places severe restrictions on compatible flow rates and in particular mobile phase compositions. These create a significant challenge on which reports associated with LC/IRMS have not previously focused. Accordingly, this paper will address aspects of chromatography in the context of LC/IRMS, in particular focusing on mixed‐mode separations and their benefits in light of these restrictions. It aims to provide an overview of mixed‐mode stationary phases and of ways to improve high aqueous separations through manipulation of parameters such as column length, temperature and mobile phase pH. The results of several practical experiments are given using proteogenic amino acids and nucleosides both of which are of noted importance in the LC/IRMS literature. This communication aims to demonstrate that mixed‐mode stationary phases provide a flexible approach given the constraints of LC/IRMS interface design and acts as a practical guide for the development of new chromatographic methods compatible with LC/IRMS applications. Copyright © 2010 John Wiley & Sons, Ltd.     

Critical assessment of the applicability of gas chromatography‐combustion‐isotope ratio mass spectrometry to determine amino sugar dynamics in soil

Amino sugars in soils have been used as markers of microbial necromass and to determine the relative contribution of bacterial and fungal residues to soil organic matter. However, little is known about the dynamics of amino sugars in soil. This is partly because of a lack of adequate techniques to determine ‘turnover rates’ of amino sugars in soil. We conducted an incubation experiment where ¹³C‐labeled organic substrates of different quality were added to a sandy soil. The objectives were to evaluate the applicability of compound‐specific stable isotope analysis via gas chromatography‐combustion‐isotope ratio mass spectrometry (GC‐C‐IRMS) for the determination of ¹³C amino sugars and to demonstrate amino sugar dynamics in soil. We found total analytical errors between 0.8 and 2.6‰ for the δ¹³C‐values of the soil amino sugars as a result of the required δ¹³C‐corrections for isotopic alterations due to derivatization, isotopic fractionation and analytical conditions. Furthermore, the δ¹³C‐values of internal standards in samples determined via GC‐C‐IRMS deviated considerably from the δ¹³C‐values of the pure compounds determined via elemental analyzer IRMS (with a variation of 9 to 10‰ between the first and third quartile among all samples). This questions the applicability of GC‐C‐IRMS for soil amino sugar analysis. Liquid chromatography‐combustion‐IRMS (LC‐C‐IRMS) might be a promising alternative since derivatization, one of the main sources of error when using GC‐C‐IRMS, is eliminated from the procedure. The high ¹³C‐enrichment of the substrate allowed for the detection of very high ¹³C‐labels in soil amino sugars after 1 week of incubation, while no significant differences in amino sugar concentrations over time and across treatments were observed. This suggests steady‐state conditions upon substrate addition, i.e. amino sugar formation equalled amino sugar decomposition. Furthermore, higher quality substrates seemed to favor the production of fungal‐derived amino sugars. Copyright © 2009 John Wiley & Sons, Ltd.     

Determination of human muscle protein fractional synthesis rate: an evaluation of different mass spectrometry techniques and considerations for tracer choice

In the present study, different MS methods for the determination of human muscle protein fractional synthesis rate (FSR) using [ring‐¹³C₆]phenylalanine as a tracer were evaluated. Because the turnover rate of human skeletal muscle is slow, only minute quantities of the stable isotopically labeled amino acid will be incorporated within the few hours of a typical laboratory experiment. GC combustion isotope ratio MS (GC‐C‐IRMS) has thus far been considered the ‘gold’ standard for the precise measurements of these low enrichment levels. However, advances in liquid chromatography‐tandem MS (LC‐MS/MS) and GC‐tandem MS (GC‐MS/MS) have made these techniques an option for human muscle FSR measurements. Human muscle biopsies were freeze dried, cleaned, and hydrolyzed, and the amino acids derivatized using either N‐acetyl‐n‐propyl, phenylisothiocyanate, or N‐methyl‐N‐(tert‐butyldimethylsilyl)trifluoroacetamide (MTBSTFA) for GC‐C‐IRMS, LC‐MS/MS, and GC‐MS/MS analysis, respectively. A second derivative, heptafluorobutyric acid (HFBA), was also used for GC‐MS/MS analysis as an alternative for MTBSTFA. The machine reproducibility or the coefficients of variation for delta tracer‐tracee‐ratio measurements (delta tracer‐tracee‐ratio values around 0.0002) were 2.6%, 4.1%, and 10.9% for GC‐C‐IRMS, LC‐MS/MS, and GC‐MS/MS (MTBSTFA), respectively. FSR determined with LC‐MS/MS compared well with GC‐C‐IRMS and so did the GC‐MS/MS when using the HFBA derivative (linear fit Y = 1.08 ± 0.10, X + 0.0049 ± 0.0061, r = 0.89 ± 0.01, P < 0.0001). In conclusion, (1) IRMS still offers the most precise measurement of human muscle FSR, (2) LC‐MS/MS comes quite close and is a good alternative when tissue quantities are too small for GC‐C‐IRMS, and (3) If GC‐MS/MS is to be used, then the HFBA derivative should be used instead of MTBSTFA, which gave unacceptably high variability. Copyright © 2014 John Wiley & Sons, Ltd.     

Applications of stable isotope ratio mass spectrometry in cattle dung carbon cycling studies

Understanding the fate of dung carbon (C) in soils is challenging due to the ubiquitous presence of the plant‐derived organic matter (OM), the source material from which both dung‐derived OM and soil organic matter (SOM) predominantly originate. A better understanding of the fate of specific components of this substantial source of OM, and thereby its contribution to C cycling in terrestrial ecosystems, can only be achieved through the use of labelled dung treatments. In this short review, we consider analytical approaches using bulk and compound‐specific stable carbon isotope analysis that have been utilised to explore the fate of dung‐derived C in soils. Bulk stable carbon isotope analyses are now used routinely to explore OM matter cycling in soils, and have shown that up to 20% of applied dung C may be incorporated into the surface soil horizons several weeks after application, with up to 8% remaining in the soil profile after one year. However, whole soil δ¹³C values represent the average of a wide range of organic components with varying δ¹³C values and mean residence times in soils. Several stable ¹³C isotope ratio mass spectrometric methods have been developed to qualify and quantify different fractions of OM in soils and other complex matrices. In particular, thermogravimetry‐differential scanning calorimetry‐isotope ratio mass spectrometry (TG‐DSC‐IRMS) and gas chromatography‐combustion‐IRMS (GC‐C‐IRMS) analyses have been applied to determine the incorporation and turnover of polymeric plant cell wall materials from C₄ dung into C₃ grassland soils using natural abundance ¹³C isotope labelling. Both approaches showed that fluxes of C derived from polysaccharides, i.e. as cellulose or monosaccharide components, were more similar to the behaviour of bulk dung C in soil than lignin. However, lignin and its 4‐hydroxypropanoid monomers were unexpectedly dynamic in soil. These findings provide further evidence for emerging themes in biogeochemical investigations of soil OM dynamics that challenge perceived concepts of recalcitrance of C pools in soils, which may have profound implications for the assessment of the potential of agricultural soils to influence terrestrial C sinks. Copyright © 2010 John Wiley & Sons, Ltd.     

Experimental determination of a Viviparus contectus thermometry equation

Experimental measurements of the ¹⁸O/¹⁶O isotope fractionation between the biogenic aragonite of Viviparus contectus (Gastropoda) and its host freshwater were undertaken to generate a species‐specific thermometry equation. The temperature dependence of the fractionation factor and the relationship between Δδ¹⁸O (δ¹⁸O_carb. – δ¹⁸O_water) and temperature were calculated from specimens maintained under laboratory and field (collection and cage) conditions. The field specimens were grown (Somerset, UK) between August 2007 and August 2008, with water samples and temperature measurements taken monthly. Specimens grown in the laboratory experiment were maintained under constant temperatures (15°C, 20°C and 25°C) with water samples collected weekly. Application of a linear regression to the datasets indicated that the gradients of all three experiments were within experimental error of each other (±2 times the standard error); therefore, a combined (laboratory and field data) correlation could be applied. The relationship between Δδ¹⁸O (δ¹⁸O_carb. – δ¹⁸O_water) and temperature (T) for this combined dataset is given by: (T is in °C, δ¹⁸O_carb. is with respect to Vienna Pee Dee Belemnite (VPDB) and δ¹⁸O_water is with respect to Vienna Standard Mean Ocean Water (VSMOW). Quoted errors are 2 times standard error). Comparisons made with existing aragonitic thermometry equations reveal that the linear regression for the combined Viviparus contectus equation is within 2 times the standard error of previously reported aragonitic thermometry equations. This suggests there are no species‐specific vital effects for Viviparus contectus. Seasonal δ¹⁸O_carb. profiles from specimens retrieved from the field cage experiment indicate that during shell secretion the δ¹⁸O_carb. of the shell carbonate is not influenced by size, sex or whether females contained eggs or juveniles. Copyright © 2009 John Wiley & Sons, Ltd.     

Offline oxygen isotope analysis of organic compounds with high N:O

Although the advantages of online δ¹⁸O analysis of organic compounds make its broad application desirable, researchers have encountered NO⁺ isobaric interference with CO⁺ at m/z 30 (e.g. ¹⁴N¹⁶O⁺, ¹²C¹⁸O⁺) when analyzing nitrogenous substrates. If the δ¹⁸O value of inter‐laboratory standards for substrates with high N:O value could be confirmed offline, these materials could be analyzed periodically and used to evaluate δ¹⁸O data produced online for nitrogenous unknowns. To this end, we present an offline method based on modifications of the methods of Schimmelmann and Deniro (Anal. Chem. 1985; 57: 2644) and Sauer and Sternberg (Anal. Chem. 1994; 66: 2409), whereby all the N₂ from the gas products of a chlorinated pyrolysis was eliminated, resulting in purified CO₂ for analysis via a dual‐inlet isotope ratio mass spectrometry system. We evaluated our method by comparing observed δ¹⁸O values with previously published or inter‐laboratory calibrated δ¹⁸O values for five nitrogen‐free working reference materials; finding isotopic agreement to within ±0.2‰ for SIGMA® cellulose, IAEA‐CH3 cellulose (C₆H₁₀O₅) and IAEA‐CH6 sucrose (C₁₂H₂₂O₁₁), and within ±1.8‰ for IAEA‐601 and IAEA‐602 benzoic acids (C₇H₆O₂). We also compared the δ¹⁸O values of IAEA‐CH3 cellulose and IAEA‐CH6 sucrose that was nitrogen‐'doped' with adenine (C₅H₅N₅), imidazole (C₃H₄N₂) and 2‐aminopyrimidine (C₄H₅N₃) with the undoped δ¹⁸O values for the same substrates; yielding isotopic agreement to within ±0.7‰. Finally, we provide an independent analysis of the δ¹⁸O value of IAEA‐600 caffeine (C₈H₁₀N₄O₂), previously characterized using online systems exclusively, and discuss the reasons for an average 1.4‰ enrichment in δ¹⁸O observed offline relative to the consensus online δ¹⁸O value. Copyright © 2010 John Wiley & Sons, Ltd.     

Laser ablation isotope ratio mass spectrometry for enhanced sensitivity and spatial resolution in stable isotope analysis

Stable isotope analysis permits the tracking of physical, chemical, and biological reactions and source materials at a wide variety of spatial scales. We present a laser ablation isotope ratio mass spectrometry (LA‐IRMS) method that enables δ¹³C measurement of solid samples at 50 µm spatial resolution. The method does not require sample pre‐treatment to physically separate spatial zones. We use laser ablation of solid samples followed by quantitative combustion of the ablated particulates to convert sample carbon into CO₂. Cryofocusing of the resulting CO₂ coupled with modulation in the carrier flow rate permits coherent peak introduction into an isotope ratio mass spectrometer, with only 65 ng carbon required per measurement. We conclusively demonstrate that the measured CO₂ is produced by combustion of laser‐ablated aerosols from the sample surface. We measured δ¹³C for a series of solid compounds using laser ablation and traditional solid sample analysis techniques. Both techniques produced consistent isotopic results but the laser ablation method required over two orders of magnitude less sample. We demonstrated that LA‐IRMS sensitivity coupled with its 50 µm spatial resolution could be used to measure δ¹³C values along a length of hair, making multiple sample measurements over distances corresponding to a single day's growth. This method will be highly valuable in cases where the δ¹³C analysis of small samples over prescribed spatial distances is required. Suitable applications include forensic analysis of hair samples, investigations of tightly woven microbial systems, and cases of surface analysis where there is a sharp delineation between different components of a sample. Copyright © 2011 John Wiley & Sons, Ltd.