Synthesis and properties of covalently linked thiaporphyrin-ferrocene conjugates

Four examples of ferrocene-thiaporphyrin conjugates in which the ferrocenyl group was covalently connected either directly at meso-position of thiaporphyrin or to meso-phenyl group of thiaporphyrin via ethyne bridge were prepared by coupling bromo- or iodo thiaporphyrin with α-ethynylferrocene under mild Pd(0) coupling conditions. NMR, absorption and electrochemical studies indicated that the thiaporphyrin and ferrocenyl units interact strongly in ethyne bridged porphyrin-ferrocene conjugates but the interaction is very weak in phenyl ethyne bridged porphyrin-ferrocene conjugates. The steady state fluorescence studies indicated that the fluorescence yields are reduced to 50% in phenyl ethyne conjugates but the fluorescence is completely quenched in ethyne bridged conjugates. The partial or complete quenching of porphyrin fluorescence in these conjugates is due to electron transfer from ferrocene unit to excited state of porphyrin sub-unit. Oxidation of ferrocene to ferrocenium ion with an oxidizing agent in ethyne bridged conjugates resulted in a recovery of porphyrin fluorescence.     

Fluorescence properties of fluorescein, tetramethylrhodamine and Texas Red linked to a DNA aptamer

We report the picosecond time-scale fluorescence dynamics of a dye-labeled DNA oligonucleotide or "aptamer" designed to bind specifically to Immunoglobulin E. Comparison of the photophysics of Texas Red (TR), fluorescein and 5'-carboxytetramethylrhodamine (TAMRA)-labeled aptamers reveals surprising differences with significant implications for measurements of oligonucleotide structure and dynamics. The fluorescence decay of the TR-aptamer is a simple single exponential with a weak temperature dependence. The fluorescence decay of the fluorescein-aptamer (fl-aptamer) is pH dependent and displays a complex temperature dependence with significant changes on melting of the aptamer tertiary structure. Despite its similarities to TR, TAMRA is strongly quenched when conjugated to the aptamer and displays complex fluorescence kinetics best described by a distributed rate model. Using the maximum entropy method, we have discovered two highly temperature-dependent fluorescence lifetimes for the TAMRA-aptamer. One of these lifetimes is similar to that of free TAMRA and displays the same temperature dependence. The other lifetime is quenched and displays a temperature dependence characteristic of a charge transfer reaction. These data set TR apart as an attractive alternative to TAMRA and fluorescein for studies such as fluorescence polarization and fluorescence resonance energy transfer, where environmental sensitivity of the probe is not desired.     

Single molecule fluorescence fluctuations of the cyanine dyes linked covalently to DNA

The intersystem crossing and isomerization dynamics of free-Cy3, Cy3-ssDNA, free-Cy5 and Cy5-ssDNA are obtained through simple analysis of rapid on/off blinking from single molecule fluorescence intensity time-traces and the fluorescence correlation spectroscopy (FCS). The on- and off-times observed in fluorescence time traces of single cyanine dyes are due to the formation of the triplet state and isomerization, where both the interaction with DNA and long central polymethine chain of cyanine dyes increase the barriers of isomerization, leading to long off-time. The results indicate that the single molecule fluorescence fluctuation together with the resulting second autocorrelation analysis are powerful methods for determining the triplet state and isomerization dynamics, which could be the simple techniques and complementary to other spectroscopic techniques, such as fluorescence decay measurement and laser flash photolysis to study the photophysical processes of complex molecules. Supported by the National Natural Science Foundation of China (Grant Nos. 20773139, 20833008 & 20825314), and State Key Project for Fundamental Research (Grant Nos. 2006CB806000 & 2007CB815200)     

Structural and optical properties of DNA layers covalently attached to diamond surfaces

Label-free detection of DNA molecules on chemically vapor-deposited diamond surfaces is achieved with spectroscopic ellipsometry in the infrared and vacuum ultraviolet range. This nondestructive method has the potential to yield information on the average orientation of single as well as double-stranded DNA molecules, without restricting the strand length to the persistence length. The orientational analysis based on electronic excitations in combination with information from layer thicknesses provides a deeper understanding of biological layers on diamond. The pi-pi* transition dipole moments, corresponding to a transition at 4.74 eV, originate from the individual bases. They are in a plane perpendicular to the DNA backbone with an associated n-pi* transition at 4.47 eV. For 8-36 bases of single- and double-stranded DNA covalently attached to ultra-nanocrystalline diamond, the ratio between in- and out-of-plane components in the best fit simulations to the ellipsometric spectra yields an average tilt angle of the DNA backbone with respect to the surface plane ranging from 45 degrees to 52 degrees . We comment on the physical meaning of the calculated tilt angles. Additional information is gathered from atomic force microscopy, fluorescence imaging, and wetting experiments. The results reported here are of value in understanding and optimizing the performance of the electronic readout of a diamond-based label-free DNA hybridization sensor.     

Model of the iron hydrogenase active site covalently linked to a ruthenium photosensitizer: synthesis and photophysical properties

A model of the iron hydrogenase active site with the structure [(mu-ADT)Fe2(CO)6] (ADT = azadithiolate (S-CH2-NR-CH2-S), (2: R = 4-bromophenyl, 3: R = 4-iodophenyl)) has been assembled and covalently linked to a [Ru(terpy)2]2+ photosensitizer. This trinuclear complex 1 represents one synthetic step toward the realization of our concept of light-driven proton reduction. A rigid phenylacetylene tether has been incorporated as the linking unit in 1 in order to prolong the lifetime of the otherwise short-lived [Ru(terpy)2]2+ excited state. The success of this strategy is demonstrated by comparison of the photophysical properties of 1 and of two related ruthenium complexes bearing acetylenic terpyridine ligands, with those of [Ru(terpy)2]2+. IR and electrochemical studies reveal that the nitrogen heteroatom of the ADT bridge has a marked influence on the electronic properties of the [Fe2(CO)6] core. Using the Rehm-Weller equation, the driving force for an electron transfer from the photoexcited *[Ru(terpy)2]2+ to the diiron site in 1 was calculated to be uphill by 0.59 eV. During the construction of the trinuclear complex 1, n-propylamine has been identified as a decarbonylation agent on the [(mu-ADT)Fe2(CO)6] portion of the supermolecule. Following this procedure, the first azadithiolate-bridged dinuclear iron complex coordinated by a phosphine ligand [(mu-ADT)Fe2(CO)5PPh3] (4, R = 4-bromophenyl) was synthesized.     

Deactivation of excited states of kynurenine covalently linked to nitroxides

Due to ability of stable nitroxides to interact with free radicals, they are used as antioxidants for therapeutic and research goals in biology and medicine. A modern trend in medical chemistry is the design of multifunctional molecules such as UV absorbers covalently bound to nitroxides, which provides both UV protection and antioxidant properties combined in the same molecule. In the present work, we report the synthesis of conjugates of a natural UV filter kynurenine (KN) with nitroxides (KN‐RNO^• conjugates) and the study of their photochemical properties in aqueous and methanol solutions. Due to the spin‐exchange interaction between KN and nitroxide moieties, the triplet lifetimes in conjugates are much shorter than in KN molecule, but the triplet quantum yields are significantly higher. The reaction of intramolecular electron transfer between photoexcited KN and nitroxide moieties is the main factor determining the quantum yield of KN‐RNO^• conjugates photodecomposition. Consequently, KN‐RNO^• conjugates in aqueous solution are photochemically less stable than the parent KN molecule. Nevertheless, the photostability of KN‐RNO^• conjugates is much higher than that of cinnamates which are widely used as UV absorbers in modern sunscreen formulations. Thus, the combination of the endogenous chromophore KN with nitroxides is very promising for medical applications.     

Synthesis and photophysics of a linear non-covalently linked porphyrin-fullerene dyad

The synthesis and characterization of a new pyridinofullerene ligand capable of forming axially symmetric complexes with ZnTPP is reported; molecular modelling studies, 1H NMR, UV-Vis spectroscopy and fluorescence quenching data support formation of a strong complex between the new ligand and ZnTPP.     

Synthetic approaches to a variety of covalently linked porphyrin--fullerene hybrids

There is substantial interest in dyads in which C(60) is covalently linked to electron donors, such as porphyrins, which absorb light strongly in the visible region. We present here the details of the syntheses of such compounds, which can be broadly organized into categories depending upon the nature of the linker joining the two chromophores. The structural aspects of intramolecular electronic interaction that we have sought to explore have dictated the synthetic strategies employed to generate these classes of molecules. Flexible glycol linkers were used to allow close approach between the fullerene and porphyrin, facilitating through-space interactions. These linkers also allowed studies of the effects of metal cation complexation. Naphthalene and alkyne linkers were used to examine the possible effects a conjugated or aromatic linker might have on photophysical properties. Finally, steroids were used as linkers in dyads expected to possess a large distance between the two chromophores, in which only through-bond interactions between the fullerene and porphyrin should be possible.     

Geometric properties of covalently bonded DNA on single-crystalline diamond

Diamond is a promising candidate for bioapplications. Properties of hybridized DNA arrays on single-crystalline diamond are studied on a microscopic level by atomic force microscopy (AFM) in buffer solutions. Compact DNA layers in a thickness of 76 A are resolved by optimizing phase and height contrast in AFM. The height shows some long-range (30 nm) undulations of +/-5 A due to tip and DNA interactions. The axis of double helix DNA is oriented at about 36 degrees with respect to the diamond surface. DNA molecules can be removed by contact-mode AFM with forces >45 nN, indicating stronger DNA bonding than on gold substrates.     

Electrochemical Modulation of the Fluorescence of Cyanine Dye Cy5

Organic fluorescent dyes are widely used in single molecule localization microscopy, where their performances are determined by the photophysical properties. Herein, we utilized a sensitive method to modulate the fluorescence of organic dyes by external potentials using a combination of electrochemical cell and super‐resolution fluorescent microscopy. Cy5 (cyanine dye) was chosen as a model molecule considering its wide application and commercial availability. We applied different potentials on the Au electrode to change the Coulombic charge microenvironment of Cy5. When the electrode potential was adjusted negatively, Cy5 displayed a better photostability. This method is proved effective in adjusting the fluorescence of organic dyes.     

Synthesis of covalently linked porphyrin dimers and trimers

The synthesis of covalently linked porphyrin dimers and trimers is described. Mono- and dihydroxyporphyrins were synthesized by transeslerifying 5,10,15,20-tetra(4-carbomethoxy-phenyl)porphyrin with ethylene glycol. The mixture of transesterified porphyrins were separated by preparative thin layer chromatography. Metal derivatives were made of the mono- and dihydroxyporphyrins and these were reacted with the acid chloride of a monocarboxyporphyrin to yield hybrid dimers and trimers containing one melalloporphyrin and either one or two free base porphyrins. The structures and purity of the dimers and trimers were established by measuring the absorbance spectra, nmr spectra, and molecular weight by gel permeation chromatography.     

Optical response of phenantroimidazole-dyes covalently linked to a polynorbornene-backbone to acid and base

Two norbornene derivatives bearing phenantroimidazole dyes, namely endo/exo-11-(4-(1H-phenanthro[9,10-d]imidazol-2-yl)phenoxy) undecylbicyclo[2.2.1] hept-5-ene-2-carboxylat (5) and 11-(4-(1-Methyl-1H-phenanthro[9,10-d]imidazol-2-yl)phenoxy) undecylbicyclo[2.2.1]hept-5-ene-2-carboxylate (6) were synthesized. 5 and 6 were used to prepare statistical copolymers with endo,exo-bicyclo[2.2.1.]hept-2-ene-5,6-dicarboxylic acid dimethylester (7) via ring opening metathesis polymerization. The photophysical properties of the monomers and polymers and to what extent polymerization and substitution patterns influence the photophysical properties were investigated. Furthermore, the optical response upon addition of acid was investigated. The emission of monomer 5 shows a small bathochromic shift of 13 nm upon protonation while the emission of the resultant polymer poly5/7 exhibits a large red shift of 62 nm. In contrast, the according methylated monomer 6 and the resulting polymer poly6/7 gave similar absorption and emission characteristics. The differences were attributed to an increased tendency of the non-methylated dyes to interact when brought in close proximity in the polymer.     

Synthesis and photophysical properties of novel organic–inorganic hybrid materials covalently linked to a europium complex

A novel sol–gel derived hybrid material (classed as Eu-DBM-Si) covalently grafted with Eu(DBM-OH)₃·2H₂O (where DBM-OH = o-hydroxydibenzoylmethane) was prepared through the primary β-diketone ligand DBM-OH. All the synthesized ligands were characterized by ¹H NMR, elemental analyses and Fourier transform infrared spectra (FTIR). The resultant Eu-DBM-Si material exhibited good transparent and homogenous property. Compared to the Eu-DBM hybrid prepared by physically doped silicon dioxide with Eu(DBM-OH)₃·2H₂O, the Eu-DBM-Si hybrid presented more efficient ligand-to-Eu³⁺ energy transfer and a significant improvement in the measured emission quantum yield. Furthermore, the photophysical properties of these hybrid materials, such as the photoluminescence (PL) spectra, PL intensities, symmetry properties, lifetime decays, and Judd-Ofelt parameters were also investigated in detail.     

The synthesis of covalently linked tetraarylporphyrin dimers

A new and general synthesis of porphyrin dimers is described. The synthesis involves the reaction of dibromoalkanes with phenolic porphyrins, such as 5(4-hydroxyphenyl)-10,15,20-tritolylporphyrin, to form σ-bromoalkyl porphyrin ethers. The latter compounds are then reacted with a second phenolic porphyrin to give porphyrin dimers. A mixed metalloporphyrin dimer has been prepared which contains both V(IV) and Cu(II). The compounds have been examined spectroscopically. The free-base porphyrin dimers show a splitting of the intense Soret band. This is interpreted as indicative of weak singlet energy transfer between the covalently linked porphyrins.     

Preparation and properties of sorbents based on silica gel containing covalently linked fullerene C60

Sorbents containing 10–12 % fullerene C₆₀ were prepared by the reaction of C₆₀ with -aminopropylsilica gel. C₆₀-Silica gel possesses good chromatographic properties for the separation of aromatic, nitro, and heterocyclic compounds in the regimes of normal and reversed-phase HPLC.Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 814–816, April, 1996.     

Dielectrophoretic micropatterning with microparticle monolayers covalently linked to glass surfaces

Two-dimensional micropatterns of microparticles were fabricated on glass substrates with negative dielectrophoretic force, and the patterned microparticles were covalently bound on the substrate via cross-linking agents. The line and grid patterns of microparticles were prepared using the repulsive force of negative dielectrophoresis (n-DEP). The template interdigitated microband array (IDA) electrodes (width and gap 50 mum) were incorporated into the dielectrophoretic patterning cell with a fluidic channel. The microstructures on the glass substrates with amino or sulfhydryl groups were immobilized with the cross-linking agents disuccinimidyl suberate (DSS) and m-maleimidobenzoyl-N-hydroxy-succinimide ester (MBS). Diaphorase (Dp), a flavoenzyme, was selectively attached on the patterned microparticles using the maleimide groups of MBS. The enzyme activity on the patterned particles was electrochemically characterized with a scanning electrochemical microscope (SECM) in the presence of NADH and ferrocenylmethanol as a redox mediator. The SECM images proved that Dp was selectively immobilized onto the surface of microparticles to maintain its catalytic activity.     

Elaboration of covalently linked polyoxometalates with ruthenium and pyrene chromophores and characteriation of their photophysical properties

Keggin and Dawson-type polyoxometalates (POMs) decorated by organometallic [cyclometalated ruthenium(II) polypyridine complex] or organic (pyrene) chromophores were prepared by postfunctionalization of hybrid disilylated POM platforms. The connection is made in a very efficient and modular way via Sonogashira coupling reactions, which provide a rigid linkage between the POM and the photoactive centers. Electronic properties have been inferred from electrochemical and photophysical studies and reflect poor electronic interactions between both partners. The presence of the POM leads to luminescence quenching of the chromophores, which was attributed to an intramolecular electron transfer from the chromophore to the POM. The rate of this process is much faster in the POM-pyrene than in the POM-Ru system. It depends on the driving force dictated by the redox potentials of both partners but also in the case of the POM-Ru system on the presence of the metallacycle, which acts as a molecular insulator and delays the intramolecular electron transfer. In the POM-Ru system, a comparative study of the luminescence quenching showed that the electron transfer is still more important in the covalently bonded hybrids than in systems where the POM and the ruthenium complexes are assembled via electrostatic interactions.     

Synthesis and studies of covalently linked meso-furyl boron-dipyrromethene-ferrocene conjugates

Four meso-furyl BODIPY-ferrocene conjugates 1–4 in which one or more ferrocene groups were connected directly to BODIPY core or meso-furyl group were synthesized by coupling of appropriate bromo meso-furyl BODIPYs with α-ethynylferrocene under mild Pd(0) coupling conditions. The compounds were characterized by HR-MS mass, NMR, absorption, electrochemistry and fluorescence techniques. The absorption studies of compounds 1–4 showed charge transfer band in addition to BODIPY absorption bands indicating that the BODIPY and ferrocene moieties interact within the conjugates. On the other hand, the charge transfer band is absent in meso-phenyl BODIPY-ferrocene conjugate due to the orthogonal arrangement of ferrocene appended meso-phenyl group with BODIPY core which prevents the interaction between the two moieties. The electrochemical studies showed strong oxidation due to ferrocene moiety and reduction due to meso-furyl BODIPY unit. The compounds 3 and 4 which contain two and three ferrocenyl groups respectively were oxidized at the same potential with two and three electrons involved in the redox process. The compounds 1–4 are weakly fluorescent due to electron transfer from ferrocene unit to BODIPY unit. However, the fluorescence can be restored by oxidizing the ferrocene to ferrocenium ion which prevents the electron transfer between the two moieties. The computational studies support the experimental results.     

Intramolecular charge-transfer dynamics in covalently linked perylene-dimethylaniline and cyanoperylene-dimethylaniline

The excited-state dynamics of covalently linked electron donor-acceptor systems consisting of N, N-dimethylaniline (DMA) as electron donor and either perylene (Pe) or cyanoperylene (CNPe) as acceptor has been investigated in a large variety of solvents, including a room-temperature ionic liquid, by using femtosecond time-resolved fluorescence and absorption spectroscopy. The negligibly small solvent dependence of the absorption spectrum of both compounds and the strong solvatochromism of the fluorescence are interpreted by a model where optical excitation results in the population of a locally excited state (LES) and emission takes place from a charge-separated state (CSS). This interpretation is supported by the fluorescence up-conversion and the transient absorption measurements that reveal substantial spectral dynamics in polar solvents only, occurring on time scales going from a few hundreds of femtoseconds in acetonitrile to several tens of picoseconds in the ionic liquid. The early transient absorption spectra are similar to those found in nonpolar solvents and are ascribed to the LES absorption. The late spectra due to CSS absorption show bands that are red-shifted relative to those of the radical anion of the acceptor moiety by an amount that depends on solvent polarity, pointing to partial charge separation. Global analysis of the time-resolved data indicates that the charge separation dynamics in PeDMA is essentially solvent controlled, whereas that in CNPeDMA is faster than diffusive solvation, this difference being accounted for by a larger driving force for charge separation in the latter. On the other hand, the CSS lifetime of PeDMA is of the order of a few nanoseconds independently of the solvent, whereas that of CNPeDMA decreases with increasing solvent polarity from a few nanoseconds to a few hundreds of picoseconds. Comparison of these results with previously published data on the fluorescence quenching of Pe and CNPe in pure DMA shows that the charge separation and the ensuing charge recombination occur on similar time scales independently of whether these processes are intra- or intermolecular.