Design,Synthesis and SAR in 2,4,7-Trisubstituted Pyrido[3,2-d]Pyrimidine Series as Novel PI3K/mTOR Inhibitors

This work describes the synthesis, enzymatic activities on PI3K and mTOR, in silico docking and cellular activities of various uncommon 2,4,7 trisubstituted pyrido[3,2-d]pyrimidines. The series synthesized offers a chemical diversity in C-7 whereas C-2 (3-hydroxyphenyl) and C-4 groups (morpholine) remain unchanged, in order to provide a better understanding of the molecular determinants of PI3K selectivity or dual activity on PI3K and mTOR. Some C-7 substituents were shown to improve the efficiency on kinases compared to the 2,4-di-substituted pyrimidopyrimidine derivatives used as references. Six novel derivatives possess IC₅₀ values on PI3Kα between 3 and 10 nM. The compounds with the best efficiencies on PI3K and mTOR induced micromolar cytotoxicity on cancer cell lines possessing an overactivated PI3K pathway.     

Fluorescent Triazole Urea Activity‐Based Probes for the Single‐Cell Phenotypic Characterization of Staphylococcus aureus

Phenotypically distinct cellular (sub)populations are clinically relevant for the virulence and antibiotic resistance of a bacterial pathogen, but functionally different cells are usually indistinguishable from each other. Herein, we introduce fluorescent activity‐based probes as chemical tools for the single‐cell phenotypic characterization of enzyme activity levels in Staphylococcus aureus. We screened a 1,2,3‐triazole urea library to identify selective inhibitors of fluorophosphonate‐binding serine hydrolases and lipases in S. aureus and synthesized target‐selective activity‐based probes. Molecular imaging and activity‐based protein profiling studies with these probes revealed a dynamic network within this enzyme family involving compensatory regulation of specific family members and exposed single‐cell phenotypic heterogeneity. We propose the labeling of enzymatic activities by chemical probes as a generalizable method for the phenotyping of bacterial cells at the population and single‐cell level.     

Cocktails of Tb(3+) and Eu(3+) complexes: a general platform for the design of ratiometric optical probes

Fluorescent and luminescent reporters that signal molecular events of interest by modulating the ratio of peaks in their emission profile have advantages over reporters that simply modulate their emission intensity, since ratiometric measurement is concentration-independent and allows them to be effective in complex contexts, such as living cells or sensor microarrays. We herein describe a general platform for the design of ratiometric probes based on a heterometallic Tb(3+)/Eu(3+) bis-lanthanide ensemble, consisting of a mixture, or "cocktail", of otherwise identical heterometalated chelates. The chelate contains an organic photon antenna that sensitizes the Tb(3+)/Eu(3+) luminescence. The contributions of the two metals to the composite luminescence spectrum can be tuned to the same relative scale by adjusting the stoichiometry of the cocktail, allowing subtle changes in their ratio to be accurately measured. Importantly, the ratio responds to chemical and environmental changes experienced by the photon antenna, making the system an ideal platform for the design of chemical and enzymatic probes. As proofs of concept, we describe a ratiometric probe for esterase activity and a polarity-responsive ratiometric sensor.     

Intracellular effects of prodrug-like wortmannin probes

A small library of wortmannin based probes was synthesized by installing a clickable handle at C11 site for bioconjugation, and secondary amine and biotin moiety at C20 site to achieve self-activation and cancer target, respectively, to facilitate the analysis of their intracellular effects.     

Visible‐Light‐Induced Annihilation of Tumor Cells with Platinum–Porphyrin Conjugates

Despite the extensive use of porphyrins in photodynamic therapy (PDT), tetraplatinated porphyrins have so far not been studied for their anticancer properties. Herein, we report the synthesis of such novel platinum–porphyrin conjugates as well as their photophysical characterization and in vitro light‐induced anticancer properties. These conjugates showed only minor cytotoxicity in the dark, but IC₅₀ values down to 19 nM upon irradiation with light at 420 nm.These values correspond to an excellent phototoxic index (PI=IC₅₀ in the dark/IC₅₀ in light), which reached 5000 in a cisplatin‐resistant cell line. After incubation with HeLa cells, nuclear Pt concentrations were 30 times higher than with cisplatin. All of these favorable characteristics imply that tetraplatinated porphyrin complexes are worthy of exploration as novel PDT anticancer agents in vivo.     

Designing split reporter proteins for analytical tools

A current focus of biological research is to quantify and image cellular processes in living cells and animals. To detect such cellular processes, genetically-encoded reporters have been extensively used. The most common reporters include firefly luciferase, renilla luciferase, green fluorescent protein (GFP) and its variants with various spectral properties. This review describes novel design of split-GFP and luciferase reporters based on protein splicing, and highlights some potential applications with the reporters to study protein-protein interactions, protein localization, intracellular protein dynamics, and protein activity in living cells and animals.     

Hydrothermal synthesis,characterization, and thermal properties of alumino silicate azide sodalite,Na<Subscript>8</Subscript>[AlSiO<Subscript>4</Subscript>]<Subscript>6</Subscript>(N<Subscript>3</Subscript>)<Subscript>2</Subscript>

First time we report the synthesis, structural characterization and thermal behavior of an unusual N₃ ^? containing alumino-silicate sodalite mineral. Azide sodalite, Na₈[AlSiO₄]₆(N₃)₂ has been synthesized under hydrothermal conditions at 433 K in steel lined Teflon autoclave. The structural and microstructural properties of azide sodalite mineral was characterized by various methods including FT-IR, XRD, SEM, TGA, and MAS NMR. Crystal structure have been refined by Rietveld method in \(P\bar 43n\) space group, indicating that the N₃ ^? sodalite has cubic in lattice. High temperature study was carried out to see the effect of thermal expansion on cell dimension (a ^o) of azide sodalite. Thermal behavior of sodalite was also assessed by thermogravimetric method.     

Magnetic nanoparticles (Fe<Subscript>3</Subscript>O<Subscript>4</Subscript> &amp; Co<Subscript>3</Subscript>O<Subscript>4</Subscript>) and their applications in urea biosensing

Nanobiotechnology has opened a new and exciting opportunities for exploring urea biosensor based on magnetic nanoparticles (NPs) mainly Fe₃O₄ and Co₃O₄. These NPs have been extensively exploited to develop biosensors with stability, selectivity, reproducibility and fast response time. This review gives an overview of the development of urea biosensor based on Fe₃O₄ and Co₃O₄ for in vitro diagnostic applications along with significant improvements over the last few decades. Additionally, effort has been made to elaborate properties of magnetic nanoparticles (MNPs) in biosensing aspects. It also gives details of recent developments in hybrid nanobiocomposite based urea biosensor.     

Thermodynamic properties of the system MgO-B<Subscript>2</Subscript>O<Subscript>3</Subscript> melts

Vaporization processes of melts of the system MgO-B₂O₃ at 1640 K were studied by high-temperature mass spectrometry, and thermodynamic properties (activity, chemical potentials of MgO and B₂O₃, and also the corresponding excess values) were determined. Considerable negative deviations from the ideal behavior in the melts of the studied system are observed. The termodynamic properties of the system MgO-B₂O₃ can be calculated within the framework of the lattice theory of associated solutions.     

Al-doped La<Subscript>0.5</Subscript>Sr<Subscript>0.5</Subscript>MnO<Subscript>3</Subscript> as oxide anode for solid oxide fuel cells using dry C<Subscript>3</Subscript>H<Subscript>8</Subscript> fuel

Direct hydrocarbon type solid oxide fuel cells are attractive from simple gas feed process and also high energy conversion efficiency. In this study, La_0.5Sr_0.5MnO₃ (LSM55) perovskite oxide was studied as oxide anode for direct hydrocarbon type solid oxide fuel cell (SOFC). Although reasonable power density like 1 W/cm² and open circuit voltage (OCV) (1.1 V) at 1273 K was exhibited when H₂ was used as fuel, the power density as well as OCV of the cell using LSM55 for anode was significantly decreased when dry C₃H₈ was used for fuel. After power generation measurement, LSM55 phase was decomposed to MnO and La₂MnO₄. Effects of various dopants to Mn site in LSM55 were studied and it was found that partial substitution of Mn in LSM55 with other cation, especially transition metal, is effective for increasing maximum power density. In particular, reasonable high power density can be achieved on the cell using Ni-doped LSM55 for anode. On the other hand, Al substitution is effective for increasing stability against reduction and so, dopant effects of Al were studied in more details for dry C₃H₈ fuel. The power density as well as OCV increased with increasing Al content and the highest power density was achieved at x = 0.4 in La_0.5Sr_0.5Mn_1 ? x Al _x O₃. Among the examined composition, it was found that the cell using La_0.5Sr_0.5Mn_0.6Al_0.4O₃ anode shows the largest power density (0.2 W/cm²) at 1173 K and high OCV (1.01 V) against dry C₃H₈ fuel.     

TiO<Subscript>2</Subscript>/WO<Subscript>3</Subscript> photoanodes with enhanced photocatalytic activity for air treatment in a polymer electrolyte cell

The application of electrochemically enhanced photocatalysis in air treatment using a Nafion-based photoelectrochemical cell and TiO₂/WO₃ photoanodes for organic vapor photooxidation under both UV and visible light irradiation is briefly presented. In that direction, the obtained results regarding the preparation and characterization of the TiO₂/WO₃ photoanodes with enhanced photocatalytic activity are reviewed. Particular emphasis is given in the comparison of the photocatalytic behavior of bilayer TiO₂/WO₃ coatings, electrosynthesized on stainless steel mesh and powder C + mixed (WO₃ + TiO₂) photoanodes. The advantages of using a high surface area C + mixed (WO₃ + TiO₂) powder catalysts as photoanodes against their plain TiO₂ + C and WO₃ + C analogues are discussed.     

An Excimer Clamp for Measuring Damaged‐Base Excision by the DNA Repair Enzyme NTH1

Direct measurement of DNA repair enzyme activities is important both for the basic study of cellular repair pathways as well as for potential new translational applications in their associated diseases. NTH1, a major glycosylase targeting oxidized pyrimidines, prevents mutations arising from this damage, and the regulation of NTH1 activity is important in resisting oxidative stress and in suppressing tumor formation. Herein, we describe a novel molecular strategy for the direct detection of damaged DNA base excision activity by a ratiometric fluorescence change. This strategy utilizes glycosylase‐induced excimer formation of pyrenes, and modified DNA probes, incorporating two pyrene deoxynucleotides and a damaged base, enable the direct, real‐time detection of NTH1 activity in vitro and in cellular lysates. The probe design was also applied in screening for potential NTH1 inhibitors, leading to the identification of a new small‐molecule inhibitor with sub‐micromolar potency.     

La<Subscript>0.1</Subscript>Ca<Subscript>0.9</Subscript>MnO<Subscript>3</Subscript>/Co<Subscript>3</Subscript>O<Subscript>4</Subscript> for oxygen reduction and evolution reactions (ORER) in alkaline electrolyte

Non-precious metal bifunctional catalysts are of great interest for metal–air batteries, electrolysis, and regenerative fuel cell systems due to their performance and cost benefits compared to the Pt group metals (PGM). In this work, metal oxides of La_0.1Ca_0.9MnO₃ and nano Co₃O₄₇ catalyst as bifunctional catalysts were used in oxygen reduction and evolution reactions (ORER). The catalysts were characterized by X-ray diffraction (XRD), scanning electron microscopy (SEM), transmission electron microscopy (TEM), and N₂ adsorption isotherms. The electrocatalytic activity of the perovskite-type La_0.1Ca_0.9MnO₃ and Co₃O₄ catalysts both as single and mixtures of both were assessed in alkaline solutions at room temperature. Electrocatalyst activity, stability, and electrode kinetics were studied using cyclic voltammetry (CV) and rotating disk electrode (RDE). This study shows that the bifunctional performance of the mixed La_0.1Ca_0.9MnO₃ and nano Co₃O₄ was superior in comparison to either La_0.1Ca_0.9MnO₃ or nano Co₃O₄ alone for ORER_. The improved activity is due to the synergistic effect between the La_0.1Ca_0.9MnO₃ and nano Co₃O₄ structural and surface properties. This work illustrates that hybridization between these two metal oxides results in the excellent bifunctional oxygen redox activity, stability, and cyclability, leading to a cost-effective application in energy conversion and storage, albeit to the cost of higher catalyst loadings.     

Identification of novel PI3Kδ inhibitors by docking,ADMET prediction and molecular dynamics simulations

BackgroundPhosphoinositide-3-kinase Delta (PI3Kδ) plays a key role in B-cell signal transduction and inhibition of PI3Kδ is confirmed to have clinical benefit in certain types of activation of B-cell malignancies. Virtual screening techniques have been used to discover new molecules for developing novel PI3Kδ inhibitors with little side effects.MethodComputer aided drug design method were used to rapidly screen optimal PI3Kδ inhibitors from the Asinex database. Virtual screening based molecular docking was performed to find novel and potential lead compound targeting PI3Kδ, at first. Subsequently, drug likeness studies were carried out on the retrieved hits to evaluate and analyze their drug like properties such as absorption, distribution, metabolism, excretion, and toxicity (ADMET) for toxicity prediction. Three least toxic compounds were selected for the molecular dynamics (MD) simulations for 30 ns in order to validate its stability inside the active site of PI3Kδ receptor.ResultsBased on the present in silico analysis, two molecules have been identified which occupied the same binding pocket confirming the selection of active site. ASN 16296138 (Glide score: −12.175 kcal/mol, cdocker binding energy: −42.975 kcal/mol and ΔG_bind value: −90.457 kcal/mol) and BAS 00227397 (Glide score: −10.988 kcal/mol, cdocker binding energy: −39.3376 kcal/mol and ΔG_bind value: −81.953 kcal/mol) showed docking affinities comparatively much stronger than those of already reported known inhibitors against PI3Kδ. These two ligand’s behaviors also showed consistency during the simulation of protein-ligand complexes for 30000 ps respectively, which is indicative of its stability in the receptor pocket.ConclusionCompound ASN 16296138 and BAS 00227397 are potential candidates for experimental validation of biological activity against PI3Kδ in future drug discovery studies. This study smoothes the path for the development of novel leads with improved binding properties, high drug likeness, and low toxicity to humans for the treatment of cancer.     

Synthesis and Electrocatalytic Properties of Co<Subscript>3</Subscript>O<Subscript>4</Subscript> Nanocrystallites with Various Morphologies

Co₃O₄ crystallites with particle, plate-, tube-, rod- and sheet-like morphologies were successfully prepared by the calcination of the corresponding precursors synthesized via a precipitation or hydrothermal procedure. The morphologies of the precursors and Co₃O₄ nano-tubes were detected by field emission scanning electron microscopy (FE-SEM). The as-obtained Co₃O₄ samples were characterized by powder X-ray diffraction (XRD), transmission electron microscopy (TEM), thermogravimetric analysis (TGA) and special surface area measurement (BET). The electrocatalytic activity of p-nitrophenol reduction with the Co₃O₄ products decorated on a glassy carbon electrode (GCE) was tested, respectively, using cyclic voltammetry (CV) in a basic solution. The results indicated that p-nitrophenol was reduced with higher current density but almost at a constant potential on the Co₃O₄/GCE in contrast with that on a bare GCE at the same conditions. The highly catalytic activity of the as-prepared Co₃O₄ in a basic solution suggested their wide applications in environmental treatment or organic synthesis.     

Development of New Thiophene-Containing Triaryl Pyrazoline Derivatives as PI3Kγ Inhibitors

A series of new thiophene-containing triaryl pyrazoline derivatives, 3a–3t, were synthesized and evaluated regarding PI3K inhibition activity and anti-tumor potency based on a trial of introducing significant moieties, including pyrazoline and thiophene, and simplifying the parallel ring structures. Most of the tested compounds indicated potent PI3K inhibitory potency, with this series of compounds showing more potency for PI3Kγ than PI3Kα. The top hit 3s seemed more potent than the positive control LY294002 on inhibiting PI3Kγ (IC₅₀ values: 0.066 μM versus 0.777 μM) and more selective from PI3Kα (Index values: 645 versus 1.74). It could be inferred that the combination of para- and meta-, as well as the modification of the electron-donating moieties, led to the improvement in potency. The anti-proliferation inhibitory activity and the enzymatic inhibition potency indicated consistent tendencies. The top hit 3s could inhibit the phosphorylation of Akt by inhibiting PI3K through the PI3K-Akt-mTOR pathway. The molecular docking simulation indicated that the binding pattern of 3s into PI3Kγ was preferable than that of PI3Kα, with more hydrogen bond, more π-involved interactions, and fewer π-sulfur interactions. The information in this work is referable for the further development of selective inhibitors for specific isoforms of PI3K.     

Preparation of Ca<Subscript>3</Subscript>Co<Subscript>4</Subscript>O<Subscript>9</Subscript> by polyacrylamide gel processing and its thermoelectric properties

Ca₃Co₄O₉ powder was prepared by a polyacrylamide gel route in this paper. The effect of the processing on microstructure and thermoelectric properties of Ca₃Co₄O₉ ceramics via spark plasma sintering were investigated. Electrical measurement shows that the Seebeck coefficient and conductivity are 170 μV/K and 128 S/cm, respectively, at 700 °C, yielding a power factor value of 3.70 × 10⁻⁴ W m⁻¹ K⁻² at 700 °C, which is larger than that of Ca₃Co₄O₉ ceramics via solid-state reaction processing. The polyacrylamide gel processing is a fast, cheap, reproducible and easily scaled up chemical route to improve the thermoelectric properties of Ca₃Co₄O₉ ceramics by preparing the homogeneous and pure Ca₃Co₄O₉ phase.     

Probing Cellular Binding of Dendrofullerene by in‐situ Electrochemical Contact Angle Measurement

Dendrofullerene (C₆₀DF) is a novel fullerene derivative with potential and promising biomedical applications. In this work, electrochemical/contact angle behavior of C₆₀DF in the cellular system has been explored by in‐situ electrochemical contact angle measurement. This measuring system is a newly developed technique which can provide electrochemical and contact angle detection simultaneously. The electrochemical results indicate that dendrofullerene may effectively bind and permeate the tumor cell membrane and then distribute into the cancer cells. Our observations of in‐situ electrochemical contact angle measurement also illustrate that the permeation and interaction of C₆₀DF with target cancer cells may lead to some variation of the configurational structure of the relative cell membrane and thus result in the change of hydrophilic/hydrophobic properties of target cellular system. Furthermore, through confocus fluorescence microscopy study we found that, upon application of C₆₀DF, the intracellular accumulation of anticancer drug daunorubicin in leukemia K562 cells could be remarkably enhanced by C₆₀DF. Therefore fullerene derivatives were demonstrated to be a good candidate that can play an important role in improving the intracellular drug uptake in the target cancer cells.     

Dual‐Sensitized Luminescent Europium(ΙΙΙ) and Terbium(ΙΙΙ) Complexes as Bioimaging and Light‐Responsive Therapeutic Agents

Dual‐photosensitized stable Eu^ΙΙΙ and Tb^ΙΙΙ complexes, namely [Eu(dpq)(tfnb)₃] ( 1 ) and [Tb(dpq)(tfnb)₃] ( 2 ), in which dpq=dipyrido[3,2‐d:2′,3′‐f]quinoxaline and Htfnb=4,4,4‐trifluoro‐1‐(2‐napthyl)‐1,3‐butanedione, were designed as bioimaging and light‐responsive therapeutic agents. Their X‐ray structures, photophysical properties, biological interactions, photoinduced DNA damage, photocytotoxicity, and cellular uptake properties were studied. Discrete mononuclear complexes adopt an eight‐coordinated {LnN₂O₆} distorted square antiprism geometry with bidentate N,N‐donor dpq and O,O‐donor tfnb ligands. The designed probes have the advantage of dual‐sensitizing antennae (dpq, Htfnb) to modulate their desirable optical properties for cellular imaging and light‐responsive intracellular damage. The remarkable photostability, absence of inner‐sphere water (q<1), and longer excited‐state lifetimes of the complexes make them suitable as cellular‐imaging probes. The dpq ³T state is well located energetically to allow efficient energy transfer (ET) to the emissive ⁵D₀ and ⁵D₄ states of Eu^ΙΙΙ and Tb^ΙΙΙ. This leads to higher quantum yields (φ=0.15–0.20) in aqueous media and makes these compounds suitable cellular‐imaging probes. The complexes display significant binding ability toward DNA and bovine serum albumin (K≈10⁵ m ^?1). They effectively cleave supercoiled DNA to its nicked circular form at λ=365 nm through photoredox pathways. The cellular internalization studies showed cytosolic and nuclear localization. The remarkable photocytotoxicity of these probes offers a strategy towards developing photoresponsive Ln^ΙΙΙ probes as cellular‐imaging and phototherapeutic agents.     

Miniproteins as phage display-scaffolds for clinical applications

Miniproteins are currently developed as alternative, non-immunoglobin proteins for the generation of novel binding motifs. Miniproteins are rigid scaffolds that are stabilised by alpha-helices, beta-sheets and disulfide-constrained secondary structural elements. They are tolerant to multiple amino acid substitutions, which allow for the integration of a randomised affinity function into the stably folded framework. These properties classify miniprotein scaffolds as promising tools for lead structure generation using phage display technologies. Owing to their high enzymatic resistance and structural stability, miniproteins are ideal templates to display binding epitopes for medical applications in vivo. This review summarises the characteristics and the engineering of miniproteins as a novel class of scaffolds to generate of alternative binding agents using phage display screening. Moreover, recent developments for therapeutic and especially diagnostic applications of miniproteins are reviewed.