Ab initio study of the electronic and structural properties of the crystalline polyethyleneimine polymer

Polyethyleneimine is a very interesting polymer, not only for its extensive use in biological applications, but also for its crystal structure as a double-stranded helix in the anhydrous state. In order to elucidate the electronic bulk properties of the crystalline (or linear) polyethyleneimine built from ethylenediamine molecules in anhydrous conditions, we performed ab initio density functional theory calculations on water-free molecular crystal structures. The resulting polymer is a semiconductor with a small band gap: Eg = 0.40 eV.     

Ab initio study of structural and electronic properties of zigzag graphene nanoribbons on hexagonal boron nitride

Results of the study of structural and electronic properties of the 8-ZGNR/h-BN(001) heterostructure by the pseudopotential method using plane waves within density functional theory are presented. Within one approximation the features of the spin state at the Fermi level are studied along with the role of the edge and substrate effects in the opening of the energy gap in the 8-ZGNR/h-BN(001) heterostructure in both ferromagnetic and antiferromagnetic orderings. The effect of a substrate made of hexagonal boron nitride was found for the first time. It consists in the opening of the energy gap in the π electron spectrum of the 8-ZGNR/h-BN(001) heterostructure for the ferromagnetic spin ordering. It is shown that the gap was 30 meV. Contributions of the edge effects of the graphene nanoribbon and the substrate to the energy gap formation are differentiated for the first time. It is found that in the 8-ZGNR/h-BN(001) heterostructure the dominant role in the opening of the energy gap at the Fermi level is played by the edge effects. However, when the nanoribbon width decreases, e.g., to six dimmers the substrate role in the gap opening increases and amounts to 45%. Local magnetic moments of carbon atoms are estimated. It is shown that small magnetic moments are induced on boron and nitrogen atoms at the interface.     

Ab initio study of structural and electronic properties of SrTiO3 (001) oxygen-vacancy surfaces

First-principles calculations are employed to study the surface relaxation and electronic structure of the fully relaxed SrTiO(3) (001) oxygen-vacancy surfaces with both Sr and Ti terminations. In contrast to the perfect surface, the larger surface rumples and smaller interlayer distances have been found. Some in-gap Ti 3d states at about -1.13 eV below the Fermi level were observed in the Ti-terminated surface caused by oxygen vacancies. For the Sr-terminated oxygen-vacancy surface, some in-gap Ti 3d states move into the bulk midgap region to become partially occupied. These theoretical results are in agreement with the experimental data.     

Ab initio study of structural stability of Mo-S clusters and size specific stoichiometries of magic clusters

Using first-principles calculations with ultrasoft pseudopotential formalism and the generalized gradient approximation for the exchange-correlation functional, we study the stability of MonSm (n =1-6 and m ranging from n to 3n) clusters and obtain the optimal stoichiometry for each n corresponding to the magic cluster. It is found that in this size range, the lowest-energy structures favor a core of metal atoms, which is covered by sulfur. In particular, we observe that for Mo6S14 isolated clusters, a 3D structure is significantly lower in energy as compared to platelet structures found recently on Au (111) surface. The composition ratio between S and Mo in the magic clusters is less than 2 for n=3 and greater than 2 for n<3. The structural stability of the magic clusters arises from the optimization of the Mo-Mo and Mo- S bonding as well as the symmetry of the cluster. Addition of a terminal sulfur in a magic cluster generally lowers its binding energy. The presence of partially occupied d-orbitals in Mo atoms contributes to Mo-Mo bonding and for higher S concentration it leads to sulfur-sulfur bond formation. The variation in energy due to a change in the sulfur composition suggests that sulfurization of the magic clusters is generally more favorable than desulfurization.     

Ab initio study on the electronic and mechanical properties of ReB and ReC

The structural, electronic, and mechanical properties of ReB and ReC have been studied by use of the density functional theory. For each compound, six structures are considered, i.e., hexagonal WC, NiAs, wurtzite, cubic NaCl, CsCl, and zinc-blende type structures. The results indicate that for ReB and ReC, WC type structure is energetically the most stable among the considered structures, followed by NiAs type structure. ReB-WC (i.e., ReB in WC type structure) and ReB-NiAs are both thermodynamically and mechanically stable. ReC-WC and ReC-NiAs are mechanically stable and becomes thermodynamically stable above 35 and 55 GPa, respectively. The estimated hardness from shear modulus is 34 GPa for ReB-WC, 28 GPa for ReB-NiAs, 35 GPa for ReC-WC and 37 GPa for ReC-NiAs, indicating that they are potential candidates to be ultra-incompressible and hard materials.     

Ab initio calculations of structural, elastic, and electronic properties of silver nitrides

The all-electron approach implemented in the CRYSTAL06 program is used along with a pseudopotential method in the pseudo-atomic orbital basis set to study the crystal structure, elastic constants and bulk moduli, the band structure and density of states for the family of silver nitrides. Calculations are performed within density functional theory with the use of local and gradient functionals to describe exchange and correlation. For the general type of the cubic lattice, all considered compounds can be put in the following order of their relative stability: AgN (rock salt structure), AgN₂ (fluorite structure), Ag₂N (cuprite structure), and Ag₃N (anti-ReO₂). It is shown that AgN, AgN₂, and Ag₂N are metals, whereas Ag₃N is a semiconductor with a band gap of 0.25 eV. Chemical bonding in these compounds has ionic and covalent components, apart from the metal one.     

Ab initio studies of properties of small potassium clusters

We have studied the properties of various isomers of potassium clusters containing even number of atoms ranging from 2 to 20 at the ab initio level. The geometry optimization calculations of the isomers of each cluster are performed by using all-electron density functional theory with gradient corrected exchange-correlation functional. Using the optimized geometries of different isomers we investigate the evolution of binding energy, ionization potential, and static polarizability with the increasing size of the clusters. The polarizabilities are calculated by employing M?ller-Plesset perturbation theory and time-dependent density functional theory. The polarizabilities of dimer and tetramer are also calculated by employing large basis set coupled cluster theory with single and double excitations and perturbative triple excitations. The time-dependent density functional theory calculations of polarizabilities are carried out with two different exchange-correlation potentials: (i) an asymptotically correct model potential and (ii) within the local density approximation. A systematic comparison with the other available theoretical and experimental data for various properties of small potassium clusters mentioned above has been performed. These comparisons reveal that both the binding energy and the ionization potential obtained with gradient-corrected potential match quite well with the already published data. Similarly, the polarizabilities obtained with M?ller-Plesset perturbation theory and with model potential are quite close to each other and also close to experimental data.     

Ab initio study on the structural and electronic properties of Li3GaP2 compared with Li3GaN2

Structural and electronic properties of Li₃GaP₂ and Li₃GaN₂ have been investigated by the first-principles calculations within the density functional theory. The calculated lattice parameters of the two compounds are in excellent agreement with the available experimental data. Both Li₃GaP₂ and Li₃GaN₂ are direct band gap semiconductors with the band gaps of 1.26 eV and 2.37 eV, respectively. The Ga–P (Ga–N) and Li–P bonds consist of a mixture of ionic character and covalent nature, while the Li–N bond exhibits almost ionic. The bonds in the Li₃GaP₂ are shown to have stronger covalency and weaker ionicity as compared to the corresponding ones in the Li₃GaN₂.     

Ab initio study of magnetic interactions of manganese-oxide clusters

The manganese clusters have attracted much attention in relation with the oxygen evolving center (OEC) in photosystem II (PS II) system, which catalyzes the water oxidation reaction. Previously, we examined various spin-structures of Mn(II)₄O₄ model clusters, of which all of magnetic interactions are antiferromagnetic. In this study, we investigated electronic and magnetic structures of simple model clusters, Mn₄O₄(OAc)₆ and Mn₃CaO₄(OAc)₆ using spin unrestricted B3LYP (UB3LYP) method. The UB3LYP method is a standard tool for this study and has been in fact employed by many researchers. However, several peculiar features are observed for these model clusters: for instance the most stable spin state becomes the highest spin state for Mn(IV)₄O₄(OAc)₆ although this model cluster consists of superexchange type of units, Mn(IV)₂O₂ that usually favors antiferromagnetic spin alignments. Implications of the comparative results are discussed in relation to the electrophilic (or radical) mechanism for the O-O bond formation in the OEC.     

Ab initio studies of structural and electronic properties of Li4Ti5O12 spinel

Structural and electronic properties of Li₄Ti₅O₁₂ spinel are studied from density functional theory based first principles calculations. Differences on these properties between delithiated state Li₄Ti₅O₁₂ and lithiated state Li₇Ti₅O₁₂ are compared. The optimized lattice constant of Li₄Ti₅O₁₂ is 8.619 Å, which is even a little larger (0.2%) than 8.604 Å of the lithiated state Li₇Ti₅O₁₂. The arrangement of the Li and Ti atoms at the 16d sites of the spinel structure is also investigated in a cubic unit cell. Large 1 × 1 × 3 supercell models are constructed and used to calculate the total energy and electronic structure. The average intercalation potential is also calculated, with metallic lithium as reference.     

Ab initio calculations of structural,electronic, and optical properties of Cu2HgSnSe4

The electronic structure of Cu₂HgSnSe₄ in stannite structure is studied by the first-principles calculations. This material is a direct band-gap compound. In addition, the dielectric function, absorption coefficient, reflectivity, and energy-loss function are studied using the density functional theory within the generalized gradient approximation. We discuss the optical transitions between the valence bands and the conduction bands in the spectra of the imaginary part of the dielectric function at length. High and wide optical absorption spectrum is obtained. There are several prominent peaks for Cu₂HgSnSe₄ in the reflectivity spectra. And a rapid decrease of reflectance corresponds to the prominent peak in the energy-loss spectrum.     

Ab initio molecular dynamics study of methanol adsorption on copper clusters

The preferential structures of small copper clusters Cun (n=2-9) and the adsorption of methanol molecules on these clusters are examined with first principles, molecular dynamics simulations. The results show that the copper clusters undergo systematic changes in bond length and bond order associated with altering their preferential structures from one-dimensional structures, to two-dimensional and three-dimensional structures. The results also indicate that low coordination number sites on the copper clusters are both the most favorable for methanol adsorption and have the greatest localization of electronic charge. The simulations predict that charge transfer between the neutral copper clusters and the incident methanol molecules is a key process by which adsorption is stabilized. Importantly, the changes in the dimensionality of the copper clusters do not significantly influence methanol adsorption.     

Ab initio theoretical calculations of the electronic excitation energies of small water clusters

A direct ab initio molecular dynamics method has been applied to a water monomer and water clusters (H(2)O)(n) (n = 1-3) to elucidate the effects of zero-point energy (ZPE) vibration on the absorption spectra of water clusters. Static ab initio calculations without ZPE showed that the first electronic transitions of (H(2)O)(n), (1)B(1)←(1)A(1), are blue-shifted as a function of cluster size (n): 7.38 eV (n = 1), 7.58 eV (n = 2) and 8.01 eV (n = 3). The inclusion of the ZPE vibration strongly affects the excitation energies of a water dimer, and a long red-tail appears in the range of 6.42-6.90 eV due to the structural flexibility of a water dimer. The ultraviolet photodissociation of water clusters and water ice surfaces is relevant to these results.     

Ab initio study of sphere-like mesogen properties

Sphere-like compound C8H17Si(OPhC12H25)3N (1) forms mesophases. In order to investigate the relationship between molecular structure and liquid crystal properties, structural studies are carried out on the model molecules of compound 1 and its substituted derivatives using ah initio calculations. The results show that the cyano or chloro substituted tribenzosilatrane compounds R1Si(OPhR2 )3N (R1 R2 = CN or Cl) have much bigger dipole moments or anisotropy of polarizability and more like sphere than the corresponding alkyl substituted compounds. Cyano or chloro substituted tribenzosilatranes would be better candidates for sphere-like meso-gens.     

不对称方酸染料的电子结构与光导性的从头算研究

用量子化学从头算法,在RHF/6-31G(d,p)水平上优化了八种不对称方酸染料的分子构型,并对它们的分子内电荷转移程度与暗衰值,光敏值和最大吸收波长的定量关系进行研究,发现不对称方酸染料的分子内电荷转移性质,是影响不对称方酸染料光导性和最大吸收波长的重要因素。     

Ab initio studies of small AlmFen clusters

The equilibrium geometrical structures of small Al_mFe_n clusters have been determined through ab initio calculation of the cluster total energy at the UB3LYP/Lanl2dz level. For dimers of iron and aluminum, the dissociation energies, the equilibrium atomic distances, and the vibrational frequencies were calculated. The agreement between calculations and experiments is reasonable. The ground stable geometrical structures of Fe₄, FeAl₃, Fe₃Al and Fe₂Al₂ clusters favor three-dimension configurations, but Al₄ tetramers are planar structures. The Al-rich tetramers are more stable than the other two composition tetramers. This is different from that of bulk alloys.     

Ab initio study of the electronic spectrum of peroxyacetyl nitrate

A theoretical study of the ground and excited states of peroxyacetyl nitrate (PAN), CH3C(O)OONO2, has been carried out using high level ab initio molecular orbital methods. The ground state geometry and vibrational frequencies are calculated using the coupled-cluster method. The vertical excitation energies for the lowest three excited states are calculated using the complete active space self-consistent field method along with the multireference internally contracted configuration interaction method. These results are compared with vertical excitation energies calculated with the coupled cluster equation of motion method. The calculation provides relevant insight into the origin of PAN absorption in the UV wavelength region from 200 to 300 nm. The nature of the electron transitions for these excited states is discussed.     

Ab initio study of the electronic structure of manganese carbide

We report electronic structure calculations on 13 states of the experimentally unknown manganese carbide (MnC) using standard multireference configuration interaction (MRCI) methods coupled with high quality basis sets. For all states considered we have constructed full potential energy curves and calculated zero point energies. The X state, correlating to ground state atoms, is of 4sigma- symmetry featuring three bonds, with a recommended dissociation energy of D0 = 70.0 kcal/mol and r(e) = 1.640 angstroms. The first and second excited states, which also correlate to ground state atoms, are of 6sigma- and 8sigma- symmetry, respectively, and lie 17.7 and 28.2 kcal/mol above the X state at the MRCI level of theory.     

Ab initio study of electronic structures of Ptn clusters (n = 2–12)

Electronic structures of a series of Pt_n clusters (n = 2–12) have been calculated by ab initio method (SCF/MP2). The result shows that compared to that at the saturated coordination site, Pt at the unsaturated coordination site has lower Pt₆₅ electron occupancies, and the relationship between the electronic structure and the cluster size has been discussed. It is found that when the number of Pt in cluster reaches 7, electronic structures become more like the metallic ones. © 1997 John Wiley & Sons, Inc. Int J Quant Chem 62 : 427–436, 1997     

Density functional study of structural and electronic properties of small bimetallic silver-nickel clusters

Theoretical study on the structure and electronic properties of small AgmNip (m + p < or = 6) clusters has been carried out in the framework of density functional theory. Structural features, cohesive energies, vertical ionization potentials, and charge transfers are evaluated for each Ag/Ni ratio. In all the AgmNip clusters, the nickel atoms are brought together, yielding a maximum of Ni-Ni bonds, and the silver atoms are located around a Ni core with a maximum of Ag-Ni bonds. The ionization potential and the highest occupied molecular orbital shape are directly related to the two- or three-dimensional character of the cluster's geometry. A very low electronic charge transfer from Ni to Ag is found, and the magnetic moment is located on Ni atoms but with a low spin polarization on silver in the Ni-rich clusters.