Structure of metal adducts of anthracyclines probed by absorption,circular dichroism and paramagnetic NMR

A structural study of metal ion adducts of a new anthracycline disaccharide (MEN 10755) was undertaken. The trivalent lanthanide ion Yb(III) was employed as paramagnetic structural probe for ¹H NMR analysis. Through a comparative spectroscopic investigation [UV–Vis absorption and circular dichroism (CD), ¹H NMR], the isomorphism between its adducts with lanthanide ions (La³⁺, Yb³⁺, Lu³⁺) and calcium (one of the most representative biological cations) was verified. Solution behavior and cation binding were also investigated by means of optical titrations. In agreement with other anthracyclines, MEN 10755 was found to dimerize in aqueous solution [estimated K_dim (pH7.6) = 7 × 10³], but not in methanol. A prevalent complex Yb³⁺–MEN 10755 (1:1) in both buffered aqueous and methanolic solutions (estimated K_compl = 2100 M ^?1) was observed. A numerical analysis of the LIR and LIS ¹H NMR literature data for a similar adduct (Yb³⁺–daunorubicin) was performed using newly developed software, PERSEUS (Paramagnetic Enhanced Relaxation and Shifts for Eliciting Ultimate Structures), and the structure of the complex was characterized, locating definitely the binding site on the O‐11, O‐12 quinone system. The components of the anisotropic part of the magnetic susceptibility tensor were also determined. Finally, a study of the time‐dependent formation of an Yb³⁺–MEN 10755 complex through ¹H NMR, UV–Vis CD and induced NIR CD was carried out. Copyright © 2002 John Wiley & Sons, Ltd.     

Interaction of angiotensin peptides and zinc metal ions probed by electrospray ionization mass spectrometry

Electrospray ionization-tandem mass spectrometry experiments were used to provide evidence regarding the sites of interactions between zinc metal ions and angiotensin peptides. The electrospray ionization mass spectra of histidine-containing human angiotensin II (Asp-Arg-Val-Tyr-Ile-His-Pro-Phe) and angiotensin I (Asp-Arg-Val-Tyr-Ile-His-Pro-Phe-His-Leu) in the presence of zinc show abundant multiply charged ions for the zinc-attached peptide [M + aZn²⁺ +(c ? 2a)H⁺]^c+, where a = 1, 2 and c is charge. From collisionally activated dissociation experiments, with both low energy (triple quadrupole mass spectrometry) and high energy collisions (linked scan at constant B/E with a double focusing instrument) of the [M + Zn]²⁺ and [M + Zn + H]³⁺ ions for angiotensin II, a [b ₆ + Zn]²⁺ species is produced as the most abundant product ion, suggesting that the zinc interaction site is in the vicinity of the His⁶ residue. Additionally, tandem mass spectra from the zinc-attached ions for angiotensin I show abundant [b ₆ + Zn]²⁺ and [b ₉ + Zn]²⁺ products, providing evidence that both His⁶ and His⁹ are involved in zinc coordination.     

Nanoscale organization of ionic liquids and their interaction with peptides probed by C NMR spectroscopy

An NMR study of 10 l-alanine- and l-valine-containing peptides was carried out in the native [C₂MIM][Cl], [C₄MIM][Cl], [C₆MIM][Cl], [C₄MIM][BF₄], [C₄MIM][PF₆], and [C₄Py][BF₄] ionic liquid media. A unique high sensitivity of the ionic liquid system to the nature of peptide and ability to tune solvent–solute interactions were observed in contrast to regular organic solvents. The l-valine peptides can be selectively dissolved in [C₄MIM][Cl] and [C₆MIM][Cl], whereas their solubility in [C₂MIM][Cl] and other ionic liquids was dramatically lower. In spite of structural similarity between the amino acids, a distinct behavior was observed for the l-alanine peptides. Solvent–solute interactions with an ionic liquid impose significant changes, and NMR spectroscopy is a useful probe for the molecular-level and nanoscale organization of the studied systems. An even/odd effect of the number of amino acids in the peptide on molecular interactions in ionic liquids was observed. Enhancement of chemical properties of peptides in ionic liquids and application of ionic liquids in the separation of peptides are the areas of practical interest in the studied systems.     

Aqueous solvation dynamics at metal oxide surfaces

Broadband transient absorption (TA) spectroscopy, three-pulse photon echo peak shift (3PEPS), and anisotropy decay measurements were used to study the solvation dynamics in bulk water and interfacial water at ZrO(2) surfaces, using Eosin Y as a probe. The 3PEPS results show a multiexponential behavior with two subpicosecond components that are similar in bulk and interfacial water, while a third component of several picoseconds is significantly lengthened at the interface. The bandwidth correlation function from TA spectra exhibits the same behavior, and the TA spectra are well reproduced using the doorway-window picture with the time constants from PEPS. Our results suggest that interfacial water is restricted to a thickness of less than 5 A. Also the high-frequency collective dynamics of water does not seem to be affected by the interface. On the other hand, the increase of the third component may point to a slowing down of diffusional motion at the interface, although other effects, may play a role, which are discussed.     

Structure of electron-capture dissociation fragments from charge-tagged peptides probed by tunable infrared multiple photon dissociation

In this study, we propose the first spectroscopic structural characterization of c-type ions produced by ECD of a peptide. The structure of c-type ions formed by electron capture dissociation and the overall mechanism leading to their formation are still a question of debate. Depending on the mechanism, c-type ions have been proposed to have either an enol-imine structure (-C(OH)NH) or an amide one (-C(O)-NH2). Since these ions are isomeric, mass spectrometry only cannot discriminate between them, but infrared spectroscopy can bring experimental evidence and help determine which scheme is operative. Using the coupling between a tunable free electron laser and a FT-ICR mass spectrometer, we show that c-type ions have an amide structure, characterized by an IR signature of the C=O stretch at 1731 cm(-1). This result is particularly interesting from the perspective of the elucidation of the ECD mechanism.     

Diffusion processes in mesoporous adsorbents probed by NMR

In this contribution, we review the results of our experimental studies on diffusion of guest molecules in mesoporous solids using pulsed field gradient (PFG) NMR technique. Having unique potentials to non-invasively probe the microscopic diffusion processes in pores, this method may provide quintessential information on the character of molecular propagation for different pore morphologies and fluid phase state. In particular, different modes of molecular diffusion in partially filled pores may be separately probed and the overall diffusion process could be analyzed taking account of the details of the inter-phase coexistence. In addition to the dynamic properties, some information concerning the distribution of guest molecules within the porous matrix may also be obtained.     

Self-assembly and oligomerization of alkyne-terminated molecules on metal and oxide surfaces

We report the self-assembly and subsequent oligomerization of organic molecules based on terthiophenes bearing a terminal alkyne moiety. Molecules with thioacetate and phosphonic acid functional groups were synthesized, enabling molecular self-assembly on metal (Au and Pd) and metal oxide [Al(2)O(3), HfO(2), and indium tin oxide (ITO)] surfaces, respectively. The molecules were assembled from solution and then oligomerized using either 2,5-norbornadiene-rhodium(I) chloride dimer or UV light. UV-vis and infrared absorption spectroscopies and electrochemical techniques show that the molecules assemble to form dense monolayers on the substrate surfaces and oligomerize under the action of a catalyst or UV light.     

Viscoelasticity of gelatin surfaces probed by AFM noise analysis

The viscoelastic properties of surfaces of swollen gelatin were investigated by analyzing the Brownian motion of an atomic force microscopy (AFM) cantilever in contact with the gel surface. A micron-sized glass sphere attached to the AFM cantilever is used as the dynamic probe. When the sphere approaches the gelatin surface, there is a static repulsive force without a jump into contact. The cantilever's Brownian movement is monitored in parallel, providing access to the dynamic sphere-surface interaction as quantified by the dynamic spring constant, kappa, and the drag coefficient, xi. Gelatin is used as a model substance for a variety of other soft surfaces, where the stiffness of the gel can be varied via the solvent quality, the bloom number, and the pH. The modulus derived from the static force-distance curve is in the kPa range, consistent with the literature. However, the dynamic spring constant as derived from the Brownian motion is much larger than the static differential spring constant dF/dz. On retraction, one observes a rather strong adhesion hysteresis. The strength of the bridge (as given by the dynamic spring constant and the drag coefficient) is very small.     

Surface bonding on silicon surfaces as probed by tip-enhanced Raman spectroscopy

Tip-enhanced Raman spectroscopy (TERS) has been used to obtain the Raman signal of surface species on silicon single crystal surfaces without the necessity for surface enhancement by addition of Ag nanoparticles. By illuminating the hydrogen terminated silicon surface covered with a droplet of 4-vinylpyridine with UV light, a 4-ethylpyridine modified silicon surface can be easily obtained. By bringing a scanning tunneling microscope (STM) Au tip with a nanoscale tip apex to a distance of ca. 1 nm from the m...     

Pore morphology of porous polymer particles probed by NMR relaxometry and NMR cryoporometry

The pore size distribution (PSD) and pore connectivity (PC) within porous polymer particles are probed by combining NMR cryoporometry and NMR relaxometry (spin-spin relaxation). With water as a probe molecule, the constant K in the so-called Gibbs-Thompson equation and the surface relaxivity (rho2) were determined to be K = (420 +/- 50) KA and rho2 = (0.44 +/- 0.01) x 10(-6) ms(-1), respectively. Also, the thickness of the interface layer was estimated to be of the order of one monolayer of water molecules. A detailed analysis of the complete set of NMR data enabled the morphology or pore structure to be probed, and is thoroughly discussed in the text.     

Structural properties of oligonucleotide monolayers on gold surfaces probed by fluorescence investigations

We present optical investigations on the conformation of oligonucleotide layers on Au surfaces. Our studies concentrate on the effect of varying surface coverage densities on the structural properties of layers of 12- and 24mer single-stranded DNA, tethered to the Au surface at one end while being labeled with a fluorescent marker at the opposing end. The distance-dependent energy transfer from the marker dye to the metal surface, which causes quenching of the observed fluorescence, is used to provide information on the orientation of the DNA strands relative to the surface. Variations in the oligonucleotide coverage density, as determined from electrochemical quantification, over 2 orders of magnitude are achieved by employing different preparation conditions. The observed enhancement in fluorescence intensity with increasing DNA coverage can be related to a model involving mutual steric interactions of oligonucleotides on the surface, as well as fluorescence quenching theory. Finally, the applicability of the presented concepts for investigations of heterogeneous monolayers is demonstrated by means of studying the coadsorption of mercaptohexanol onto DNA-modified Au surfaces.     

Permeability of anti-fouling PEGylated surfaces probed by fluorescence correlation spectroscopy

The present work reports on in situ observations of the interaction of organic dye probe molecules and dye-labeled protein with different poly(ethylene glycol) (PEG) architectures (linear, dendron, and bottle brush). Fluorescence correlation spectroscopy (FCS) and single molecule event analysis were used to examine the nature and extent of probe-PEG interactions. The data support a sieve-like model in which size-exclusion principles determine the extent of probe-PEG interactions. Small probes are trapped by more dense PEG architectures and large probes interact more with less dense PEG surfaces. These results, and the tunable pore structure of the PEG dendrons employed in this work, suggest the viability of electrochemically-active materials for tunable surfaces.     

Photoinduced desorption of sulfur from gold nanoparticles loaded on metal oxide surfaces

We now report photoinduced sulfur desorption from the surfaces of Au nanoparticles loaded on metal oxides. This reaction occurs in water at ordinary temperature and pressure. Nanometer-sized Au particles have been formed on the surfaces of various metal oxides by deposition-precipitation (Au/oxides). Elemental sulfur (S8) is selectively adsorbed on the Au nanoparticle surfaces of Au/oxides in an atomic state at a coverage of (theta) 1/3. Irradiation (lambdaex > 300 nm) of the sulfur adsorbed Au/anatase TiO2 in water has led to reductive desorption of the sulfurs at room temperature. Electrochemical measurements using Au/oxides indicate that the driving force for this reaction is the photoinduced upward shift of Fermi energy of the metal oxide-supported Au nanoprticles. This study will open up a novel and wide application of heterogeneous photocatalysis for thermal catalysts.     

Elastic deformation of membrane bilayers probed by deuterium NMR relaxation

In deuterium ((2)H) NMR spectroscopy of fluid lipid bilayers, the average structure is manifested in the segmental order parameters (S(CD)) of the flexible molecules. The corresponding spin-lattice relaxation rates (R(1Z) depend on both the amplitudes and the rates of the segmental fluctuations, and indicate the types of lipid motions. By combining (2)H NMR order parameter measurements with relaxation studies, we have obtained a more comprehensive picture of lipids in the liquid-crystalline (L(alpha)) state than formerly possible. Our data suggest that a lipid bilayer constitutes an ordered fluid, in which the phospholipids are grafted to the aqueous interface via their polar headgroups, whereas the fatty acyl chains are in effect liquid hydrocarbon. Studies of (2)H-labeled saturated lipids indicate their R(1Z) rates and S(CD) order parameters are correlated by a model-free, square-law functional dependence, signifying the presence of relatively slow bilayer fluctuations. A new composite membrane deformation model explains simultaneously the frequency (magnetic field) dependence and the angular anisotropy of the relaxation. The results imply the R(1Z) rates are due to a broad spectrum of 3-D collective bilayer excitations, together with effective axial rotations of the lipids. For the first time, NMR relaxation studies show that the viscoelastic properties of membrane lipids at megahertz frequencies are modulated by the lipid acyl length (bilayer thickness), polar headgroups (bilayer interfacial area), inclusion of a nonionic detergent (C(12)E(8)), and the presence of cholesterol, leading to a range of bilayer softness. Our findings imply the concept of elastic deformation is relevant on lengths approaching the bilayer thickness and less (the mesoscopic scale), and suggest that application of combined R(1Z) and S(CD) studies of phospholipids can be used as a simple membrane elastometer. Heuristic estimates of the bilayer bending rigidity kappa and the area elastic modulus K(a) enable comparison to other biophysical studies, involving macroscopic deformation of thin membrane lipid films. Finally, the bilayer softness may be correlated with the lipid diversity of biomembranes, for example, with regard to membrane curvature, repulsive interactions between bilayers, and lipid-protein interactions.     

Structure and bonding of ethoxy species adsorbed on transition metal surfaces

The interaction of the ethoxy radical with Cu(111), Ag(111), Pd(111) and Au(111) has been studied using a periodic density functional approach. The most stable adsorption site is the fcc with adsorption energies in the 1.1–2.2 eV interval. All analyses consistently indicate that ethoxy becomes negatively charged, that the presence of ethoxy slightly perturbs the electronic structure of the metallic surface, that the interaction is essentially of electrostatic character and not directional predicting a rather mobile species. The calculated adsorption energies are found to correlate almost linearly with the total net charge on the ethoxy moiety thus confirming that the electrostatic interactions dominate the bonding between this organic species and the underlying metallic surfaces.     

Conformational equilibrium in alanine-rich peptides probed by reversible stretching simulations

Reversible stretching of the alanine-rich peptide 3K (Proc. Natl. Acad. Sci. USA 1989, 86, 5286-5290) and its analogue MW (Nature 1992, 359, 653-655) is examined using molecular dynamics simulations in explicit water. In both cases, sampling of the extension pathway is obtained on the 10 ns time scale by applying an adaptive biasing force. The free energy profile reveals a single minimum associated with a contiguous alpha-helix. Short 3(10)-helical motifs are observed in folded as well as extended conformations, in accordance with their proposed role as folding intermediates. The native 3(10)-helical content of both peptides is found, however, to be no higher than a few percent. Difficulties in both the definition and the detection of secondary structure motifs, most notably in relation to bifurcated hydrogen bonds, are proposed to account for the discrepancy between 3(10)-helical propensities reported by several authors, based on experimental and computational results.     

Electrostatic orientation of enzymes on surfaces for ligand screening probed by force spectroscopy

In this letter, we show that electrostatic immobilization provides a simple but effective approach for the immobilization and orientation of carbonic anhydrase onto charged surfaces. The enzyme is oriented differently on oppositely charged surfaces, with the majority of active sites facing upward on a positively charged surface and downward on a negatively charged surface. An array of negatively charged microscale surface patterns within a positively charged background was prepared by microcontact printing and used as the substrate to immobilize the enzymes. This enabled the probing of the enzyme orientations on the two differently charged surface regions by force spectroscopy with the same atomic force microscopy (AFM) probe modified with a thiolated sulfonamide inhibitor. The unbinding forces between the inhibitor tip and the enzyme immobilized on the two differently charged surfaces were measured. Two control experiments, blocking of the enzyme active site with a competitive inhibitor and removal of the zinc ion from the enzyme catalytic center, were employed to distinguish between specific and nonspecific interactions and to further verify the differences in enzyme orientation. Autocorrelation analysis of the force histograms was carried out to evaluate the specific single enzyme-inhibitor interaction force.     

Time-and angle resolved reflection spectroscopy of the oxide layer formation on metal surfaces

The diffuse reflectance spectra and the angular distribution of the reflected light of oxide layers on some rough metal substrates (Fe,Cu,Ti) have been measured during their generation in aqueous electrolytes applying variable electric fields and in oxygen atmosphere of varying temperatures. A diode-array camera with light guide technique was used for the registration of complete spectra. The resulting spectra are compared with the absorption of well-known oxide phases of the corresponding metals. The kinetics of the layer formation resp. the change of the reflectance was investigated in the time domain of 1 ms - 1000 s.