THE DEVELOPMENT OF EXCITON MIGRATION ROUTES FOR PHYCOCYANIN 645 AND ALLOPHYCOCYANIN

Abstract— The origin of the comparatively complex absorption spectrum of the cryptomonad biliprotein, phycocyanin 645 from Chroomonas species, has been investigated by deconvolution of its absorption and CD spectra together with fluorescence polarization studies. The visible absorption and CD spectra were each deconvoluted into four components, three pure Gaussian and one Gaussian-Lorentzian chimera. The difference spectrum between the visible absorption spectra of partially renatured and partially dissociated protein and the fluorescence polarization spectrum are compared to these deconvolutions. All results are consistent with a previous proposal that band splitting from a pair of strongly-coupled dipoles contributes to the absorption and CD spectra of this biliprotein. A model for the flow of exciton migration through this protein is presented that incorporates these data [together with appropriate literature reports]. This exciton migration model together with one for the biliprotein, allophycocyanin, includes both strong and very weak coupling of dipoles. This combination of mechanisms has salient influence on the visible absorption spectra and the routes of exciton migration characteristic of these two proteins.     

A study of the electronic spectra of 9-fluorenone

The absorption and MCD spectra of 9-fluorenone are measured. The CD spectra of the β-cyclodextrin complex with 9-fluorenone are also measured. The assignment for the first (≈26.0 × 10³ cm^?1) and fourth (≈48.0 × ³ cm^?1) absorption band has been determined from the sign of the CD spectra by reference to the observed MCD spectra.     

Chiroptical study of α-aliphatic amino acid films in the vacuum ultraviolet region

A series of natural circular dichroism (CD) and absorption spectra for films of α-aliphatic amino acids--such as alanine, aminobutyric acid, norvaline, norleucine, valine, leucine, and isoleucine--in the vacuum ultraviolet (VUV) region were observed with the absolute values of optical constants at the undulator-based CD beamline TERAS BL5. Preliminary predictions of some CD spectra were also performed, based on quantum-chemical calculations using the crystal structure. Although the absorption spectra show similar features to each other, significant differences between the CD spectra were found, especially in the 7-8 eV region. The CD spectra of aliphatic amino acids with branched alkyl groups in the side-chain--such as valine, leucine, and isoleucine--exhibit strong negative CD peaks in this energy region. In contrast, the corresponding CD peaks were weak or absent in the spectra of amino acids with straight alkyl groups. Our simple calculation, and the absorption spectra of alkanes, suggest that this difference partly originates from the contribution of the alkyl group. Clear discrepancies between the CD spectra of these amino acids in solutions and those in the solid state were also observed; this is probably caused by the different molecular structures in each state. Our results clearly indicated that CD spectra in the VUV region were very sensitive to the conformations of chiral molecules.     

Circular dichroism spectra of DNA hairpins studied by the green function method

The circular dichroism (CD) spectrum of a large biological molecule represented as an array of interacting chromophores is investigated. The configuration-averaged Green function formalism is developed to describe the CD and absorption spectra. The perturbation theory expansion is derived for absorption and CD spectra in the case of strong interaction of chromophores with their environment (solvent and/or internal dynamics) compared to their interaction with each other. We apply this formalism to study CD spectra of DNA hairpins.     

Vibronic structure of the circular dichroism and absorption spectra of bianthryls

It will be shown that factors of virtually no influence on the vibronic structure of the absorption spectra in biaryls may profoundly change the correspoding vibronic structure in the CD spectra. This is illustrated by the theoretical analysis of the experimental vibronic absorption and CD spectra of some bianthryl derivatives.     

Theory of the absorption and circular dichroism spectra of helical molecular aggregates

A theory of the electronic circular dichroism (CD) and optical rotatory dispersion (ORD) of infinite aggregates exhibiting cylindrical symmetry is presented in which, to the authors' knowledge, for the first time vibrational structure is included explicitly. It is shown that, with the coherent exciton scattering approximation in the Green function approach, the detailed vibrational structure of the aggregate absorption. CD and ORD bands can be calculated from a knowledge of the electronic coupling and the monomer absorption line shape alone. Detailed model calculations for a single helix are made and the results are used to expose the origin of different spectral features. A good reproduction of experimental J-aggregate spectra is obtained, using the same electronic interaction to fit both absorption and CD spectral line shapes. The theory allows some prediction of aggregate geometry to be made, but it is shown that an unambiguous geometrical assignment can only be made where experimental spectra for light of different propagation directions with respect to the cylinder axis are available.     

Calculation of the circular dichroism spectra of carbon monoxy- and deoxy myoglobin: interpretation of a time-resolved circular dichroism experiment

A calculation of the circular dichroism (CD) spectra of carbon monoxy- and deoxy myoglobin is carried out in relation with a time-resolved CD experiment. The calculation is based on the polarizability theory and the parameters are adjusted to fit the experimental absorption and CD spectra. By performing the calculation for intermediate configurations of the protein, we are able to propose an explanation of the CD structure observed on a sub-100 ps time scale. The role of the proximal histidine is, in particular, clearly demonstrated in the first step of the myoglobin relaxation from its liganded to it deliganded form.     

铜(Ⅱ)离子与神经红蛋白的相互作用

利用紫外可见吸收光谱、荧光光谱、同步荧光光谱及圆二色(CD)光谱研究了铜髤离子与神经红蛋白(NGB)的相互作用。结果表明,Cu2+离子使NGB在280nm处的紫外吸收增强,说明Cu2+与NGB发生了相互作用;Cu2+使NGB内源性荧光发生猝灭,其猝灭机制为静态猝灭;同步荧光光谱表明,Cu2+使色氨酸微环境的疏水性有所降低,Cu2+对NGB的作用位点更接近于色氨酸;CD光谱显示Cu2+没有引起NGB二级结构明显的变化。     

Density Functional Study of Tetraphenylporphyrin Long-Range Exciton Coupling

The performance of time-dependent density functional theory (TDDFT) for calculations of long-range exciton circular dichroism (CD) is investigated. Tetraphenylporphyrin (TPP) is used as a representative of a class of strongly absorbing chromophores for which exciton CD with chromophore separations of 50 Å and even beyond has been observed experimentally. A dimer model for TPP is set up to reproduce long-range exciton CD previously observed for a brevetoxin derivative. The calculated CD intensity is consistent with TPP separations of over 40 Å. It is found that a hybrid functional with fully long-range corrected range-separated exchange performs best for full TDDFT calculations of the dimer. The range-separation parameter is optimally tuned for TPP, resulting in a good quality TPP absorption spectrum and small DFT delocalization error (measured by the curvature of the energy calculated as a function of fractional electron numbers). Calculated TDDFT data for the absorption spectra of TPP are also used as input for a ‘matrix method’ (MM) model of the exciton CD. For long-range exciton CD, comparison of MM spectra with full TDDFT CD spectra for the dimer shows that the matrix method is capable of producing very accurate results. A MM spectrum obtained from TPP absorption data calculated with the nonhybrid Becke88–Perdew86 (BP) functional is shown to match the experimental brevetoxin spectrum ‘best’, but for the wrong reasons.     

Comparison of calculated and observed CD spectra of liquid crystalline dispersions formed from double-stranded DNA and from DNA complexes with coloured compounds

The CD spectra of dispersions of DNA, in the form of cholesteric liquid crystalline droplets, in an aqueous continuum have been studied. Calculated curves have been fitted to experimental spectra. The amplitude and the sign of the intense absorption band of the purine and pyrimidine bases vary with the droplet size, the pitch and the twist sense of the cholesteric phase. The CD spectra of dispersions of the complex formed by DNA and a coloured intercalating antibiotic have been similarly studied. A general satisfactory level of fitting between observed and calculated CD spectra was found.     

Binary and ternary complexes containing alpha-cyclodextrin and bromonaphthalene derivatives: a note of caution in interpreting UV absorption spectral data

Ultraviolet absorption spectra, NMR spectra, and phosphorescence measurements were used to confirm that alpha-cyclodextrin (CD) and 2-bromo-6-beta-D-glucopyranosidylnaphthalene (BGN) form only a binary complex and to characterize its properties. The binding constant for the CD.BGN complex was found to be 886 +/- 24 M(-1) and 770 +/- 110 M(-1) from NMR and UV absorbance measurements, respectively. Comparison of spectral properties revealed the CD.BGN complex to be binary and complexes containing CD and n-alkoxy (n-alkanoloxy) derivatives of 2-bromonaphthalene (N) to be of higher order, notably ternary. A red shift was observed in the UV absorption spectra of the CD(2).N complexes. The absence of a hydroxyl hydrogen atom on the naphthalene ring of N molecules made it impossible for hydrogen bond formation to a glucosidic oxygen in the CD cavity to be the cause of the red shift. The similar red shifts reported herein and for the ternary complexes of CD with 2-naphthol and 2-bromo-6-hydroxynaphthalene (BOHN) indicated that hydrogen bond formation between the hydroxyl hydrogen and glucosidic oxygen atom might not be the cause of the red shift for the latter guest molecules, as has been proposed previously. This result emphasizes the caution necessary in using UV absorption spectral data as evidence for hydrogen bond formation in molecular complexes containing CD.     

Frenkel‐exciton decomposition analysis of circular dichroism and circularly polarized luminescence for multichromophoric systems

Recently, a method to calculate the absorption and circular dichroism (CD) spectra based on the exciton coupling has been developed. In this work, the method was utilized for the decomposition of the CD and circularly polarized luminescence (CPL) spectra of a multichromophoric system into chromophore contributions for recently developed through‐space conjugated oligomers. The method which has been implemented using rotatory strength in the velocity form and therefore it is gauge‐invariant, enables us to evaluate the contribution from each chromophoric unit and locally excited state to the CD and CPL spectra of the total system. The excitonic calculations suitably reproduce the full calculations of the system, as well as the experimental results. We demonstrate that the interactions between electric transition dipole moments of adjacent chromophoric units are crucial in the CD and CPL spectra of the multichromophoric systems, while the interactions between electric and magnetic transition dipole moments are not negligible. © 2018 Wiley Periodicals, Inc.     

N-quaternary compounds—XLIII synthesis and circular dichroism of α-amino and α-N,N,N-trimethylammonio acid amides

CD spectra of α-trimethylammonio acid amides contain 2 or 3 absorption bands in the 200–260 nm region. CD spectra of α-amino acid amides also contain multiple bands in this region. The possible origin of the CD bands is discussed.     

Magnetic Circular Dichroism and Electronic Spectra of Tropothione

The magnetic circular dichroism (MCD) and electronic absorption spectra of tropothione have been measured. The circular-dichroism (CD) spectrum of the β-cyclodextrin complex with tropothione is also reported. The absorption bands of tropothione are assigned.     

Study on the sonodynamic activity and mechanism of promethazine hydrochloride by multi-spectroscopic techniques

In this paper, the bovine serum albumin (BSA) was selected as a target molecule, the sonodynamic damage to protein in the presence of promethazine hydrochloride (PMT) and its mechanism were studied by the means of absorption, fluorescence and circular dichroism (CD) spectra. The results of hyperchromic effect of absorption spectra and quenching of intrinsic fluorescence spectra indicate that the ultrasound-induced BSA molecules damage is enhanced by PMT. The damage degree of BSA molecules increases with the increase of ultrasonic irradiation time and PMT concentration. The results of synchronous fluorescence, three-dimensional fluorescence and CD spectra confirmed that the synergistic effects of ultrasound and PMT induced the damage of BSA molecules. The results of oxidation-extraction photometry with several reactive oxygen species (ROS) scavengers indicate that the damage of BSA molecules could be mainly due to the generation of ROS and both (1)O(2) and OH are the important mediators of the ultrasound-induced BSA molecules damage in the presence of PMT.     

Circular dichroism of quinoid pigments from Far Eastern representatives of the family Boraginaceae

The electronic absorption and circular dichroism (CD) spectra of ten natural and modified quinoid pigments are described. An assignment has been made of the dichroic absorption in the 250–600 nm region of the CD spectra of the pigments investigated. It has been shown that in the solution of stereochemical questions for such compounds the most informative region of the CD spectrum is the 250–350 nm interval.Pacific Ocean Institute of Bioorganic Chemistry, Far Eastern Scientific Center, Academy of Sciences of the USSR, Vladivostok. Translated from Khimiya Prirodnykh Soedinenii, No. 5, pp. 568–573, September–October, 1983.     

Circular dichroism spectra of 8H-3-oxaheptalen-8-one included in β-cyclodextrin

The circular dichroism (CD) spectra of β-cyclodextrin (β-CyD) complex with 8H-3-oxaheptalen-8-one (1) are measured. From the signs of the CD spectra of the β-CyD complex with 1, the polarization directions of the absorption bands are investigated.     

MOLECULAR PROBES: PHOTOISOMERIZATION OF OPTICALLY ACTIVE AZO COMPOUNDS

Abstract— The azo group may be used as a probe to gain information about the molecular surroundings. The circular dichroism (CD) spectra of two azo steroids have been investigated in media of different viscosity and polarity. The CD spectra of the trans -compounds are only slightly affected by the environment while those of the cis -compounds are strongly dependent on the environment. Photoisomerization is analysed by absorption and ellipticity diagrams as tests for chromophoric and conformeric uniformity. Our results support an inversion mechanism of the photoisomerization of azo compounds.     

Reversible plasmonic circular dichroism of Au nanorod and DNA assemblies

Reversible plasmonic circular dichroism (CD) responses are realized for the first time based on temperature-dependent assembly and disassembly of Au nanorod (Au NR) and DNA hybrids. Compared with the conventional UV-vis absorption spectra, the changes in both intensity and line shape of plasmonic CD signals are much more pronounced, leading to a preliminary detection limit of DNA as low as 75 nM. The mechanism and influence factors of reversible plasmonic CD responses are explored.     

Syntheses and photophysical studies of cyclodextrin derivatives with two proximate anthracenyl groups

A series of permethylated cyclodextrin derivatives, cyclodextrin dimers doubly bridged with two anthracene moieties (An2CD2) and singly bridged with one (AnCD2) and the monomer bearing two anthracene moieties (An2CD), were newly synthesized. For An2CD2, the two isomeric forms are also identified. All compounds are soluble in both aqueous and various organic solvents. The bisanthracene systems, An2CD2 and An2CD, show the thermal equilibrium in an aqueous solution between the intramolecularly interacting (closed) and less-interacting (open) states of the anthracene moieties, which results in the temperature-dependent absorption changes. These systems also show the characteristic excimer emission that is enhanced in water and weakened in organic solvents. The excitation spectra for the monomer and excimer fluorescence are found to be quite different from each other and similar to the absorption spectra of the open and the closed forms, respectively. The observed unique parallelism between excitation and absorption spectra for the present excimer systems indicates the dual ground state-dual excitation scheme where the excitation state formed from the closed ground state mainly gives excimer. The fluorescence lifetime analyses reveal that the rates of the conversion from the excited state of the open form to that of the closed one (6.0 x 10(6) s(-1) for An2CD2-2) are largely retarded compared with that of the ethyleneoxy linked bisanthracene system (8.8 x 10(7) s(-1)).