Comparison of aromatic NH···π, OH···π, and CH···π interactions of alanine using MP2, CCSD, and DFT methods

A comparison of the performance of various density functional methods including long‐range corrected and dispersion corrected methods [MPW1PW91, B3LYP, B3PW91, B97‐D, B1B95, MPWB1K, M06‐2X, SVWN5, ωB97XD, long‐range correction (LC)‐ωPBE, and CAM‐B3LYP using 6‐31+G(d,p) basis set] in the study of CH···π, OH···π, and NH···π interactions were done using weak complexes of neutral (A) and cationic (A⁺) forms of alanine with benzene by taking the Møller–Plesset (MP2)/6‐31+G(d,p) results as the reference. Further, the binding energies of the neutral alanine–benzene complexes were assessed at coupled cluster (CCSD)/6‐31G(d,p) method. Analysis of the molecular geometries and interaction energies at density functional theory (DFT), MP2, CCSD methods and CCSD(T) single point level reveal that MP2 is the best overall performer for noncovalent interactions giving accuracy close to CCSD method. MPWB1K fared better in interaction energy calculations than other DFT methods. In the case of M06‐2X, SVWN5, and the dispersion corrected B97‐D, the interaction energies are significantly overrated for neutral systems compared to other methods. However, for cationic systems, B97‐D yields structures and interaction energies similar to MP2 and MPWB1K methods. Among the long‐range corrected methods, LC‐ωPBE and CAM‐B3LYP methods show close agreement with MP2 values while ωB97XD energies are notably higher than MP2 values. © 2010 Wiley Periodicals, Inc. J Comput Chem 2010     

Interaction in the ternary complexes of HNO3···HCl···H2O: a theoretical study on energetics, structure, and spectroscopy

Ternary complexes of HNO(3)···HCl···H(2)O were investigated by ab initio calculations with aug-cc-pVDZ and aug-cc-pVTZ basis sets. The results are analyzed in terms of structures, energetics, and infrared vibrational frequencies. In all minima, neither HNO(3) nor HCl becomes ionized. The contribution of the nonadditivity effect, which is significant for hydrogen-bonded clusters, is bigger for the cyclic structures in which HNO(3) acts as a proton donor to HCl, although the global minimum contains HNO(3) donating its proton to a H(2)O molecule.     

EPR, ENDOR, and DFT study of free radicals in L-lysine·HCl·2H2O single crystals X-irradiated at 298 K

With K-band EPR (Electron Paramagnetic Resonance), ENDOR (Electron-Nuclear DOuble Resonance), and EIE (ENDOR-induced EPR) techniques, three free radicals (RI-RIII) in L-lysine hydrochloride dihydrate single crystals X-irradiated at 298 K were detected at 298 K, and six radicals (R1, R1', R2-R5) were detected if the temperature was lowered to 66 K from 298 K. R1 and RI dominated the central portion of the EPR at 66 and 298 K, respectively, and were identified as main chain deamination radicals, (-)OOC?H(CH(2))(4)(NH(3))(+). R1' was identified as a main chain deamination radical with the different configuration from R1 at 66 K, and it probably formed during cooling the temperature from 298 to 66 K. The configurations of R1, R1', and RI were analyzed with their coupling tensors. R2 and R3 each contain one α- and four β-proton couplings and have very similar EIEs at three crystallographic axes. The two-layer ONIOM calculations (at B3LYP/6-31G(d,p):PM3) support that R2 and R3 are from different radicals: dehydrogenation at C4, (-)OOCCH(NH(3))(+)CH(2)?H(CH(2))(2)(NH(3))(+), and dehydrogenation at C5, (-)OOCCH(NH(3))(+)(CH(2))(2)?HCH(2)(NH(3))(+), respectively. The comparisons of the coupling tensors indicated that R2 (66 K) is the same radical as RII (298 K), and R3 is the same as RIII. Thus, RII and RIII also are the radicals of C4 and C5 dehydrogenation. R4 and R5 are minority radicals and were observed only when temperature was lowered to 66 K. R4 and R5 were only tentatively assigned as the side chain deamination radical, (-)OOCCH (NH(3))(+)(CH(2))(3)?H(2), and the radical dehydrogenation at C3, (-)OOCCH(NH(3))(+)?H(CH(2))(3)(NH(3))(+), respectively, although the evidence was indirect. From simulation of the EPR (B//a, 66 K), the concentrations of R1, R1', and R2-R5 were estimated as: R1, 50%; R1', 11%; R2, 14%; R3, 16%; R4, 6%; R5, 3%.     

A Study of Stability of Potassium Fluoride Peroxosolvates KF · nH2O2 (n = 1, 2) in Solid State and in Aqueous Solutions

The results obtained in a study of the stability of potassium fluoride peroxosolvates KF nH₂O₂ (n = 1, 2), including that in prolonged storage, are presented. The kinetics of KF nH₂O₂ decomposition in solid state and in aqueous solutions was analyzed. The obtained results characterize potassium fluoride peroxosolvates as the most stable solid carriers of hydrogen peroxide, promising for practical use.     

Isodimorphism of the salts 2RbCl · MIICl2 · 2H2O (MII = Mn,Fe, Co,Cu)

The three-component systems RbClMnCl₂H₂O, 2RbCl · CoCl₂ · 2H₂O2RbCl · CuCl₂ · 2H₂OH₂O, 2RbCl · CoCl₂ · 2H₂O2RbCl · MnCl₂ · 2H₂OH₂O have been studied at 25°C. In the 2RbCl · CoCl₂ · 2H₂O2RbCl · CuCl₂ · 2H₂OH₂O system, a discontinuous series of mixed crystals is formed and in the 2RbCl · CoCl₂ · 2H₂O2RbCl · MnCl₂ · 2H₂OH₂O system, a continuous series is present.The unit cell parameters of the 2RbCl · CoCl₂ · 2H₂O double salt were determined: a = 5.586(2) Å, b = 6.469(3) Å, c = 6.988(2) Å, α = 65.31(3)°, β = 87.69(3)°, γ = 84.65(4)°, volume 228.4 ų, Z = 1.The results obtained and discussed in conjunction with the crystal structure data suggest that for 2M^ICl · M^IICl₂ · 2H₂O type salts the triclinic structure is stable only when the large rubidium and cesium ions participate in combinations with non-Jahn-Teller metal(II) ions. In the cases of Jahn-Teller metal(II) ions or with potassium or ammonium ions a tetragonal structure is always stable.     

Heat capacities of 15Na2O·10(MgO,CaO, TiO2, ZrO2)·75SiO2 glasses

Heat capacitiesC _p of title glasses were measured for temperature ranging from 50 to 550°C. True linear temperature dependences were observed for all studied glasses at temperatures sufficiently lower than the glass transition temperature. The temperature-compositionalC _p dependence was described by the linear model with only statistically significant coefficients retained. The parameters were estimated using the standard least squares procedure. The results obtained may be used for evaluation of viscosity values according to Adam and Gibbs theory.This work was supported by the Slovak Grant Agency for Science under the grant No. 1171/95.     

Synthesis of (VO)2P2O7 catalystsvia exfoliation-reduction of VOPO4·2H2O in butanol in the presence of ethanol

The exfoliation-reduction of VOPO₄·2H₂O in l-butanol oriso-butanol alone, and in a l-butanol/ethanol oriso-butanol/ethanol mixture, were conducted. Although all precursors were composed of a lamellar compound with intercalated alcohol molecules, VOHPO₄·0.5H₂O was formed when the exfoliation-reduction process was carried out in the mixed alcohol. All precursors transformed to a single phase of (VO)₂P₂O₇ under the reaction conditions forn-butane oxidation, but the crystallinity of (VO)₂P₂O₇ was different. The catalyst synthesized iniso-butanol/ethanol was well crystalline (VO)₂P₂O₇, and exhibited higher selectivity to maleic anhydride than that synthesized iniso-butanol alone for then-butane oxidation.     

Infrared characterization of the HCOOH···CO2 complexes in solid argon: stabilization of the higher-energy conformer of formic acid

The complexes of formic acid (HCOOH, FA) with carbon dioxide are studied by infrared spectroscopy in an argon matrix. Two trans-FA···CO(2) and one cis-FA···CO(2) complexes are experimentally identified while the calculations at the MP2(full)/6-311++G(2d,2p) level of theory predict one more minimum for the cis-FA···CO(2) complex. The complex of the higher-energy conformer cis-FA with CO(2) is prepared by vibrational excitation of the ground-state trans-FA conformer combined with thermal annealing. The lifetime of the cis-FA···CO(2) complex in an argon matrix at 10 K is 2 orders of magnitude longer than that of the cis-FA monomer. This big difference is explained by the computational results which show a higher stabilization barrier for the complex. The solvation effects in solid argon are theoretically estimated and their contribution to the stabilization barriers of the higher-energy species is discussed. The relative barrier transmissions for hydrogen tunneling in the cis-FA···CO(2) complex and cis-FA monomer are in good agreement with the experimental decay rates.     

Observation of a double C-H···π interaction in the CH2ClF···HCCH weakly bound complex

The structure of the CH(2)ClF···HCCH dimer has been determined using both chirped-pulse and resonant cavity Fourier-transform microwave spectroscopy. The complex has C(s) symmetry and contains both a double C-H···π interaction, in which one π-bond acts as acceptor to two hydrogen atoms from the CH(2)ClF donor, and a weak C-H···Cl interaction, with acetylene as the donor. Analysis of the rotational spectra of four isotopologues (CH(2)(35)ClF···H(12)C(12)CH, CH(2)(37)ClF···H(12)C(12)CH, CH(2)(35)ClF···H(13)C(13)CH, and CH(2)(37)ClF-H(13)C(13)CH) has led to a structure with C-H···π distances of 3.236(6) ? and a C-H···Cl distance of 3.207(22) ?, in good agreement with ab initio calculations at the MP2/6-311++G(2d,2p) level. Both weak contacts are longer than those observed in similar complexes containing a single C-H···π interaction that lies in the C(s) plane; however, this appears to be the first double C-H···π contact to be studied by microwave spectroscopy, so there is little data for direct comparison. The rotational and chlorine nuclear quadrupole coupling constants for the most abundant isotopologue are: A = 5262.899(14) MHz, B = 1546.8074(10) MHz, C = 1205.4349(7) MHz, χ(aa) = 28.497(5) MHz, χ(bb) = -65.618(13) MHz, and χ(cc) = 37.121(8) MHz.     

Molecular, Thermodynamic, and Kinetic Parameters of the Free Radical C2H5 · in the Gas Phase

The wave function, energy, equilibrium geometry, and normal vibration frequencies of the ground state of the free radical C₂H₅ ^· were obtained by ab initio calculations with inclusion of electron correlation effects at the UB3LYP/6-311++G^{* *} level. The resulting molecular parameters were used to estimate the thermodynamic functions of an ideal gas of C₂H₅ ^·. From the thermodynamic functions of C₂H₅ ^·, I^·, C₂H₅I, C₂H₄, and HI and the kinetic curves of isothermal pyrolysis of ethyl iodide, the absolute rate constants of elementary reactions of free ethyl radical and the mentioned iodine compounds were estimated. The dissociation energy E _{D , 0}(C₂H₅-I) and the standard formation enthalpy _f H ⁰298 (C₂H₅ ^·) were found.     

Synthesis and Characterization of Ethylthioethylcyclopenta-dienyl Organolanthanide Complexes:Cp_2~(Th)LnCl(Ln=Gd,Dy),Cp_2LnCp~(Th)(Ln=Yb,Sm,Dy,Y) and Cp~(Th)ErCl_2·2THF

Introduction Functional substituted cyclopentadienyl organolan-thanide complexes continue to attract considerable at-tention because these donor-functionalized side chains can increase the stability of highly reactive organolan-thanide complexes by forming the additional in-tramolecular chelating coordination with the central metal, and for early lanthanide complexes, the enhanced stability offers the opportunity to explore the reactivity of the remaining ligands.1-4 In addition, the in-tramol…     

Study of the state of uranogermanates MII(HGeUO6)2·6H2O in Aqueous Solutions (MII = Mn, Co, Ni, Cu, Zn)

The state of d-elements uranogermanates M^II(HGeUO₆)₂·6H₂O in aqueous salt solutions in a wide range of ionic strength, ionic composition, and acidity has been investigated. The pH ranges of the uranogermanates stability have been determined, and products of their transformation have been identified. Solubility, solubility equilibrium constant, and Gibbs energy of formation have been determined for the studied uranogermanates. Diagrams of uranium(VI), germanium(IV), and M(II) state in aqueous solutions and in equilibrium solid phases have been plotted.     

Anodic Dissolution of Aluminum in Liquid Electrolytes MF· 2AlEt3 (M = Na,K, Rb)

The kinetics of anodic dissolution of aluminum films electrodeposited on platinum via direct aluminum electrooxidation without preliminary discharge of electrolyte components is studied. The process probably involves adatoms and clusters Al* on the electrode surfaces, with limiting stage Al* – e (A1⁺)_ads.     

On the infrared spectra of libratory modes of H2O molecules in SrX2 · 6H2 O (X = Cl,Br)

A detailed study of the libratory modes of H₂O molecules in the i.r. spectra of SrX₂ · 6H₂O (X = Cl, Br) is reported. The rocking, wagging and twisting libratory modes of (H₂O)_b (bridging type bonding) and (H₂O)_t (terminal type bonding) molecules are assigned at 705, 552, 658 and 460, 400, 438 cm⁻¹ and at 687, 532, 625 and 448, 370, 405 cm⁻¹ in the respective spectra. Using a semi-empirical relation reported by the authors in an earlier communication, the barrier height for (H₂O)_b is estimated to be 22.16 and 20.04 kcal/mole and that for (H₂O)_t to be 10.04 and 8.64 kcal/mole in the respective salts. The value of the force constants K_H and K_H′ for H₂O molecules are also reported.