Surface-enhanced Raman spectroscopic detection of Bacillus subtilis spores using gold nanoparticle based substrates

The detection of bacterial spores requires the capability of highly sensitive and biocompatible probes. This report describes the findings of an investigation of surface-enhanced Raman spectroscopic (SERS) detection of Bacillus subtilis spores using gold-nanoparticle (Au NP) based substrates as the spectroscopic probe. The SERS substrates are shown to be highly sensitive for the detection of B. subtilis spores, which release calcium dipicolinate (CaDPA) as a biomarker. The SERS bands of CaDPA released from the spores by extraction using nitric acid provide the diagnostic signal for the detection, exhibiting a limit of detection (LOD) of 1.5×10(9) spores L(-1) (or 2.5×10(-14) M). The LOD for the Au NP based substrates is quite comparable with that reported for Ag nanoparticle based substrates for the detection of spores, though the surface adsorption equilibrium constant is found to be smaller by a factor of 1-2 orders of magnitude than the Ag nanoparticle based substrates. The results have also revealed the viability of SERS detection of CaDPA released from the spores under ambient conditions without extraction using any reagents, showing a significant reduction of the diagnostic peak width for the detection. These findings have demonstrated the viability of Au NP based SERS substrates for direct use with high resolution and sensitivity as a biocompatible probe for the detection of bacterial spores.     

Heme reactivity is uncoupled from quaternary structure in gel-encapsulated hemoglobin: a resonance Raman spectroscopic study

Encapsulation of hemoglobin (Hb) in silica gel preserves structure and function but greatly slows protein motion, thereby providing access to intermediates along the allosteric pathway that are inaccessible in solution. Resonance Raman (RR) spectroscopy with visible and ultraviolet laser excitation provides probes of heme reactivity and of key tertiary and quaternary contacts. These probes were monitored in gels after deoxygenation of oxyHb and after CO binding to deoxyHb, which initiate conformational change in the R-T and T-R directions, respectively. The spectra establish that quaternary structure change in the gel takes a week or more but that the evolution of heme reactivity, as monitored by the Fe-histidine stretching vibration, ν(FeHis), is completed within two days, and is therefore uncoupled from the quaternary structure. Within each quaternary structure, the evolving ν(FeHis) frequencies span the full range of values between those previously associated with the high- and low-affinity end states, R and T. This result supports the tertiary two-state (TTS) model, in which the Hb subunits can adopt high- and low-affinity tertiary structures, r and t, within each quaternary state. The spectra also reveal different tertiary pathways, involving the breaking and reformation of E and F interhelical contacts in the R-T direction but not the T-R direction. In the latter, tertiary motions are restricted by the T quaternary contacts.     

An infrared and resonance Raman spectroscopic study of phenylazonaphthol pigments

The IR, resonance Raman (RR) and electronic spectra of two phenylazonaphthol pigments, LRC Scarlet and 4BL Red, have been measured and assignments of the vibrational and electronic spectra were facilitated by ab initio calculation s at the B3-LYP/DZ level. Vibrational spectra indicate that the major species in the solid state are the hydrazo tautomers. Electronic spectra are in accordance with the nature of the electronic transitions predicted by time-dependent B3-LYP/DZ calculations.     

Monitoring DPA release from a single germinating Bacillus subtilis endospore via surface-enhanced Raman scattering microscopy

A method for monitoring DPA release from a single germinating Bacillus subtilis endospore is reported. High S/N ratio SERS spectra were obtained with excitation power 3 mW at 647.1 nm and 1 min spectral collection times. The method is proof-of-principle for the SERS detection limit at the single spore level. This represents a 100- to 1000-fold improvement over previously reported detection limits for SERS-based measurements of DPA in endospores.     

ESR and resonance Raman spectroscopic studies of peroxide intermediates derived from iron diazaoxacyclononane

A peroxide-Fe3+ intermediate generation during the Fenton reaction of iron chelate involving a ligating N,N'-di-2-picolyl-4, 7-diaza-1-oxacyclononane (DPC), H2O2/[Fe2+ DPC]2+, is reported. The identity of this peroxide complex is confirmed by resonance Raman (RR) and electron spin resonance (ESR) spectroscopies. The RR spectrum of [Fe2+ DPC]2+ treated with H2O2 shows a frequency at 854 cm(-1) ascribable to v(O-O) vibrational modes of the peroxide-Fe3+ complex with a side-on geometry. On the other hand, the ESR spectrum of H2O2/[Fe2+ DPC]2+ acquired at 77 K exhibits the resonance transition at g = 2.196 and 2.017 due to the peroxide-Fe3+ complex with an axial symmetry. It has been concluded that the H2O2/[Fe2+ DPC]2+ reaction proceeds by rapid bonding of H2O2 to an open coordination site on the central Fe2+ cation.     

Raman spectroscopic study of bacterial endospores

Endospores and endospore-forming bacteria were studied by Raman spectroscopy. Raman spectra were recorded from Bacillus licheniformis LMG 7634 at different steps during growth and spore formation, and from spore suspensions obtained from diverse Bacillus and Paenibacillus strains cultured in different conditions (growth media, temperature, peroxide treatment). Raman bands of calcium dipicolinate and amino acids such as phenylalanine and tyrosine are more intense in the spectra of sporulating bacteria compared with those of bacteria from earlier phases of growth. Raman spectroscopy can thus be used to detect sporulation of cells by a characteristic band at 1,018 cm^–1 from calcium dipicolinate. The increase in amino acids could possibly be explained by the formation of small acid-soluble proteins that saturate the endospore DNA. Large variations in Raman spectra of endospore suspensions of different strains or different culturing conditions were observed. Next to calcium dipicolinate, tyrosine and phenylalanine, band differences at 527 and 638 cm^–1 were observed in the spectra of some of the B. sporothermodurans spore suspensions. These bands were assigned to the incorporation of cysteine residues in spore coat proteins. In conclusion, Raman spectroscopy is a fast technique to provide useful information about several spore components. Figure A difference spectrum between Raman spectra of B. licheniformis LMG 7634 cultured for 6 days and 1 day, together with the reference Raman spectrum of calcium dipicolinate     

UV Raman spectroscopic study on the synthesis mechanism and assembly of molecular sieves

In the past decade, UV Raman spectroscopy has become a powerful technique for the characterization of the synthesis mechanism and assembly of molecular sieves. Ultraviolet excitation avoids fluorescence that plagues visible Raman spectroscopy and concurrently enhances the Raman signal because of the short wavelength of excitation and the resonance Raman effect. The advances of UV Raman spectroscopy, UV resonance Raman spectroscopy and in situ UV Raman spectroscopy and their applications to the characterization of zeolite assembly mechanisms are provided in this tutorial review. Using UV Raman spectroscopy, the synthesis mechanism of zeolites, including the identification of primary units, assembly through key intermediates, transition metal species, and the roles of the organic templates in framework formation have been elucidated, and are discussed herein.     

Ultrahigh-molecular-weight polyethylene: Raman spectroscopic study of melt anisotropy

The Raman spectrum of ultrahigh-molecular-weight polyethylene (UHMWPE) has been obtained in the temperature interval 135–208°C, a region where optical anisotropy was observed to exist. On the basis of our spectroscopic evidence, we believe that ordered regions persist in the melt above the calorimetrically determined melting point, and that part of the polyethylene chain is in an enviroment which is similar to that of the orthorhombic crystal. These ordered domains disappear with increasing temperature, but no calorimetric phase transition is associated with this change. We postulate that the very long relaxation times associated with the highly viscous melt keep the polyethylene chains in ordered environments which persist until decreased viscosity at increased temperature allows long-range segmental motion. Our evidence supports the view that the melt anisotropy of UHMWPE arises from oriented slowly melting superheated crystals and not from a smectic liquid-crystalline phase.     

A resonance Raman,surface-enhanced resonance Raman,IR, and ab initio vibrational spectroscopic study of nickel(II) tetraazaannulene complexes

The IR and resonance Raman spectra of the nickel(II) complexes of dibenzo[b,i][1,4,8,11]tetraaza[14]annulene (TAA) and 5,7,12,14-tetramethyldibenzo[b,i][1,4,8,11]tetraaza[14]annulene (TMTAA) have been measured and compared with ab initio calculations of the vibrational wavenumbers at the B3-LYP level using the LanL2DZ basis set. An excellent fit is found between the experimental and calculated data, enabling precise vibrational assignments to be made. Surface-enhanced resonance Raman spectra were obtained following adsorption on Ag electrodes, with potentials in the range -0.1 to -1.1 V vs Ag/AgCl. There is evidence for contributions from both the electromagnetic and charge transfer (CT) surface enhancement mechanisms. The data indicate that variations in band intensities with electrode potential can be interpreted in terms of the CT mechanism.     

Surface-enhanced resonance Raman spectroscopic characterization of the protein native structure

Surface-enhanced resonance Raman scattering (SERRS) spectra of biological species are often different from their resonance Raman (RR) spectra. A home-designed Raman flow system is used to determine the factors that contribute to the difference between the SERRS and RR of met-myoglobin (metMb). The results indicate that both the degree of protein-nanoparticles interaction and the laser irradiation contribute to the structural changes and are responsible for the observed differences between the SERRS and RR spectra of metMb. The prolonged adsorption of the protein molecules on the nanoparticle surface, which is the condition normally used for the conventional SERRS experiments, disturbs the heme pocket structure and facilitates the charge transfer process and the photoinduced transformation of proteins. The disruption of the heme pocket results in the loss of the distal water molecule, and the resulting SERRS spectrum of metMb shows a 5-coordinated high-spin heme. The flow system, when operated at a moderately high flow rate, can basically eliminate the factors that disturb the protein structure while maintaining a high enhancement factor. The SERRS spectrum obtained from a 1 x 10 (-7) M metMb solution using this flow system is basically identical to the RR spectrum of a 5 x 10 (-4) M metMb solution. Therefore, the Raman flow system reported here should be useful for characterizing the protein-nanoparticles interaction and the native structure of proteins using SERRS spectroscopy.     

Interlayer stacking disorder in zeolite beta family: a Raman spectroscopic study

Raman spectroscopy has been applied to series of BEA- and BEC-type samples differing from each other in size, Si/Al ratio and polymorph percentage in order to analyse the effect of interlayer stacking arrangements on the vibrational modes of zeolite beta. The Raman peaks observed in the spectral range 250-550 cm-1 were assigned to the rings building the basic (001)-layer and to those linking the adjacent layers in zeolite beta. It is shown that the intensity ratio rho between the Raman signals at 314 and 343 cm-1 is most sensitive to the degree of periodicity faults along the c direction. A larger value of rho indicates a larger size of polymorph stacking sequence, i.e. improvement of the stacking faultlessness. The interlayer stacking disorder and the degree of connectivity point defects are higher in nanosized zeolite beta than in micron-sized crystals. The Al content influences the concentration of defected SiOH groups, but is less important for the interlayer stacking sequences in colloidal zeolite beta.     

Photochromic crown ether complexes: A Raman spectroscopic study

Resonance and preresonance Raman spectra have been obtained in the region 400–1700 cm⁻¹ for some benzothiazolium and indolinium steryl dyes containing a crown ether ring. Spectra arising from the trans isomers are observed selectively due to the resonance effect, and the principal features can be attributed to modes of the central conjugated PhN⁺CCCPh unit present in each of these molecules. Complex formation between the dye molecules and Mg²⁺ in acetonitrile solution results in intramolecular electron transfer. This is observed in the Raman spectra as a downshift of a band assigned to PhO vibration in the crown ether unit, and upshifts of several bands associated with the PhN⁺CCCPh unit, including the phenyl ring, CC and ⁺NC stretches. The results demonstrate the sensitivity of the Raman spectra to changes in the structure and bonding within these photochromic complexing agents on binding to metal ions, and indicate that they may serve as a useful probe for the complicated photoisomerization and complexation reactions of these interesting systems.     

Raman spectroscopic study of vanadium oxide nanotubes

Raman-scattering measurements have been used to study the microstructure of vanadium oxide nanotubes (VO_x-NTs). The Raman spectra of VO_x-NTs reflect the various (group) vibrations of V-O type and lattice vibration of the layered structure as well as organic group vibration of the residual organic template. Moreover, it is confirmed that the residual organic template can be removed by irradiation of laser under the preservation of the tubular morphology, which provides the possibility for favoring the scaling-up of removing the residual organic template in the structure of VO_x-NTs.     

Raman spectroscopic study of mixed carbonate materials

The main parameters for precipitation of mixed carbonate materials have been studied by Raman microscopy. These carbonates are compounds of barium, strontium and calcium. It has been shown that the Raman spectrum of a sample is exclusively controlled by its composition, the precipitation parameters do not affect the crystal structure. Even at relatively low levels, the calcium content of a sample can dominate the vibrational frequencies as measured by Raman spectroscopy. Calcium contents greater than 17% show this effect to a considerable degree, and give the broadest or two Raman peaks and thus the least uniform unit cells. The analysis of the lattice modes demonstrates that each Raman shift observed for a mixed carbonate sample corresponds to a specific crystal structure. Some peaks lie within two or three shifts that are observed for different crystal structures.     

A Raman spectroscopic study of synthetic giniite

The mineral giniite has been synthesised and characterised by XRD, SEM and Raman and infrared spectroscopy. SEM images of the olive-green giniite display a very unusual image of pseudo-spheres with roughened surfaces of around 1-10microm in size. The face to face contact of the spheres suggests that the spheres are colloidal and carry a surface charge. Raman spectroscopy proves the (PO4)3- units are reduced in symmetry and in all probability more than one type of phosphate unit is found in the structure. Raman bands at 77K are observed at 3380 and 3186cm-1 with an additional sharp band at 3100cm-1. The first two bands are assigned to water stretching vibrations and the latter to an OH stretching band. Intense Raman bands observed at 396, 346 and 234cm-1are attributed to the FeO stretching vibrations. The giniite phosphate units are characterised by two Raman bands at 1023 and 948cm-1 assigned to symmetric stretching mode of the (PO4)3- units. A complex band is observed at 460.5cm-1 with additional components at 486.8 and 445.7cm-1 attributed to the nu(2) bending modes suggesting a reduction of symmetry of the (PO4)3- units.     

Fourier-transform Raman spectroscopic study of a Neolithic waterlogged wood assemblage

The use of Fourier-transform Raman spectroscopy for characterising lignocellulosics has increased significantly over the last twenty years. Here, an FT-Raman spectroscopic study of changes in the chemistry of waterlogged archaeological wood of Pinus sp. and Quercus sp. from a prehistoric assemblage recovered from northern Greece is presented. FT-Raman spectral features of biodeteriorated wood were associated with the depletion of lignin and/or carbohydrate polymers at various stages of deterioration. Spectra from the archaeological wood are presented alongside spectra of sound wood of the same taxa. A comparison of the relative changes in intensities of spectral bands associated with lignin and carbohydrates resulting from decay clearly indicated extensive deterioration of both the softwood and hardwood samples and the carbohydrates appear to be more deteriorated than the lignin. The biodeterioration of the archaeological timbers followed a pattern of initial preferential loss of carbohydrates causing significant loss of cellulose and hemicellulose, followed by the degradation of lignin.     

Simultaneous detection of two triplets: a time-resolved resonance Raman study

Solvents are known to affect the triplet state structure and reactivity. In this paper, we have employed time-resolved resonance Raman (TR3) spectroscopy to understand solvent-induced subtle structural changes in the lowest excited triplet state of thioxanthone. Density functional theory (DFT) combined with the self-consistent reaction field (SCRF) implicit solvation model has been used to calculate the vibrational frequencies in the solvents. Here, we report a unique observation of the coexistence of two triplets, which has been substantiated by the probe wavelength-dependent Raman experiments. The coexistence of two triplets has been further supported by photoreduction experiments carried out at various temperatures.     

Raman spectroscopic study on boron-doped silicon nanoparticles

Raman analyses were performed on thin films prepared from B-doped Si nanoparticles with an average diameter of 15 nm using the spin-coating method. The resulting spectrum exhibited a broad band with a peak near 520 cm⁻¹. The band was decomposed into three bands corresponding to the crystalline, grain boundary (GB), and amorphous regions by the least-squares band-fitting method based on the three Voigt bands. The fractions of the crystalline, GB, and amorphous regions were 37%, 35%, and 28%, respectively. A spherical particle exhibited an ordered crystalline core surrounded by a disordered shell in a transmission electron microscope (TEM) image. The crystalline fraction of the 15-nm B-doped Si nanoparticle film was much lower than that of the 19-nm P-doped Si nanoparticle film. This result suggested that the B-doping mechanism was different from that of P-doping. The temperature of the sample was estimated from the ratio of the peak intensities of anti-Stokes to Stokes Raman bands (I^AS/I^S) observed near 520 cm⁻¹. The temperature of the B-doped Si nanoparticle film upon irradiation at a power density of 4.6 kW/cm² was 298 °C, whereas the temperature of the P-doped Si nanoparticle film was 92 °C. The B-doped Si nanoparticle films were capable of producing light-induced heat.     

A molecular spectroscopic view of surface plasmon enhanced resonance Raman scattering

The enhancement of resonance Raman scattering by coupling to the plasmon resonance of a metal nanoparticle is developed by treating the molecule-metal interaction as transition dipole coupling between the molecular electronic transition and the much stronger optical transition of the nanoparticle. A density matrix treatment accounts for coupling of both transitions to the electromagnetic field, near-resonant energy transfer between the molecule-excited and nanoparticle-excited states, and dephasing processes. This fully quantum mechanical approach reproduces the interference effects observed in extinction spectra of J-aggregated dyes adsorbed to metal nanoparticles and makes testable predictions for surface-enhanced resonance Raman excitation profiles.     

The pH dependent Raman spectroscopic study of caffeine

First of all the surface enhanced Raman spectroscopy (SERS) and normal Raman spectra of caffeine aqueous solution were obtained at different pH values. In order to obtain the detailed vibrational assignments of the Raman spectroscopy, the geometry of caffeine molecule was optimized by density functional theory (DFT) calculation. By comparing the SERS of caffeine with its normal spectra at different pH values; it is concluded that pH value can dramatically affect the SERS of caffeine, but barely affect the normal Raman spectrum of caffeine aqueous solution. It can essentially affect the reorientation of caffeine molecule to the Ag colloid surface, but cannot impact the vibration of functional groups and chemical bonds in caffeine molecule.