7‐Phenyl‐1‐oxa‐4‐thiaspiro[4.5]decan‐7‐ol stereoisomers

The stereoisomers of 7‐phenyl‐1‐oxa‐4‐thia­spiro­[4.5]­decan‐7‐ol, C₁₄H₁₈O₂S, have the same stereochemistry at the C atom bearing an OH group, i.e. axial OH and equatorial phenyl groups. However, the acetal S and O atoms are axial and equatorial, respectively, in one isomer and reversed in the second. Furthermore, the crystals of one isomer are composed of hydrogen‐bonded mol­ecules involving the hydroxyl H atom and the O atom of the five‐membered heterocyclic ring, with an O?O distance of 2.962 (3) Å, forming a polymeric chain along the b axis. The asymmetric unit of the other isomer is composed of two mol­ecules, wherein hydroxyl H atoms and the O atoms of the five‐membered heterocyclic rings display intramolecular O—H?O hydrogen bonds with O?O separations of 2.820 (2) and 2.834 (2) Å.     

2,2′‐Anhydro‐1‐(3′,5′‐di‐O‐acetyl‐β‐D‐arabinofuranosyl)uracil,a cyclouridine nucleoside with a C4′‐endo furanosyl conformation

2,2′‐Anhydro‐1‐(3′,5′‐di‐O‐acetyl‐β‐D‐arabinofuranosyl)uracil, C₁₃H₁₄N₂O₇, was obtained by refluxing 2′,3′‐O‐(methoxymethylene)uridine in acetic anhydride. The structure exhibits a nearly perfect C4′‐endo (⁴E) conformation. The best four‐atom plane of the five‐membered furanose ring is O—C—C—C, involving the C atoms of the fused five‐membered oxazolidine ring, and the torsion angle is only −0.4 (2)°. The oxazolidine ring is essentially coplanar with the six‐membered uracil ring [r.m.s. deviation = 0.012 (5) Å and dihedral angle = −3.2 (3)°]. The conformation at the exocyclic C—C bond is gauche–trans which is stabilized by various C—H...π and C—O...π interactions.     

tert‐Butyl (3S,6R,9R)‐(5‐oxo‐3‐{[1(R)‐phenyl­ethyl]­carbamoyl}‐1,2,3,5,6,7,8,8a‐octa­hydro­indolizin‐6‐yl)­carbamate monohydrate at 95 K

The asymmetric unit of the title compound, C₂₂H₃₁N₃O₄·H₂O, incorporates one water mol­ecule, which is hydrogen bonded to the 3‐oxo O atom of the indolizidinone system. The two rings of the peptidomimetic mol­ecule are trans‐fused, with the six‐membered ring having a slightly distorted half‐chair conformation and the five‐membered ring having a perfect envelope conformation. The structure is stabilized by intermolecular O—H?O interactions between the water and adjacent peptide mol­ecules, and by N—H?O interactions between the peptide mol­ecules, which link the mol­ecules into infinite chains.     

(2‐Amino­ethoxy)­bis(2‐thienyl)­boron

In the five‐membered ring in the title compound, (2‐amino­ethoxy)­bis(2‐thienyl)­boron, C₁₀H₁₂BNOS_2, the B atom is four‐coordinate with dimensions N—B 1.654 (3), O—B 1.479 (3), and C—B 1.606 (3) and 1.609 (3) Å. An intermolecular hydrogen bond between an amino H atom and the ethoxy O atom links the mol­ecules into infinite chains along the a axis. Only one of the two amino H atoms is involved in hydrogen bonding because there is only the one acceptor atom, the ethoxy O atom, and the molecular geometry precludes formation of a second hydrogen bond by the second amino H atom.     

Intra‐ and intermolecular Se...X (X = Se,O) interactions in selenium‐containing heterocycles: 3‐benzoylimino‐5‐(morpholin‐4‐yl)‐1,2,4‐diselenazole

In the selenium‐containing heterocyclic title compound {systematic name: N‐[5‐(morpholin‐4‐yl)‐3H‐1,2,4‐diselenazol‐3‐ylidene]benzamide}, C₁₃H₁₃N₃O₂Se₂, the five‐membered 1,2,4‐diselenazole ring and the amide group form a planar unit, but the phenyl ring plane is twisted by 22.12 (19)° relative to this plane. The five consecutive N—C bond lengths are all of similar lengths [1.316 (6)–1.358 (6) Å], indicating substantial delocalization along these bonds. The Se...O distance of 2.302 (3) Å, combined with a longer than usual amide C=O bond of 2.252 (5) Å, suggest a significant interaction between the amide O atom and its adjacent Se atom. An analysis of related structures containing an Se—Se...X unit (X = Se, S, O) shows a strong correlation between the Se—Se bond length and the strength of the Se...X interaction. When X = O, the strength of the Se...O interaction also correlates with the carbonyl C=O bond length. Weak intermolecular Se...Se, Se...O, C—H...O, C—H...π and π–π interactions each serve to link the molecules into ribbons or chains, with the C—H...O motif being a double helix, while the combination of all interactions generates the overall three‐dimensional supramolecular framework.     

Why Are Selenouracils as Basic as but Stronger Acids than Uracil in the Gas Phase?

The gas‐phase basicity and acidity of 2‐selenouracil ( 2SU ), 4‐selenouracil ( 4SU ), and 2,4‐diselenouracil ( 24SU ) have been calculated at the B3LYP/6‐311+G(3df,2p) level of theory. Our results showed that all these compounds behave as bases of moderate strength in the gas phase. As was found for uracil and for the thiouracil analogues, the most basic site is the heteroatom at position 4, and only for 2SU is there a certain ambiguity in assigning the basic site. More importantly, with the only exception of 2SU , selenouracils are as basic as or slightly less basic than uracil, because the replacement of the oxygen atom at position 2 by a selenium atom leads to an increase of the electron delocalization inside the six‐membered ring, which decreases the intrinsic basicity of the heteroatom at position 4. As already reported for uracil and thiouracils, for selenouracils N1 is the most acidic site. However, selenouracils are predicted to be stronger acids than uracil. This acidity enhancement is essentially due to a specific stabilization of the anion when O is replaced by Se. Two factors are responsible for this stabilization: a significant aromatization of the ring upon deprotonation and a better dispersion of the excess electron density when the system contains third‐row atoms.     

Synthesis,structural characterization and cytotoxic activity of triorganotin 5‐(salicylideneamino)salicylates

Six new triorganotin complexes ( 1a – 1c and 2a – 2c ) of 5‐(salicylideneamino)salicylic acid, [5‐(3‐X‐2‐HOC₆H₃CH═N)‐2‐HOC₆H₃COO]SnR₃ (X = H, 1 ; CH₃O, 2 ; R = Ph, a ; Cy, b ; CH₂C(CH₃)₂Ph, c ), have been synthesized by one‐pot reaction of 5‐aminosalicylic acid, salicylaldehyde and triorganotin hydroxide and characterized using elemental analysis and infrared and NMR (¹H, ¹³C and ¹¹⁹Sn) spectra. The crystal structures of 1a , 1b , 2a ·CH₃OH, 2b ·CH₃OH and 2c ·CHCl₃ have been determined using single‐crystal X‐ray diffraction. In non‐coordinated solvent CDCl₃, the tin atoms in the complexes are all four‐coordinated. In the crystalline state, these compounds adopt a four‐ or five‐coordination mode. Complex 1a exhibits a 44‐membered macrocyclic tetrameric structure with trigonal bipyramidal geometry around the tin atoms in which the axial positions are occupied by the oxygen atom of carboxylate group of the ligand and the phenolic oxygen atom from the adjacent ligand. The coordination geometry of tin atom in 1b and 2c ·CHCl₃ is a distorted tetrahedron shaped by three carbon atoms of alkyl groups and a carboxylate oxygen atom of the ligand. In 2a ·CH₃OH and 2b ·CH₃OH, the tin atom has a distorted trans‐C₃SnO₂ trigonal bipyramidal geometry formed by three alkyl groups, a monodentate carboxylate group and a coordinated methanol molecule. The molecules of 2a ·CH₃OH and 2b ·CH₃OH are linked via O─H···O hydrogen bonds into a one‐dimensional supramolecular chain and a centrosymmetric R₄⁴(22) macrocycle, respectively. Bioassay results against two human tumor cell types (A549 and HeLa) show the complexes are efficient cytostatic agents and may be explored as potential antitumor drugs.     

Germanates of 1D Chains, 2D Layers,and 3D Frameworks Built from Ge–O Clusters by Using Metal‐Complex Templates: Host–Guest Symmetry and Chirality Transfer

The self‐assembly of Ge–O polyhedra by metal‐complex templates leads to initial examples of open germanate structures under mild solvothermal conditions. These materials are constructed from Ge–O cluster building bocks (Ge₇X₁₉ (X=O, OH, or F) or Ni@Ge₁₄O₂₄(OH)₃) and span the full range of dimensionalities from 1D chains of Ge₇O₁₃(OH)₂F₃?Cl?2[Ni(dien)₂] (FJ‐ 6 ) to 2D layers of Ge₇O₁₄F₃?0.5[In(dien)₂]?0.5H₃dien? 2H₂O ( 1 ) and 3D frameworks of Ni@ Ge₁₄O₂₄(OH)₃?2[Ni(L)₃] (FJ‐ 1 a /FJ‐ 1 b ) (dien=diethylenetriamine, L=ethylenediamine (en) or 1,2‐diaminopropane (enMe)). The Ge₇X₁₉ cluster in FJ‐ 6 and 1 is formed by condensation of four GeX₄ tetrahedra, two GeX₅ trigonal bipyramids, and one GeX₆ octahedron with a μ₃‐O atom at the center of the cluster, whereas the Ni@ Ge₁₄O₂₄(OH)₃ cluster in FJ‐ 1 a /FJ‐ 1 b is formed by condensation of nine peripheral GeO₄ tetrahedra and five interior GeO₃Ni units with one μ₅‐Ni atom at the center of the cluster. FJ‐ 6 is characterized by a pair of racemic Ge₇O₁₄(OH)₂F₃ cluster chains and represents only one example of 1D germanates; 1 exhibits unique germanate layers with uniform 10‐membered‐ring apertures encapsulating an unknown indium complex, and the framework structure of FJ‐ 1 a /FJ‐ 1 b with large 24‐membered‐ring channels is the first example of porous materials that contain metal–metal bonds (Ge²⁺? Ni⁺). These initial examples of germanates from metal‐complex templates provide a useful model system for understanding the mechanisms of host–guest interactions, which may further facilitate the design and development of new porous materials “on demand”. It is shown that the symmetry and configuration of the guest metal complex can be imprinted onto the host inorganic framework through hydrogen bonding between host and guest.     

Rhenium chemistry of azooximes: oxygen atom transfer, azoimine chelation, and imine-oxime contrast

The concerned azooximes (L1OH, 1) are of type p-X-C6H4C(N2Ph)(NOH) (X = H, Me, Cl). The reaction of [Re(MeCN)Cl3(PPh3)2] with [Ag(L1OH)(L1O)] in cold dichloromethane-acetonitrile solvent has furnished the green colored ionized azoimine complex [ReV(O)Cl(PPh3)2(L1)](PF6), 2. In effect L1O- has undergone oxidative addition, the oxygen atom being transferred to the metal site. Upon treatment of [ReV(NPh)Cl3(PPh3)2] with L1OH in solution, the neutral azoimine complex [ReV(NPh)Cl3(L1H)], 3, resulted due to the spontaneous transfer of the oxime oxygen atom to a PPh3 ligand, which is eliminated as OPPh3. In contrast, the oxime of 2-acetylpyridine (L2OH, 4) did not undergo oxygen atom transfer and simply afforded the imine-oxime complex [ReV(NC6H4Y)Cl2(PPh3)(L2O)], 5, upon reacting with [ReV(NC6H4Y)Cl3(PPh3)2] (Y = H, Me, Cl). The spectral and electrochemical properties of 2, 3, and 5 and the structures of three representative compounds are reported. In the cation of 2 (X = H) the two PPh3 ligands lie trans to each other and the equatorial plane is defined by the five-membered azoimine chelate ring and the oxo and chloro ligands. The oxo ligand which forms a model triple bond (Re-O length 1.616(6) A) lies cis to the imine-N atom. In 3 (X = Cl) the ReCl3 fragment has meridional geometry and the imido nitrogen lies trans to the imine nitrogen of the planar azoimine chelate ring. In 5 x H2O (Y = Me), the Cl, oximato-N, and P atoms define an equatorial plane and the pyridine-N lies trans to the imido-N. The water of crystallization is hydrogen bonded to the oximato oxygen atom (O...O, 2.829(5) A). Reaction models in which chelation of the azooxime precedes oxygen atom transfer are proposed on the basis of oxophilicity of trivalent rhenium, Lewis acid activity of pentavalent rhenium, electron withdrawal by the azo group, and observed relative disposition of ligands in products.     

How the oxazole fragment influences the conformation of the tetraoxazocane ring in a cyclohexanespiro‐3′‐(1,2,4,5,7‐tetraoxazocane): single‐crystal X‐ray and theoretical study

Single crystals of (2S,5R)‐2‐isopropyl‐5‐methyl‐7‐(5‐methylisoxazol‐3‐yl)cyclohexanespiro‐3′‐(1,2,4,5,7‐tetraoxazocane), C₁₆H₂₆N₂O₅, have been studied via X‐ray diffraction. The tetraoxazocane ring adopts a boat–chair conformation in the crystalline state, which is due to intramolecular interactions. Conformational analysis of the tetraoxazocane fragment performed at the B3LYP/6‐31G(d,2p) level of theory showed that there are three minima on the potential energy surface, one of which corresponds to the conformation realized in the solid state, but not to a global minimum. Analysis of the geometry and the topological parameters of the electron density at the (3,?1) bond critical points (BCPs), and the charge transfer in the tetraoxazocane ring indicated that there are stereoelectronic effects in the O—C—O and N—C—O fragments. There is a two‐cross hyperconjugation in the N—C—O fragment between the lone electron pair of the N atom (lpN) and the antibonding orbital of a C—O bond (σ*_C—O) and vice versa between lpO and σ*_C—N. The oxazole substituent has a considerable effect on the geometry and the topological parameters of the electron density at the (3,?1) BCPs of the tetraoxazocane ring. The crystal structure is stabilized via intermolecular C—H…N and C—H…O hydrogen bonds, which is unambiguously confirmed with PIXEL calculations, a quantum theory of atoms in molecules (QTAIM) topological analysis of the electron density at the (3,?1) BCPs and a Hirshfeld analysis of the electrostatic potential. The molecules form zigzag chains in the crystal due to intermolecular C—H…N interactions being electrostatic in origin. The molecules are further stacked due to C—H…O hydrogen bonds. The dispersion component in the total stabilization energy of the crystal lattice is 68.09%.     

Metal‐Free Hydrogen Atom Transfer from Water: Expeditious Hydrogenation of N‐Heterocycles Mediated by Diboronic Acid

A hydrogenation of N‐heterocycles mediated by diboronic acid with water as the hydrogen atom source is reported. A variety of N‐heterocycles can be hydrogenated with medium to excellent yields within 10 min. Complete deuterium incorporation from stoichiometric D₂O onto substrates further exemplifies the H/D atom sources. Mechanism studies reveal that the reduction proceeds with initial 1,2‐addition, in which diboronic acid synergistically activates substrates and water via a six‐membered ring transition state.     

2,3:4,6‐Di‐O‐isopropylidene‐α‐l‐sorbofuranose and 2,3‐O‐isopropylidene‐α‐l‐sorbofuranose

In the title compounds, C₁₂H₂₀O₆, (I), and C₉H₁₆O₆, (II), the five‐membered furanose ring adopts a ⁴T₃ conformation and the five‐membered 1,3‐dioxolane ring adopts an E₃ conformation. The six‐membered 1,3‐dioxane ring in (I) adopts an almost ideal ^OC₃ conformation. The hydrogen‐bonding patterns for these compounds differ substantially: (I) features just one intramolecular O—H...O hydrogen bond [O...O = 2.933 (3) Å], whereas (II) exhibits, apart from the corresponding intramolecular O—H...O hydrogen bond [O...O = 2.7638 (13) Å], two intermolecular bonds of this type [O...O = 2.7708 (13) and 2.7730 (12) Å]. This study illustrates both the similarity between the conformations of furanose, 1,3‐dioxolane and 1,3‐dioxane rings in analogous isopropylidene‐substituted carbohydrate structures and the only negligible influence of the presence of a 1,3‐dioxane ring on the conformations of furanose and 1,3‐dioxolane rings. In addition, in comparison with reported analogs, replacement of the –CH₂OH group at the C1‐furanose position by another group can considerably affect the conformation of the 1,3‐dioxolane ring.     

Three different fluoro‐ or chloro‐substituted 1′‐deoxy‐1′‐phenyl‐β‐D‐ribofuranoses

Crystal structures are reported for three fluoro‐ or chloro‐substituted 1′‐deoxy‐1′‐phenyl‐β‐D‐ribofuranoses, namely 1′‐deoxy‐1′‐(2,4,5‐trifluorophenyl)‐β‐D‐ribofuranose, C₁₁H₁₁F₃O₄, (I), 1′‐deoxy‐1′‐(2,4,6‐trifluorophenyl)‐β‐D‐ribofuranose, C₁₁H₁₁F₃O₄, (II), and 1′‐(4‐chlorophenyl)‐1′‐deoxy‐β‐D‐ribofuranose, C₁₁H₁₃ClO₄, (III). The five‐membered furanose ring of the three compounds has a conformation between a C2′‐endo,C3′‐exo twist and a C2′‐endo envelope. The ribofuranose groups of (I) and (III) are connected by intermolecular O—H...O hydrogen bonds to six symmetry‐related molecules to form double layers, while the ribofuranose group of (II) is connected by O—H...O hydrogen bonds to four symmetry‐related molecules to form single layers. The O...O contact distance of the O—H...O hydrogen bonds ranges from 2.7172 (15) to 2.8895 (19) Å. Neighbouring double layers of (I) are connected by a very weak intermolecular C—F...π contact. The layers of (II) are connected by one C—H...O and two C—H...F contacts, while the double layers of (III) are connected by a C—H...Cl contact. The conformations of the molecules are compared with those of seven related molecules. The orientation of the benzene ring is coplanar with the H—C1′ bond or bisecting the H—C1′—C2′ angle, or intermediate between these positions. The orientation of the benzene ring is independent of the substitution pattern of the ring and depends mainly on crystal‐packing effects.     

Cyclotridecanone 2,4‐dinitrophenylhydrazone

In cyclotridecanone 2,4‐dinitrophenylhydrazone, C₁₉H₂₈N₄O₄, the 13‐membered carbocycle exists in the triangular [337] conformation. The 2,4‐dinitrophenylhydrazone group is almost perpendicular to the 13‐membered ring, with a dihedral angle of 82.66 (2)° between the mean planes. The dinitrophenylhydrazone rings are packed parallel to each other and separated by 3.28 (1) Å. The NH group forms an intramolecular hydrogen bond to a nitro O atom, and there is a weaker C—H...O interaction between a cyclotridecane CH group and a symmetry‐related 4‐nitro O atom, with a C...O distance of 3.436 (2) Å and a 150° angle about the H atom. The structure, in combination with additional evidence, indicates that [337] is the preferred conformation of cyclotridecane and other simple 13‐membered rings.     

On the Synthesis,Characterization and Reactivity of N‐Heteroaryl–Boryl Radicals,a New Radical Class Based on Five‐Membered Ring Ligands

The synthesis and physical characterization of a new class of N‐heterocycle–boryl radicals is presented, based on five membered ring ligands with a N(sp²) complexation site. These pyrazole–boranes and pyrazaboles exhibit a low bond dissociation energy (BDE; B?H) and accordingly excellent hydrogen transfer properties. Most importantly, a high modulation of the BDE(B?H) by the fine tuning of the N‐heterocyclic ligand was obtained in this series and could be correlated with the spin density on the boron atom of the corresponding radical. The reactivity of the latter for small molecule chemistry has been studied through the determination of several reaction rate constants corresponding to addition to alkenes and alkynes, addition to O₂, oxidation by iodonium salts and halogen abstraction from alkyl halides. Two selected applications of N‐heterocycle–boryl radicals are also proposed herein, for radical polymerization and for radical dehalogenation reactions.     

Crystal Structure and Solid‐State 13C NMR of Methyl α‐d‐Mannofuranoside

The crystal structure of methyl α‐d‐mannofuranoside was determined by X‐ray crystallography. The C‐1–C‐2, C‐2–C‐3, C‐3–C‐4, C‐4–O and O‐4–C‐1 distances within the furanoside ring are 1.513(2), 1.523(2), 1.516(2), 1.445(2) and 1.422(2) Å, respectively. The hydrogen bonding consists of O–H–O interactions which include the anomeric oxygen but exclude the ring oxygen atom. The two hydroxyls OH‐6 and OH‐2 are H‐bond acceptors and donors with H···O distances of 1.92–1.93 Å, whereas the OH‐3 and OH‐5 are only H‐bond donor [H···O distance of 2.04(2) Å]. Additionally, OH‐6 participates in a weak hydrogen bond to the anomeric oxygen [H···O distance of 2.19(3) Å]. The crystalline methyl α‐d‐mannofuranoside adopts an ³ E ring conformation. The analysis of ¹³C CPMAS NMR chemical shifts for solid methyl α‐d‐mannofuranoside confirm such H‐bonding pattern.     

Hydrolysis of cyclic phosphoramides. Evidence for syn lone pair catalysis

Hydrolysis between 1.5 < pH < 4 of five and six membered cyclic phosphoramides has been followed by UV and 3'PNMR spectroscopy. The observed rates fit the equation: k(obs) = k(H2O) [H+]/([H+] + Ka) + k'(H2O), where k(H2O) and k'(H2O) are the pseudo first-order rate constants of water attack on the protonated phosphoramide and its unprotonated form, respectively, and Ka is the phosphoramide acidity equilibrium constant. Although, faster hydrolysis rates on the five membered ring are expected due to the energy released in going from a strained cyclic to a "strained free" trigonal-bipyramidal-pentacoordinated intermediate, with one of the cyclic nitrogens occupying the apical position. these compounds react slightly faster (k(H2O) values) but slower regarding the k'(H2O) values than the six membered analogs. The balance in reactivity is attributed to the additional stability obtained in the six membered cyclic compounds by a syn orientation of the two lone pairs of the cyclic nitrogen to the water attack. This stabilization does not exist in the five membered phospholidines since the water attack is perpendicular to the electron pairs of the cyclic nitrogen. In agreement with the incoming water orientation, the product ratios from the hydrolysis show that in the five membered rings the main product is the one produced by endocyclic cleavage; meanwhile, in the six membered cyclic phospholines the kinetic product is the one produced by exocyclic cleavage. The syn orientation of two electron pairs on nitrogen stabilizes the transition state of water approach to the phosphoramides by ca. 3 kcal mol(-1) when compared to the orthogonal attack.     

Hydrogen‐Bonding in Cyclic 2‐(3‐Oxo‐3‐phenylpropyl)‐Substituted 1,3‐Diketones: 17O‐NMR Spectra and X‐Ray Structure Determination

Structures of cyclic 2‐(3‐oxo‐3‐phenylpropyl)‐substituted 1,3‐diketones 4a – c were determined by ¹⁷O‐NMR spectroscopy and X‐ray crystallography. In CDCl₃ solution, compounds 4a – c form an eight‐membered‐ring with intramolecular H‐bonding between the enolic OH and the carbonyl O(11)‐atom of the phenylpropyl group, as demonstrated by increased shielding of specifically labeled 4a – c in the ¹⁷O‐NMR spectra (Δδ(¹⁷O(11))=36 ppm). In solid state, intermolecular H‐bonding was observed instead of intramolecular H‐bonding, as evidenced by the X‐ray crystal‐structure analysis of compound 4b . Crystals of compound 4b at 293 K are monoclinic with a=11.7927 (12) Å, b=13.6230 (14) Å, c=9.8900 (10) Å, β=107.192 (2)°, and the space group is P2₁/c with Z=4 (refinement to R=0.0557 on 2154 independent reflections).     

The coordination complex structures and hydrogen bonding in the three‐dimensional alkaline earth metal salts (Mg,Ca, Sr and Ba) of (4‐aminophenyl)arsonic acid

(4‐Aminophenyl)arsonic acid (p‐arsanilic acid) is used as an antihelminth in veterinary applications and was earlier used in the monosodium salt dihydrate form as the antisyphilitic drug atoxyl. Examples of complexes with this acid are rare. The structures of the alkaline earth metal (Mg, Ca, Sr and Ba) complexes with (4‐aminophenyl)arsonic acid (p‐arsanilic acid) have been determined, viz. hexaaquamagnesium bis[hydrogen (4‐aminophenyl)arsonate] tetrahydrate, [Mg(H₂O)₆](C₆H₇AsNO₃)·4H₂O, (I), catena‐poly[[[diaquacalcium]‐bis[μ₂‐hydrogen (4‐aminophenyl)arsonato‐κ²O :O ′]‐[diaquacalcium]‐bis[μ₂‐hydrogen (4‐aminophenyl)arsonato‐κ²O :O ]] dihydrate], {[Ca(C₆H₇AsNO₃)₂(H₂O)₂]·2H₂O}_n , (II), catena‐poly[[triaquastrontium]‐bis[μ₂‐hydrogen (4‐aminophenyl)arsonato‐κ²O :O ′]], [Sr(C₆H₇AsNO₃)₂(H₂O)₃]_n , (III), and catena‐poly[[triaquabarium]‐bis[μ₂‐hydrogen (4‐aminophenyl)arsonato‐κ²O :O ′]], [Ba(C₆H₇AsNO₃)₂(H₂O)₃]_n , (IV). In the structure of magnesium salt (I), the centrosymmetric octahedral [Mg(H₂O)₆]²⁺ cation, the two hydrogen p‐arsanilate anions and the four water molecules of solvation form a three‐dimensional network structure through inter‐species O—H and N—H hydrogen‐bonding interactions with water and arsonate O‐atom and amine N‐atom acceptors. In one‐dimensional coordination polymer (II), the distorted octahedral CaO₆ coordination polyhedron comprises two trans‐related water molecules and four arsonate O‐atom donors from bridging hydrogen arsanilate ligands. One bridging extension is four‐membered via a single O atom and the other is eight‐membered via O :O ′‐bridging, both across inversion centres, giving a chain coordination polymer extending along the [100] direction. Extensive hydrogen‐bonding involving O—H…O, O—H…N and N—H…O interactions gives an overall three‐dimensional structure. The structures of the polymeric Sr and Ba complexes (III) and (IV), respectively, are isotypic and are based on irregular M O₇ coordination polyhedra about the M ²⁺ centres, which lie on twofold rotation axes along with one of the coordinated water molecules. The coordination centres are linked through inversion‐related arsonate O :O ′‐bridges, giving eight‐membered ring motifs and forming coordination polymeric chains extending along the [100] direction. Inter‐chain N—H…O and O—H…O hydrogen‐bonding interactions extend the structures into three dimensions and the crystal packing includes π–π ring interactions [minimum ring centroid separations = 3.4666 (17) Å for (III) and 3.4855 (8) Å for (IV)].     

Intramolecular O―H⋯O and C―H⋯O hydrogen bond cooperativity in D‐glucopyranose and D‐galactopyranose—A DFT/GIAO,QTAIM/IQA,and NCI approach

Density functional theory calculations are used to compute proton nuclear magnetic resonance (NMR) chemical shifts, interatomic distances, atom–atom interaction energies, and atomic charges for partial structures and conformers of α‐D‐glucopyranose, β‐D‐glucopyranose, and α‐D‐galactopyranose built up by introducing OH groups into 2‐methyltetrahydropyran stepwisely. For the counterclockwise conformers, the most marked effects on the NMR shift and the charge on the OH1 proton are produced by OH2, those of OH3 and OH4 being somewhat smaller. This argues for a diminishing cooperative effect. The effect of OH6 depends on the configuration of the hydroxymethyl group and the position, axial or equatorial, of OH4, which controls hydrogen bonding in the 1,3‐diol motif. Variations in the interaction energies reveal that a “new” hydrogen bond is sometimes formed at the expense of a preexisting one, probably due to geometrical constraints. Whereas previous work showed that complexing a conformer with pyridine affects only the nearest neighbour, successive OH groups increase the interaction energy of the N⋯H1 hydrogen bond and reduce its length. Analogous results are obtained for the clockwise conformers. The interaction energies for C―H⋯OH hydrogen bonding between axial CH protons and OH groups in certain conformers are much smaller than for O―H⋯OH bonds but they are largely covalent, whereas those of the latter are predominantly coulombic. These interactions are modified by complexation with pyridine in the same way as O―H⋯OH interactions: the computed NMR shifts of the CH protons increase, the atom–atom distances are shorter, and interaction energies are enhanced.