复合物HNO···H2O2内N-H···O蓝移氢键的理论研究

A theoretical study on the blue-shifted H-bond N-H…O and red-shifted H-bond O-H…O in the complexHNO…H_2O_2 was conducted by employment of both standard and counterpoise-corrected methods to calculate thegeometric structures and vibrational frequencies at the MP2/6-31G(d),MP2/6-31 G(d,p),MP2/6-311 q G(d,p),B3LYP/6-31G(d),B3LYP/6-31 G(d,p) and B3LYP/6-311 G(d,p) levels.In the H-bond N-H…O,the calcu-lated blue shift of N-H stretching frequency is in the vicinity of 120 cm~(-1) and this is indeed the largest theoreticalestimate of a blue shift in the X-H…Y H-bond ever reported in the literature.From the natural bond orbital analy-sis,the red-shifted H-bond O-H…O can be explained on the basis of the dominant role of the hyperconjugation.For the blue-shifted H-bond N-H…O,the hyperconjugation was inhibited due to the existence of significant elec-tron density redistribution effect,and the large blue shift of the N-H stretching frequency was prominently due tothe rehybridization of sp~n N-H hybrid orbital.     

Das LiPH2 ·1 Monoglym

The LiPH₂ ·1 Monoglyme A convenient synthesis of the crystalline LiPH₂ · 1 monoglyme is reported by metallating PH₃ with n-butyllithium in monoglyme (86% yield relative to n-butyllithium). LiPH₂ · 1 monoglyme is stable at room temperature and reasonably soluble in thf, mono-, di-, and triglyme. On pumping (oil pump) it decomposes to “Li₂PH” liberating PH₃ and monoglyme. “Li₂PH” is insoluble in the above mentioned solvents.     

A theoretical investigation about the excited state behavior for 2‐(6'‐hydroxy‐2'‐pyridyl)benzimidazole: The water‐assisted excited state proton transfer process

In this work, based on density functional theory (DFT) and time‐dependent DFT (TD‐DFT) methods, we theoretically investigate the excited‐state process of the 2‐(6'‐hydroxy‐2'‐pyridyl)benzimidazole (2HPB) system in acetonitrile and water solvents. Since acetonitrile is an aprotic solvent, it has no effect on the solvent‐assisted excited‐state proton transfer (ESPT) process. Therefore, the 2HPB molecule cannot transfer the proton in acetonitrile, which is consistent with previous experimental observation. On the other hand, 2HPB can combine one water molecule (which is a protic solvent), forming the 2HPB–H₂O complex in the S₀ state. After photoexcitation, the intermolecular hydrogen bonds O1 H2···O3 and O3 H4···N5 both get strengthened in the S₁ state, which leads to the possibility of a water‐assisted ESPT process. Further, the charge redistribution reveals the tendency of ESPT. By exploring the potential energy curves for the 2HPB–H₂O complex in water, we confirm that a stepwise double proton transfer process occurs in the S₁ state. Water‐assisted ESIPT can occur along O1 H2···O3 or O3 H4···N5 because of their similar potential barriers. Based on the stepwise ESPT mechanism, we reinterpret the absorption and fluorescence spectra mentioned in the experiments and confirm the rationality of the water‐assisted ESPT process.     

Quantum chemical study of the hydrogen‐bonded patterns in A · T base pair of DNA: Origins of tautomeric mispairs,base flipping,and Watson–Crick ⇒ Hoogsteen conversion

The current work aims to thoroughly investigate a variety of facets of the hydrogen‐bond pattern of the Watson–Crick A · T base pair of DNA. It offers a novel mechanism of the origin of the hydrogen‐bonded mispairing in the A · T base pair based on the analysis of the lower‐energy portion of the total potential energy surface of all possible rearrangements of the hydrogen‐bond patterns in this pair, performed at the Hartree–Fock (HF), second‐order Moller–Plesset (MP2)//HF, and B3LYP computational levels in conjunction with 6‐31+G(d) basis set. The specific novelty of this mechanism is that the primary step consists of a single proton transfer along the N₃(T)–H … N₁ (A) hydrogen bond, thus leading to a transition state that is not directly related to the proton transfer. Rather, it governs the interbase shift within the A · T pair switching the hydrogen‐bonded pattern and then separating the normal A · T pair from the mispairing valley on its potential energy surface. The latter comprises three mismatched base pairs, easily converted to each other because of lower barriers (≈1 kcal/mol) of the corresponding proton transfers. It is demonstrated that, in terms of the Gibbs free energy taken at room T = 298.15 K, the most stable mispair in such valley is predicted to be less stable by 9.7 ± 2 kcal/mol than the Watson–Crick pair, thus implying that the spontaneous point mutations of this type occur as infrequently as to be characterized by an equilibrium constant of 10^?6 to 10^?9. This estimate falls into the well‐known experimental range of mutation frequency per base pair. The structure of a so‐called “base flipping” of the A · T base pair, originated from a breaking of its N₃(T)‐H … N₁ (A) hydrogen bond, is also found and reported in the current work for the first time. The transition state A · T ${}_{\text{ts}}^{\text{WC?H}}$ , which governs the conversion of the Watson–Crick pair of adenine · thymine into the Hoogsteen one and is related to a breaking of the N₆(A)–H … O₄(T), is also obtained and its energetical and geometrical features are discussed. © 2003 Wiley Periodicals, Inc. Int J Quantum Chem, 2003     

Studies of two different types of intramolecular C–H···F–C interactions from polyfluorinated diiodometal(II) diimine complexes

The X‐ray crystal structures of the polyfluorinated complexes [5,5′‐bis(HCF₂CF₂CF₂CF₂CH₂OCH₂)‐2,2′‐bpy]MI₂ ( 55‐8F‐PtI ₂ and 55‐8F‐PdI ₂ where M = Pt and Pd, respectively) were obtained. These two structures are found to show not only two different types of intramolecular, six‐membered cyclic C–H···F–C interactions (F₂C–H···F–C and HC–H···F–C) as important structural features but also alternating fluorinated and non‐fluorinated layers. The F₂C–H···F–C interactions, which are close to the metal core, are much better structurally characterized in this type of complexes with fluorous ponytails at the 5,5′ positions than those previously reported at the 4,4′ positions. The molecular planes of (bpy)MI₂ are extended by self‐matching, using two C–H···I hydrogen bonds and one C–H···F–C blue‐shifting hydrogen bond. The F₂C–H···F–C hydrogen bonds interact at the supramolecular level such that one polyfluorinated ponytail of the title compounds is transoid without an intramolecular C–H···F–C interaction, while the other polyfluorinated ponytail is cisoid with an intramolecular C–H···F–C interaction. Why one ponytail is cisoidal while the other is transoidal will be explained. Furthermore, the second type of C–H···F–C interactions involving the methylene H atom has been identified for the first time. In addition, these two metal structures are studied by density functional theory (DFT).     

Theoretical insights into the excited‐state process of 4‐tert‐butyl‐2‐(5‐(5‐tert‐butyl‐2‐methoxyphenyl)thiazolo[5,4‐d]thiazol‐2‐yl)‐phenol

In this paper, we theoretically explore the motivation and behaviors of the excited‐state intramolecular proton transfer (ESIPT) reaction for a novel white organic light‐emitting diode (WOLED) material 4‐tert‐butyl‐2‐(5‐(5‐tert‐butyl‐2‐methoxyphenyl)thiazolo[5,4‐d]thiazol‐2‐yl)‐phenol (t‐MTTH). The “atoms in molecules” (AIM) method is adopted to verify the formation and existence of the hydrogen bond O? H···N. By analyzing the excited‐state hydrogen bonding behaviors via changes in the chemical bonding and infrared (IR) vibrational spectra, we confirm that the intramolecular hydrogen bond O? H···N should be getting strengthened in the first excited state in four kinds of solvents, thus revealing the tendency of ESIPT reaction. Further, the role of charge‐transfer interaction is addressed under the frontier molecular orbitals (MOs), which depicts the nature of the electronic excited state and supports the ESIPT reaction. Also, the electron distribution confirms the ESIPT tendency once again. The scanned and optimized potential energy curves according to variational O? H coordinate in the solvents demonstrate that the proton transfer reaction should occur in the S₁ state, and the potential energy barriers along with ESIPT direction support this reaction. Based on the excited‐state behaviors reported in this work, the experimental spectral phenomenon has been reasonably explained.     

N2O…HOCl复合物结构和性质的理论研究

分别在DFT-B3LYP和MP2/6-311++G**水平上求得HOCl + N2O复合物势能面上的六种(S1, S2, S3, S4, S5和S6)和四种(S1, S2, S4和S5)构型. 频率分析表明,其中的S1和S3为过渡态,其它为稳定构型. 在复合物S3, S5 和S6中,HOCl 单体的σ*(5O-6H)作为质子供体,与N2O单体中作为质子受体的3O原子相互作用,形成氢键结构,而在氢键复合物S2中, 质子受体为N2O单体中的端1N原子;复合物S1中,HOCl分子的σ*(5O-4Cl)作为质子供体与N2O分子中的端1N原子(质子受体)相互作用,形成卤键结构,而复合物S4中的卤键结构的质子受体为N2O分子中的端3O原子. 经B3LYP/6-311++G**水平上的计算,考虑了基组重叠误差(BSSE)校正的单体间相互作用能在-1.56 ~ -8.73 kJ·mol-1之间. 采用自然键轨道理论(NBO)对两种单体间相互作用的本质进行了考查,并通过分子中原子理论(AIM)分析了复合物中氢键和卤键键鞍点处的电子密度拓扑性质.     

Hydrogen bonding characterization of XH2NH2···HNO(X = B,Al, Ga) complexes: A theoretical investigation

The complexes of XH₂NH₂···HNO(X = B, Al, Ga) are characterized as head to tail with hydrogen bonding interactions. The structural characteristics can be confirmed by atoms in molecules (AIM) analysis, which also provide comparisons of hydrogen bonds strengths. The calculated interaction energies at G2MP2 level show that stability of complexes decrease as BH₂NH₂···HNO > AlH₂NH₂···HNO > GaH₂NH₂···HNO. On the basis of the vibrational frequencies calculations, there are red‐shifts for ν(X1? H) and blue‐shifts for ν(N? H) in the complexes on dihydrogen bonding formations (X1? H···H? N). On hydrogen bonding formations (N? H···O), there are red‐shifts for ν(N? H) compared to the monomers. Natural bond orbital (NBO) analysis is used to discuss the reasons for the ν(X1? H) and ν(N? H) stretching vibrational shifts by hyperconjugation, electron density redistribution, and rehybridization. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

Basic ionic liquid/FeCl3·6H2O as an efficient catalyst for AGET ATRP of methyl methacrylate

A basic ionic liquid, 1‐butyl‐3‐methyl imidazolium hydroxide ([Bmim]OH), was synthesized and used as the additives in an iron‐mediated atom transfer radical polymerization with activators generated by electron transfer (AGET ATRP) of methyl methacrylate in bulk and solution, using FeCl₃ · 6H₂O as the catalyst, ethyl 2‐bromoisobutyrate as the initiator, vitamin C (Vc) as the reducing agent, and tetrabutylammonium bromide or tetra‐n‐butylphosphonium bromide as the ligand. Catalytic amount of [Bmim]OH could enhance the polymerization rate and produce poly(methyl methacrylate) with controllable molecular weights and narrow molecular weight distributions (M_w/M_n = 1.3–1.4). The nature of controlled/“living” free radical polymerization in the presence of basic ionic liquid was further confirmed by chain‐extension experiments. © 2012 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Crystal chemistry of MX · MgX2 · 6H2O type compounds

The following MX · MgX₂ · 6H₂O compounds (double salt hexahydrates) were synthesized by variation of the M⁺ and X^? ions: CsCl · MgCl₂ · 6 H₂O, Li(H₂O)Cl · MgCl₂ · 6H₂O, NH₄Br · MgBr₂ · 6 H₂O, RbBr · MgBr₂ · 6 H₂O, CsBr. MgBr₂ · 6 H₂O, KI · MgI₂ · 6 H₂O, NH₄I. Mgl₂ · 6 H₂O and RbI · MgI₂ · 6H₂O. By X-ray analysis of powder samples the lattice parameters and the space group were determined. On the basis of the results thus obtained, an identification with structural types was carried out. In accordance with the findings, the structure is made up of (M⁺)X₆^?octahedra which are linked into perovskite type units by sharing vertices. Their interstices are occupied by the Mg(H₂O)₆²⁺ octahedra. A “tolerance factor” t which has been calculated on the basis of the proportion of radii and which attains values between 1.045 and 1.061 is a criterion for the upper limit of the area of existence of this structure. Carnallite has a higher to value and, therefore, a different structure.     

Nature of MoH···I bonds in Cp2Mo(L)H···I‐C≡C‐R Complexes (L=H,CN, PPh2, C(CH3)3; R=NO2, Cl,Br, H,OH, CH3, NH2)

The nature of the MoH···I bond in Cp₂Mo(L)H···I‐C≡C‐R (L= H, CN, PPh₂, C(CH₃)₃; R=NO₂, Cl, Br, H, OH, CH₃, NH₂) was investigated using electrostatic potential analysis, topological analysis of the electron density, energy decomposition analysis and natural bond orbital analysis. The calculated results show that MoH···I interactions in the title complexes belong to halogen‐hydride bond, which is similar to halogen bonds, not hydrogen bonds. Different to the classical halogen bonds, the directionality of MoH···I bond is low; Although electrostatic interaction is dorminant, the orbital interactions also play important roles in this kind of halogen bond, and steric interactions are weak; the strength of H···I bond can tuned by the most positive electrostatic potential of the I atom. As the electron‐withdrawing ability of the R substituent in the alkyne increases, the electrostatic potential maximum of the I atom increases, which enhances the strength of the H···I halogen bond, as well as the electron transfer.     

[DBU‐H]+ and H2o as effective catalyst form for 2,3‐dihydropyrido[2,3‐d]pyrimidin‐4(1H)‐ones: A DFT Study

DFT investigations are carried out to explore the effective catalyst forms of DBU and H₂O and the mechanism for the formation of 2,3‐dihydropyrido[2,3‐d]‐pyrimidin‐4(1H)‐ones. Three main pathways are disclosed under unassisted, water‐catalyzed, DBU and water cocatalyzed conditions, which involves concerted nucleophilic addition and H‐transfer, concerted intramolecular cyclization and H‐transfer, and Dimroth rearrangement to form the product. The results indicated that the DBU and water cocatalyzed pathway is the most favored one as compared to the rest two pathways. The water donates one H to DBU and accepts H from 2‐amino‐nicotinonitrile ( 1 ), forming [DBU‐H]⁺‐H₂O as effective catalyst form in the proton migration transition state rather than [DBU‐H]⁺‐OH^?. The hydrogen bond between [DBU‐H]⁺···H₂O··· 1 ^? decreases the activation barrier of the rate‐determining step. Our calculated results open a new insight for the green catalyst model of DBU‐H₂O. © 2015 Wiley Periodicals, Inc.     

Correlation between the reactivity and spectroscopic properties of N‐substituted secondary thioamides. New intramolecular N···H+···N binding approach and proton complexes based on thioamide ligation

On the basis of a comparison of chemical shifts and wavenumbers of several secondary thioamides and amides having monocationic substituents attached to thiocarbamoyl or carbamoyl groups by a polymethylene chain, new intramolecular unconventional N···H⁺···N hydrogen bonding effects were discovered. It is argued that the CH₂—N rotation is hindered and two ⁺H···NHCH₃ non‐equivalent protons occur in a proton spectrum of hydrochloride 1a (at 10.68 and 2.77 ppm, respectively) instead of two ⁺NH₂CH₃ protons. Presumably, the above steric factors inhibit the acidic hydrolysis of 1a (stabilized by strong intramolecular N···H⁺···N hydrogen bonds) to an amide and prevent intramolecular cyclization of 2a (stabilized by strong intramolecular neutral–neutral N···HN hydrogen bonds) to a cyclic amidine. Postulation of additional dihydrogen bond formation is helpful in understanding the spectroscopic differences of 4 and 5 . The above new bonding is also compared with intramolecular N···H—N⁺ hydrogen bonds in primary amine salts 7 and 8 . In contrast to 3 , a cooperative hydrogen bonded system is observed in 9 and 10 . The weak hydrogen bonds in 7 – 10 facilitate the hydrolysis and cyclization reactions of secondary thioamides. The spectroscopic data for secondary (thio)amides are especially useful for characterizing the electronic situation at the (thio)carbamoyl nitrogen atoms and they are perfectly correlated with the reactivity. Examples of chelation of protons by thioamides ( 11 and 12 ), which contain strongly electron‐donating pyrimidine groups, are presented to show the contribution of dihydrogen bonding in the protonation reaction similar to 1 and 4 . Copyright © 2003 John Wiley & Sons, Ltd.     

An insight into CH···N hydrogen bond and stability of the complexes formed by trihalomethanes with ammonia and its monohalogenated derivatives

A theoretical study of the C?H···N hydrogen bond in the interactions of trihalomethanes CHX₃ (X = F, Cl, Br) with ammonia and its halogen derivatives NH₂Y (Y = F, Cl, Br) has been carried out thoroughly. The complexes are quite stable, and their stability increases in going from CHF₃ to CHCl₃ then to CHBr₃ when Y keeps unchanged. With the same CHX₃ proton donor, enhancement of the gas phase basicity of NH₂Y strengthens stability of the CHX₃···NH₂Y complex. The C?H···N hydrogen bond strength is directly proportional to the increase of proton affinity (PA) at N site of NH₂Y and the decrease of deprotonation enthalpy (DPE) of C?H bond in CHX₃. The CHF₃ primarily appears to favor blue shift while the red‐shift is referred to the CHBr₃. The blue‐ or red‐shift of CHCl₃ strongly depends on PA at N site of NH₂Y. We suggest the ratio of DPE/PA as a factor to predict which type of hydrogen bond is observed upon complexation. The SAPT2+ results show that all C?H···N interactions in the complexes are electrostatically driven regardless of the type of hydrogen bond, between 48% and 61% of the total attractive energy, and partly contributed by both induction and dispersion energies.     

An Unexpected Diboroxane: Crystal Structure of Me2HN · (CF3)2BOB(CF3)2 · NHMe2

(CF₃)₂BNMe₂ ( 1 ) reacts at room temperature with water in a 2:1 ratio to form bis(dimethylamine)‐tetrakis(trifluoromethyl)diboroxane Me₂HN·(CF₃)₂BOB(CF₃)₂·NHMe₂ ( 2 ), whereas a 1:1 ratio at —78 °C had yielded HO(CF₃)₂B·NHMe₂ ( 3 ). The constitution of 2 has been deduced from multinuclear NMR, IR and mass spectra, and the structure has been determined by single‐crystal X‐ray diffraction. Averaging 1.396(6) Å, the B—O bond length is short, and the B—O—B bond angle, 150.4(3)°, is very wide.     

A detailed theoretical study on the excited‐state hydrogen‐bonding dynamics and the proton transfer mechanism for a novel white‐light fluorophore

In this work, density functional theory (DFT) and time‐dependent DFT (TDDFT) methods were used to investigate the excited‐state dynamics of the excited‐state hydrogen‐bonding variations and proton transfer mechanism for a novel white‐light fluorophore 2‐(4‐[dimethylamino]phenyl)‐7‐hyroxy‐6‐(3‐phenylpropanoyl)‐4H‐chromen‐4‐one ( 1 ). The methods we adopted could successfully reproduce the experimental electronic spectra, which shows the appropriateness of the theoretical level in this work. Using molecular electrostatic potential (MEP) as well as the reduced density gradient (RDG) versus the product of the sign of the second largest eigenvalue of the electron density Hessian matrix and electron density (sign[λ₂]ρ), we demonstrate that an intramolecular hydrogen bond O1–H2···O3 should be formed spontaneously in the S₀ state. By analyzing the chemical structures, infrared vibrational spectra, and hydrogen‐bonding energies, we confirm that O1–H2·O3 should be strengthened in the S₁ state, which reveals the possibility of an excited‐state intramolecular proton transfer (ESIPT) process. On investigating the excitation process, we find the S₀ → S₁ transition corresponding to the charge transfer, which provides the driving force for ESIPT. By constructing the potential energy curves, we show that the ESIPT reaction results in a dynamic equilibrium in the S₁ state between the forward and backward processes, which facilitates the emission of white light.     

Unconventional H‐bonds: SH···N interaction

Quantum calculations at the MP2/aug‐cc‐pVDZ level are used to analyze the SH···N H‐bond in complexes pairing H₂S and SH radical with NH₃, N(CH₃)₃, NH₂NH₂, and NH₂N(CH₃)₂. Complexes form nearly linear H‐bonds in which the S? H covalent bond elongates and shifts its stretching frequency to the red. Binding energies vary from 14 kJ/mol for acceptor NH₃ to a maximum of 22 kJ/mol for N(CH₃)₃ and N(CH₃)₂NH₂. Analysis of geometric, vibrational, and electronic data indicate that the SH···N interaction involving SH is slightly stronger than that in which the closed‐shell H₂S serves as donor. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Assessing the attractive/repulsive force balance in axial cyclohexane C–Hax···Yax contacts: A combined computational analysis in monosubstituted cyclohexanes

The interactions of axial substituents in monosubstituted cyclohexane rings are studied in this work using an array of different computational techniques. Additionally, the anomalous axial preference for some bulky substituents is related to stabilizing dispersion interactions. We find that the C–H_ax···Y_ax contacts for various substituents with distances ranging from 2 to ～5 Å may include attractive dispersion forces that can affect the conformational equilibrium; these forces co‐exist with Pauli repulsive forces effected by Y_ax group due to van der Waals sphere penetration. At distances between 2 and 3 Å stabilizing electron transfer interactions were calculated and the combination of natural bond orbital and QTAIM analysis showed that, in certain cases, Y_ax = ^tBu, C_ax–O or C_ax = O or S_ax = O or C_ax = S this interaction can be characterized as an improper H‐bond. DFT‐D3 and non‐covalent interactions calculations (NCIs) in cyclohexane derivatives with Y_ax = SiOR₃ including H_Yax···H_cy surfaces at distances ranging between 4 and 6 Å suggest that dispersion has a clear effect on the experimentally observed stabilization of the axial conformer. NCIs computed from the reduced density gradient help to visually identify and analyze these interactions. © 2016 Wiley Periodicals, Inc.     

A 2D Supramolecular Network Based on Aromatic π···π Stacking Interactions

Using ferrocenecarboxylic acid (FcCOOH) as organometallic ligand in the synthesis of heterometallic complexes led to the isolation of the compound [(FcCOO)Cu(bpy)₂](BF₄) · bpy · CH₃OH. It was characterized by IR spectroscopy, EA, powder XRD, UV, and TGA measurements. Single‐crystal X‐ray structural analysis revealed that a unique 2D supramolecular network purely formed by aromatic π ··· π stacking interactions was observed, namely, {[(FcCOO)Cu(bpy)₂](BF₄) · bpy · CH₃OH}_∞ ( 1 ). The solid UV/Vis diffuse reflectance spectrum revealed the optical energy gap of 1 to be 3.54 eV, which is dramatically blue shifted compared with the value of ferrocene. Experimental results of thermal analysis and electrochemical analysis show that 1 has good thermal and better electrochemical stability.