Effect of hydrogen bond formation on the NMR properties of microhydrated ortho-aminobenzoic acid

The in?uence of the hydrogen bond formation on the nuclear magnetic resonance parameters has been investigated in the case of microhydrated ortho-aminobenzoic acid (o-Abz) in the gas-phase. DFT-B3LYP/aug-cc-pVDZ predicted ¹H and ¹³C isotropic chemical shifts with respect to TMS of the isolated o-Abz are in reasonable agreement with available experimental data. The isotropic and anisotropic chemical shifts for all atoms of o-Abz within the o-Abz?···?(H₂O)_1-3 complexes have been calculated at the Hartree–Fock, and density functional (B3LYP) theoretical levels using the 6-31++G(2d,2p) and aug-cc-pVDZ basis sets and considering the counterpoise corrections for the basis set superposition errors. The chemical shift values of the carboxyl group atoms of microhydrated o-Abz relative to isolated o-abz do not show significant basis set dependence. Both the hydrogen and carbon atoms constituting the carboxyl group of o-Abz suffer downfield shift due to formation of hydrogen bond with water. The length of hydrogen bond formed between o-Abz and water is found to vary with the number of water molecules present around o-Abz. A direct correlation between the hydrogen bond length and isotropic chemical shift of the bridging hydrogen is observed for both C?=?O?···?H-O and O-H?···?O interactions.     

Initiation of petroleum formation and antioxidant function – a DFT study of sulfur?sulfur bond dissociation enthalpies

Experimental studies showed that sulfur radicals play the vital role in petroleum formation. 1 Sulfur‐ centered radicals also exhibit activities in antioxidant functions. Here we conduct a theoretical investigation of their precursor‐disulfides. By investigation into substituent effect on sulfur? sulfur bond dissociation enthalpies (S? S BDEs), we would like to find the most effective provider for sulfur radicals. In the present work, 50 alpha‐substituted disulfides and 16 para‐substituted aryl disulfides are studied systematically, with the general formula XS‐SX or HS‐SX. The substituent effect on S? S BDEs is found to be very eminent, ranging from 33.2 to 75.0 kcal/mol for alpha‐substituted disulfide, and from 43.7 to 59.7 kcal/mol for para‐substituted phenyl disulfides. We also evaluate the performance of 44 density functional methods to get an accurate prediction. A further study indicates that substituents play a major role in radical energies, instead of molecule energies, which is substantiated by the good linearity between XS‐SX bond dissociation enthalpy (BDE) and HS‐SX BDE. Copyright © 2007 John Wiley & Sons, Ltd.     

Density functional theory calculations on S―S bond dissociation energies of disulfides

The S―S bond cleavage plays an important role in affecting the reactivity or biological activities of disulfide‐based compounds. With the aid of density functional theory (DFT) calculations, the present study focuses on predicting the S―S bond dissociation energies (BDEs) of disulfides. The range of BDEs of different types of disulfides was constructed for the first time. It was found that the electronic effect (and especially the conjugation effect) of substituents is predominant in determining the S―S bond strength of disulfides. By contrast, the steric effect is insignificant for most molecules due to the long S―S bond distances. We hope that the present study will benefit the future development of more powerful strategies in activating the S―S bond of disulfides. Copyright © 2015 John Wiley & Sons, Ltd.     

Does the five‐member hydrogen bond ring in quinoline carboxamides exist?

The presence of intramolecular NHN hydrogen bond in 4‐R‐quinoline‐2‐(N‐R′‐carboxamides) was investigated by AIM methodology. Values of electron density, elipticity, and total energy density at the bond critical point of H···N in amides were compared with respective values of H···O in their N‐oxides. Copyright © 2008 John Wiley & Sons, Ltd.     

Substituent effect on local aromaticity in mono and di‐substituted heterocyclic analogs of naphthalene

A quantitative study on local aromaticity has been performed on a series of mono‐ and di‐substituted biheterocycles (quinoline, isoquinoline, quinoxaline, quinazoline). Three electronically based indices (PDI, ATI, and FLU) have been employed to investigate the substituent effect on the π‐electron delocalization in both heterocycle and benzenoid rings. Three typical substituents (Cl, OCH₃, and CN) with different inductive and resonance power have been selected. Generally, substituent causes a reduction in aromaticity irrespective of whether it is electron attracting or electron donating. It is shown that the maximum aromaticity exhibits a similar trend of Cl > CN > OCH₃ for all the studied rings. Moreover, it is found that the substituent situation with respect to the heteroatom has a significant influence on the aromaticity. It results from our study that in di‐substituted derivatives, irrespective of whether the two substituents form a meta or para isomer, they preferably choose the position which leads to the maximum aromaticity character. Copyright © 2009 John Wiley & Sons, Ltd.     

Theoretical and experimental studies on stability of the C‐ON bond in new ketone functionalized N‐alkoxyamines

Three new ketone functionalized N‐alkoxyamines derived from 2,2,6,6‐tetramethylpiperidin‐1‐oxyl (TEMPO) were prepared: N‐(1‐phenylpropyloxy)‐2,2,6,6‐tetramethylpiperidin‐4‐one, 1‐phenyl‐1‐(2,2,6,6‐tetramethylpiperidinoxy)propanone, 1‐phenyl‐1‐(4‐oxo‐2,2,6,6‐tetramethylpiperidinoxy)propanone. The rate constants of C‐ON bonds homolysis in the synthesized alkoxyamines were determined over a range of temperatures via nitroxide‐exchange experiments using HPLC to monitor the concentration. The Arrhenius parameters of homolysis for the investigated alkoxyamines were determined (lnA, E_a). Homolytic bond dissociation energies (BDE) of the C‐ON bond in the synthesized compounds were determined from quantum‐mechanical calculations at the B3‐LYP/6‐31G(d) and BMK/6‐311+G(3df,2p) levels. Ketone functionalization of the alkyl fragment of alkoxyamine in β position dramatically increases the rate constant of homolysis (by a factor of ca. 500 at the temperature of 363 K) suggesting that the new ketone functionalized N‐alkoxyamines should be effective as C‐radical precursor and unimolecular initiators in NMRP at lower temperatures than the alkoxyamines applied earlier. The analyses of natural bond, frontal orbitals and spin distribution indicated that the decrease in the strength of C‐ON bonds in ketone fuctionalized alkoxyamines in the alkyl fragment predominantly originates from a substantially smaller HOMO–LUMO gap and more delocalized spin density in leaving alkyl radicals as compared with unfunctionalized alkoxyamines. Copyright © 2010 John Wiley & Sons, Ltd.     

Spectroscopic manifestations of the intramolecular hydrogen bond in ordinary and sterically hindered porphyrins

Spectroscopic manifestations of the intramolecular hydrogen bond (IHB) in ordinary and sterically hindered porphyrins were investigated by the methods of IR spectroscopy and molecular modeling. It is shown that the IHB plays a part in the formation of the νNH and γNH vibrations of porphyrins. By changing the type and value of the distortion of the macroring at the expense of steric effects of interaction of volumetric substituents, the parameters and spectroscopic manifestations of the IHB can be varied in a significantly larger range as compared with ordinary tetrapyrroles having nearly quadratic and planar macrorings. Reported at the VIIIth International Conference on Spectroscopy of Porphyrins and Their Analogs, Minsk, September 22–26, 1998. Translated from Zhurnal Prikladnoi Spektroskopii, Vol. 66, No. 4, pp. 522–527, July–August, 1999.     

Dihydrogen bond and X–H…σ interaction as sub‐classes of hydrogen bond

Dihydrogen bond (DHB) and X–H…σ interaction are discussed and compared here. Both interactions possess numerous characteristics of the hydrogen bond (HB). The Natural Bond Orbitals method results show that σ → σ* is the most important interaction connected with the electron charge transfer from the Lewis base to the Lewis acid for the DHB as well as for the X–H…σ HB. However, there are distinct differences between these interactions, and this is evident from the analysis based on the Quantum Theory of Atoms in Molecules as well as from the decomposition of the energy of interaction. The X–H…π interaction is also discussed here since it possesses few characteristics typical for the X–H…σ interaction and not for the DHB. Copyright © 2013 John Wiley & Sons, Ltd.     

Raman signatures of strong and weak hydrogen bonds in binary mixtures of phenol with acetonitrile,benzene and orthodichlorobenzene

The present study aims at investigating the effect of hydrogen bonds of phenol in binary mixtures of phenol with three solvents viz. acetonitrile, orthodichlorobenzene and benzene respectively in order of decreasing hydrogen bond strength. Raman spectroscopy in correlation with density functional theory (DFT) calculations has led to a profound understanding of changes in structure, energy, dipole moment and other physical and chemical properties of phenol pertaining to hydrogen bond formation in solution. The spectral variation in wavenumber and linewidth of ring deformation, ring stretching, C≡N stretching and C―H stretching modes have been analyzed in detail. The breaking of self association of phenol in solution and formation of strong or weak hydrogen bonds depending on the nature of the solvent has been discussed by comparing the Raman and DFT results for three different solvents. Copyright © 2016 John Wiley & Sons, Ltd.     

Symmetry of generalized mean-square vibration amplitudes and their effect on mean and equilibrium bond lengths in benzene, pyridine, and N-oxypyridine

Symmetry properties of generalized mean-square vibration amplitudes for plane six-membered rings belonging to the C_2v and D_6h symmetry groups are investigated. Corrections to average and equilibrium interatomic distances in benzene, pyridine, and N-oxypyridine are calculated. The character of the corrections in the series of these molecules and their deuterosubstituted analogs is investigated. Saratov State University, 83, Astrakhanskaya St., Saratov, 410601, Russia. Translated from Zhurnal Prikladnoi Spektroslopii, Vol. 65, No. 2, pp. 192–195, March–April, 1998.     

Excited‐state hydrogen bond strengthening of coumarin 153 in ethanol solvent: a TDDFT study

So far, coumarin dyes have been extensively studied with various means to understand their photophysical behaviors and photochemical properties. Here, our performing time‐dependent density functional theory calculation is aimed at exploring the excited‐state hydrogen bonding dynamics of coumarin 153 (C153) in protic ethanol (EtOH) solvent. The calculated results suggest that the excited‐state hydrogen bond C?O?H?O between C?O group and O?H group in the C153‐EtOH complex is strengthened, and the S₀ → S₁ transition of the complex corresponds to the highest occupied molecular orbital (HOMO) hopping to the lowest unoccupied molecular orbital (LUMO). The excited‐state hydrogen bond strengthening has been further confirmed by its larger binding energy in the S₁ state than in the S₀ state. In addition, because of the formation of the hydrogen bond C?O?H?O, a red shift of about 7 nm occurs in the electronic spectra of the C153‐EtOH complex, which is in good accordance with the experiment result. Copyright © 2016 John Wiley & Sons, Ltd.     

High pressure investigations on hydrous magnesium silicate-phase A using first principles calculations: H---H repulsion and changes in hydrogen bond geometry with compression

We have carried out first principles structural relaxation calculations on the hydrous magnesium silicate phase A (Mg₇Si₂O₈(OH)₆) under high pressures. Our results show that phase A does not undergo any phase transition up to ～45 GPa. We find that non-bonded H---H distance reaches a limiting value of 1.85 Å at about 45 GPa. The hydrogen bond bending mechanism for countering the H---H repulsive strain that was proposed by Hofmeister et al. for phase B is not the only one operating in phase A. It also has contributions based on the reduction of one of the O–H bond distances and opening up of the H---O---H angle with compression. The contraction of the O–H distance with pressure, perhaps the first one by density function theory calculations, will have implications for the spectroscopic measurements.     

DFT study of the hydrogen bond strength and IR spectra of formic,oxalic, glyoxylic and pyruvic acids in vacuum,acetone and water solution

The molecular geometries of the possible conformations of formic, oxalic, glyoxylic and pyruvic acids have been fully optimized at DFT B3LYP/6‐311++G(d,p) levels of calculation in vacuum as well as in water and acetone solution. Solutions were treated according to the SCRF PCM approach but some formic acid–water and formic acid–acetone clusters as well as adducts of oxalic acid with two or four water molecules were also taken into account for testing the importance of specific solute–solvent effects. All the most stable isomers of the title compounds are characterized by weak intramolecular hydrogen bonds, whose strengths (E_HB) cannot be correctly estimated as stability difference between the open and chelate forms since the energy of the former isomer is, in turn, stabilized by a weak hydrogen bridge due to the formic acid moiety. Following the Rotation Barrier Method (RBM), proposed some years ago, E_HB in the examined molecules (gas phase) falls in the range of 18–22 kJ/mol for oxalic acid (9.6 kJ/mol for the c‐C‐t isomer), 16.8 kJ/mol for glyoxylic acid and 19.8 kJ/mol for pyruvic acid. Most of them disappear at all, or nearly at all, both in acetone and aqueous solution, in consequence of the solvent effect. The frequencies of the OH and C?O stretching modes, calculated according to the anharmonic oscillator model, are in very good agreement with the experimental literature data, where available. Copyright © 2009 John Wiley & Sons, Ltd.     

The influence of CH … π interaction on coupling constants across N … H–F hydrogen bond in a substituted T-shaped configuration: a theoretical study

For studying the influence of CH?…?π interaction on coupling constants across N?…?H–F hydrogen bond in a substituted T-shaped configuration, X-benzene⊥(FH?…?pyrazine?…?HF) complexes are chosen as a working model. NMR calculations are performed at B3LYP/6-311++G(d,p) and PBE0/6-311++G(d,p) levels. Here, correlations between energetic, geometrical and topological parameters and coupling constants are investigated. The results indicate that direct correlations exist between strength of N?…?H hydrogen bond, electron-donating power of substituents and |^2hJ_N?F|. Also, |^2hJ_N?F| increases as cooperative and synergistic energies become more negative. These behaviours are reversed for ^1hJ_N?H. Due to contradictory behaviours of FC and PSO terms, an irregular trend is observed for ¹J_H?F.     

Selectivity in metal ions mediated C–N bond formation reactions of 8‐aminoquinoline derivatives

Cyclisation reactions via C–N bond formation of 2‐bromo‐N‐(quinolin‐8‐yl)propanamide (I) and 2‐bromo‐N‐(quinolin‐8‐yl)acetamide (II) are facilitated by metal salts such as copper (+2), nickel (+2) perchlorate or nitrate and palladium (+2) acetate. Nickel (+2) perchlorate mediated reaction of I and II resulted in C–N bond formation to give corresponding perchlorate salts of three fused six‐membered heterocyclic rings. The copper (+2) mediated reactions are found to be solvent dependent for I, but independent for II. Copper mediated reaction of II gave cyclised product analogous to the one obtained from reaction of II with nickel (+2) perchlorate in methanol or ethanol. But the reaction of I with copper (+2) perchlorate in methanol gave C–N bonded methoxylated cyclised product. This reaction took place in two steps, cyclisation followed by methoxylation. The source of methoxy group is confirmed to be from methanol by deuterium labelling experiments. Whereas similar copper mediated reaction of I in ethanol led to nucleophilic substitution of bromide ion by ethoxide. The structures of the salts of fused heterocyclic compounds were determined and their fluorescence emissions were studied. The large difference in fluorescence emission of compound V formed from copper mediated reaction in ethanol from the compound VI formed from nickel mediated reaction in methanol or ethanol, this feature can be used to distinguish nickel (+2) and copper (+2) ions. The reaction of II with palladium (+2) acetate resulted in the formation of C–N bond to yield the corresponding heterocycle as bromide salt; without anion exchange. Copyright © 2011 John Wiley & Sons, Ltd.     

The effect of benzo‐annelation on intermolecular hydrogen bond and proton transfer of 2‐methyl‐3‐hydroxy‐4(1H)‐quinolone in methanol: A TD‐DFT study

Excited‐state intermolecular or intramolecular proton transfer (ESIPT) reaction has important potential applications in biological probes. In this paper, the effect of benzo‐annelation on intermolecular hydrogen bond and proton transfer reaction of the 2‐methyl‐3‐hydroxy‐4(1H)‐quinolone (MQ) dye in methanol solvent is investigated by the density functional theory and time‐dependent density functional theory approaches. Both the primary structure parameters and infrared vibrational spectra analysis of MQ and its benzo‐analogue 2‐methyl‐3‐hydroxy‐4(1H)‐benzo‐quinolone (MBQ) show that the intermolecular hydrogen bond O₁―H₂?O₃ significantly strengthens in the excited state, whereas another intermolecular hydrogen bond O₃―H₄?O₅ weakens slightly. Simulated electron absorption and fluorescence spectra are agreement with the experimental data. The noncovalent interaction analysis displays that the intermolecular hydrogen bonds of MQ are obviously stronger than that of MBQ. Additionally, the energy profile analysis via the proton transfer reaction pathway illustrates that the ESIPT reaction of MBQ is relatively harder than that of MQ. Therefore, the effect of benzo‐annelation of the MQ dye weakens the intermolecular hydrogen bond and relatively inhibits the proton transfer reaction.     

Identification of hydrogen bond modes in polarized Raman spectra of single crystals of α‐oxalic acid dihydrate

Polarized Raman spectra of single crystals of the α‐polymorphs of protonated and deuterated oxalic acid dihydrate were recorded. The interpretation of the spectra is assisted by periodic DFT calculations using the CRYSTAL06 program and by comparison with the infrared spectra of the polycrystalline material. The agreement between the calculated and observed band wavenumbers is fair in the case of low‐anharmonicity modes, but marked differences appear for the stretching modes that are strongly anharmonic. A very broad feature, extending between ∼2000 and 1200 cm⁻¹, is attributed to OH stretching. Notable is the topping of this feature by distinct bands that can be attributed to CO stretching, H₂O scissoring and COH bending coupled to C O stretching. The assignments are supported by isotope effects. However, deuteration does not notably affect the wavenumber limits of the broad OH stretching band, which suggests that the potential governing the proton dynamics is of the asymmetric double‐minimum type with a very low barrier. The calculated normal coordinates show a strong participation of the bending modes of water molecules in almost all internal acid motions, as well as in the external phonons. Copyright © 2009 John Wiley & Sons, Ltd.     

The 15N and 13C solid state NMR study of intramolecular hydrogen bond in some Schiff's bases

A series of 11 Schiff's bases derived from substituted salicylaldehyde and aliphatic amines has been studied in the solid state by ¹⁵N and ¹³C cross-polarization magic angle spinning (CPMAS) nuclear magnetic resonance (NMR). ¹⁵N CPMAS is especially useful for investigation of the tautomerism in the compounds considered, owing to the large difference in the nitrogen chemical shifts of OH and NH tautomers. In the solid state, three of the compounds examined were shown by ¹⁵N NMR to exist as OH tautomeric forms, and the remaining eight as the corresponding NH forms. This was confirmed by ¹³C CPMAS. The results reported were compared with those obtained in CDCl₃ solutions.