Van der Waals radii of metals from spectroscopic data

The lack of information about the van der Waals radii of metals can be compensated for by using the results of spectroscopic investigations of van der Waals molecules. It has been shown that the interatomic distances in these molecules obey an additive scheme if one allows for the polarization effects. The van der Waals radii of the alkali metals, Ag, Mg, Zn, Cd, Hg, B, Al, In, and Si, have been determined from the interatomic distances in their heteroatomic molecules with atoms of noble gases. Use of the obtained radii for crystal chemistry is discussed.Translated fromIzyestiya Akademil Nauk. Seriya Khimicheskaya, No. 8, pp. 1374–1378, August, 1994.     

New dimension indices for the characterization of the solvent‐accessible surface

A method for the computation of a dimension index D is implemented in program TOPO and applied to calculate the solvent‐accessible surfaces of molecules. Our algorithm distinguishes external from internal atoms, and uses such a feature to give two fractal‐like dimension indices, D and D′. The D′−D difference is a sensitive method to elucidate the occurrence of atoms that are hidden to solvents. For molecules with buried atoms this difference is great (e.g., faujasite). The procedure is compared with the GEPOL code, which provides high‐quality results. TOPO systematic error can be easily corrected by simple addition of a small constant value (0.011). Correlation models between indices D and D′, globularity, rugosity, dipole moment and other properties make clear the existence of a homogeneous molecular structure in each series. Additional applications are the extrapolation of D to infinite polymers, the variation of the D with generations of dendrimers and a revision of D for lysozyme. © 2001 John Wiley & Sons, Inc. J Comput Chem 22: 477–487, 2001     

Aryloxide-based multidentate ligands for early transition metals and f-element metals

This article presents an overview of the chemistry of early transition metal and f-element complexes stabilized by aryloxide-based multidentate ligands. Preparations and reactivity studies of these compounds are discussed. The presence of the bridging units in this ligand system imposes a strong geometry constraint to the aryloxide groups, which leads the way to novel patterns of structure and reactivity.     

Synthesis of guanidine‐containing copolymers and their applications in the sorption of transition metals

2,2‐Diallyl‐1,1,3,3‐tetraethylguanidinium chloride copolymers with N‐substituted maleimides have been prepared by free radical copolymerization. Specific surface area and porosity of the copolymers under investigation have been determined by using the low‐temperature adsorption method. Sorption capacity of the copolymers toward Re(VII), Mo(VI), Ni(II) and Cu(II) ions has been investigated. The influence of treatment time, temperature and pH on sorption of metal ions was studied. Copyright © 2016 John Wiley & Sons, Ltd.     

Beta‐decomposition for the volume and area of the union of three‐dimensional balls and their offsets

Given a set of spherical balls, called atoms, in three‐dimensional space, its mass properties such as the volume and the boundary area of the union of the atoms are important for many disciplines, particularly for computational chemistry/biology and structural molecular biology. Despite many previous studies, this seemingly easy problem of computing mass properties has not been well‐solved. If the mass properties of the union of the offset of the atoms are to be computed as well, the problem gets even harder. In this article, we propose algorithms that compute the mass properties of both the union of atoms and their offsets both correctly and efficiently. The proposed algorithms employ an approach, called the Beta‐decomposition, based on the recent theory of the beta‐complex. Given the beta‐complex of an atom set, these algorithms decompose the target mass property into a set of primitives using the simplexes of the beta‐complex. Then, the molecular mass property is computed by appropriately summing up the mass property corresponding to each simplex. The time complexity of the proposed algorithm is O(m) in the worst case where m is the number of simplexes in the beta‐complex that can be efficiently computed from the Voronoi diagram of the atoms. It is known in ?³ that m = O(n) on average for biomolecules and m = O(n²) in the worst case for general spheres where n is the number of atoms. The theory is first introduced in ?² and extended to ?³. The proposed algorithms were implemented into the software BetaMass and thoroughly tested using molecular structures available in the Protein Data Bank. BetaMass is freely available at the Voronoi Diagram Research Center web site. © 2012 Wiley Periodicals, Inc.     

Liquid‐crystalline azobenzene‐containing ferrocene‐based polymers: study on synthesis and properties of main‐chain ferrocene‐based polyesters with azobenzene in the side chain

Ferrocene‐based polymers are characterized by their electrochemical activity, good redox properties, thermal, photochemical stability, and liquid crystallinity, and thus they have various applications in different fields. A comprehensive investigation on the synthesis and properties of three novel main‐chain ferrocene‐based polyesters with azobenzene in the side chain (MFPAS) was carried out. The main‐chain ferrocene‐based polyester, poly(N‐phenyldiethanolamine 1,1′‐ferrocene dicarboxylate (PPFD), was synthesized via the solution polycondensation reaction of 1,1′‐ferrocenedicarbonyl chloride with phenyldiethanolamine (PDE). The novel MFPAS were synthesized via the post‐polymerization azo‐coupling reaction of PPFD with three different 4‐substituted anilines including 4‐nitroaniline, 4‐aminobenzoic acid, and 4‐aminobenzonitrile to produce 4‐nitrophenylazo‐functionalized‐PPFD (PPFD‐NT), 4‐carboxyphenylazo‐functionalized‐PPFD (PPFD‐CA), and 4‐cyanophenylazo‐functionalized‐PPFD (PPFD‐CN), respectively. All the synthesized polymers were characterized by ¹H NMR spectroscopy, Fourier transform infrared spectroscopy, and UV–visible spectroscopy. In addition, powder X‐ray diffraction patterns were measured for the synthesized polymers. The photoisomerization of the MFPAS was studied. The thermal properties of the MFPAS were studied using thermogravimetric analysis and differential scanning calorimetry. PPFD‐CA and PPFD‐CN were found to be more thermally stable than PPFD‐NT. Finally, the liquid‐crystalline properties of PPFD and the MFPAS were examined using polarized optical microscope. It was found that all the polymers possessed nematic phases and exhibited textures with schlieren disclinations. Copyright © 2012 John Wiley & Sons, Ltd.     

Predicting adsorption enthalpies on silicalite and HZSM‐5: A benchmark study on DFT strategies addressing dispersion interactions

We evaluated the accuracy of periodic density functional calculations for adsorption enthalpies of water, alkanes, and alcohols in silicalite and HZSM‐5 zeolites using a gradient‐corrected density functional with empirical dispersion corrections (PBE‐D) as well as a nonlocal correlation functional (vdW‐DF2). Results of both approaches agree in acceptable fashion with experimental adsorption energies of alcohols in silicalite, but the adsorption energies for n‐alkanes in both zeolite models are overestimated, by 21?46 kJ mol^?1. For PBE‐D calculations, the adsorption of alkanes is exclusively determined by the empirical dispersion term, while the generalized gradient approximation‐DFT part is purely repulsive, preventing the molecule to come too close to the zeolite walls. The vdW‐DF2 results are comparable to those of PBE‐D calculations, but the latter values are slightly closer to the experiment in most cases. Thus, both computational approaches are unable to reproduce available experimental adsorption energies of alkanes in silicalite and HZSM‐5 zeolite with chemical accuracy. © 2014 Wiley Periodicals, Inc.     

Transition Metal‐Participated Synthesis and Utilization of N‐containing Heterocycles: Exploring for Nitrogen Sources

This account aims to describe our recent efforts on the synthesis and utilization of N‐containing heterocycles, where transition metals participate in the synthesis. A variety of nitrogen sources, including amines, amides, hydrazones, pyrimidines, isocyanides, and copper nitrate, have been disclosed for the synthesis of diverse bioactive and pharmacologically interesting N‐containing heterocycles under the participation of transition metals. The well‐known nitrogen sources, such as amines and amides, were used for the construction of indoles, isatins, and quinolones. Dihydrophthalazines, isoquinolines, indazoles, and pyrazoles were obtained from hydrazones, while various pyrimidine‐containing heterocycles were afforded through regioselective C?H functionalizations using pyrimidine as the directing group. Recent research has focused on the chemistry of isocyanides to achieve several kinds of heterocyclic compounds with high efficiency under the catalysis of transition metals (Pd, Rh, Mn, Cu), through oxidative cyanation reactions, sequential isocyanide insertions into C?H, N?H, or O?H bonds, and tandem radical annulation. More recently, an efficient route to isoxazolines has been reported using copper nitrate as a novel nitrogen source.     

Cooling,Spectroscopy and Non‐Sticking of trans‐Stilbene and Nile Red

We create and study trans‐Stilbene and Nile Red in a cryogenic (7 K) cell with a low density helium buffer gas. No molecule–helium cluster formation is observed, indicating limited atom–molecule sticking in this system. We place an upper limit of 5 % on the population of clustered He–trans‐Stilbene, consistent with a measured He–molecule collisional residence time of less than 1 μs. With its very low energy torsional modes, trans‐Stilbene is less rigid than any molecule previously buffer‐gas‐cooled into the Kelvin regime. We also report cooling and gas phase visible spectroscopy of Nile Red, a much larger molecule. Our data suggest that buffer gas cooling will be feasible for a variety of small biological molecules.     

Two‐component calculations of spin–orbit effects for a van der Waals molecule Rn2

Electronic structures of the weakly bound Rn₂ were calculated by the two‐component Møller–Plesset second‐order perturbation and coupled‐cluster methods with relativistic effective core potentials including spin–orbit operators. The calculated spin–orbit effects are small, but depend strongly on the size of basis sets and the amount of electron correlations. Magnitudes of spin–orbit effects on D_e (0.7–3.0 meV) and R_e (−0.4∼−2.2 Å) of Rn₂ are comparable to previously reported values based on configuration interaction calculations. A two‐component approach seems to be a promising tool to investigate spin–orbit effects for the weak‐bonded systems containing heavy elements. ©1999 John Wiley & Sons, Inc. Int J Quant Chem 72: 139–143, 1999     

Investigation of the distinction between van der Waals interaction and chemical bonding based on the PAEM‐MO diagram

In recent years, the basic problem of understanding chemical bonding, nonbonded, and/or van der Waals interactions has been intensively debated in terms of various theoretical methods. We propose and construct the potential acting on one electron in a molecule‐molecular orbital (PAEM‐MO) diagram, which draws the PAEM inserted the MO energy levels with their major atomic orbital components. PAEM‐MO diagram is able to show clear distinction of chemical bonding from nonbonded and/or vdW interactions. The rule for this is as follows. Along the line connecting two atoms in a molecule or a complex, the existence of chemical bonding between these two atoms needs to satisfy two conditions: (a) a critical point of PAEM exists and (b) PAEM barrier between the two atoms is lower in energy than the occupied major valence‐shell bonding MO which contains in‐phase atomic components (positive overlap) of the two considered atoms. In contrast to the chemical bonding, for a nonbonded interaction or van der Waals interaction between two atoms, both conditions (a) and (b) do not be satisfied at the same time. This is demonstrated and discussed by various typical cases, particularly those related to helium atom and H? H bonding in phenanthrene. There are helium bonds in HHeF and HeBeO molecules, whereas no H? H bonding in phenanthrene. The validity and limitation for this rule is demonstrated through the investigations of the curves of the PAEM barrier top and MO energies versus the internuclear distances for He₂, H₂, and He₂⁺ systems. © 2014 Wiley Periodicals, Inc.     

Design,synthesis, and characterization of main‐chain,aromatic polyesters based on 3,4‐ethylenedioxythiophene

A series of new thermoplastic polyesters based on 3,4‐ethylenedioxythiophene (EDOT) with flexible aliphatic spacers have been synthesized and characterized for the first time. The thermal properties of these polyesters based on EDOT are comparable to those of conventional polyesters based on the 1,4‐phenyl unit, indicating that EDOT is a viable replacement for the phenyl units. The glass‐transition and melting‐transition temperatures decrease monotonically with an increase in the spacer length. Theoretical calculations have revealed that the core angle for EDOT is comparable to that of unsubstituted thiophene and hence should be compatible with the formation of the mesophase. This has been confirmed experimentally by the synthesis of a main‐chain, thermotropic, liquid‐crystalline polyester based on EDOT that exhibits fluid birefringence. In fact, this is the first report in which a main‐chain, liquid‐crystalline polymer based on 3,4‐disubstituted thiophene has been successfully designed and synthesized. © 2006 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 44: 3479–3486, 2006     

Tunnelling Motion of HF Between the Two Oxygen Lone Pairs in the Dimethyl Ether–Hydrogen Fluoride Complex: A Pure Rotational Study

The rotational spectrum of the dimethyl ether–hydrogen fluoride complex was assigned by millimetre‐wave free‐jet absorption spectroscopy. Fine details of the spectrum were resolved by FT microwave molecular‐beam spectroscopy. The HF group acts as a proton donor and tunnels at a rate of 44178.2(7) MHz between the two oxygen lone pairs, which corresponds to an inversion barrier of 0.17(1) kcal mol^?1. The barrier to internal rotation of the two methyl groups is about 25 % lower relative to the isolated ether.     

Molecular engineering of conjugated polymers for solar cells and field‐effect transistors: Side‐chain versus main‐chain electron acceptors

Two model polymers, containing fluorene as an electron‐donating moiety and benzothiadiazole (BT) as an electron‐accepting moiety, have been synthesized by Suzuki coupling reaction. Both polymers are composed of the same chemical composition, but the BT acceptor can be either at a side‐chain (i.e., S‐polymer) or along the polymer main chain (i.e., M‐polymer). Their optical, electrochemical, and photovoltaic properties, together with the field‐effect transistor (FET) characteristics, have been investigated experimentally and theoretically. The FET carrier mobilities were estimated to be 5.20 × 10^?5 and 3.12 × 10^?4 cm² V^?1 s^?1 for the S‐polymer and M‐polymer, respectively. Furthermore, polymeric solar cells (PSCs) with the ITO/PEDOT:PSS/S‐polymer or M‐polymer:PC₇₁BM(1:4)/Al structure were constructed and demonstrated to show a power conversion efficiency of 0.82 and 1.24% for the S‐polymer and M‐polymer, respectively. The observed superior device performances for the M‐polymer in both FET and PSCs are attributable to its relatively low band‐gap and close molecular packing for efficient solar light harvesting and charge transport. This study provides important insights into the design of ideal structure–property relationships for conjugate polymers in FETs and PSCs. © 2011 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem, 2012     

Multiple‐pathways of carbon dioxide binding by a Lewis acid [B(C6F5)3] and a lewis base [P(tBu)3]: The energy landscape perspective

Using the reaction‐relevant two‐dimensional potential energy surface, an accurate reaction‐pathway mapping and ab inito molecular dynamics, it is shown that CO₂ capture by P(tBu)₃ and B(C₆F₅)₃ species has many nearly degenerate reaction‐routes to take. The explanation of that is in the topography of the transition state (saddle) area. An ensemble of asynchronous reaction‐routes of CO₂ binding is described in fine detail. © 2013 Wiley Periodicals, Inc.     

Improved model core potentials for the second- and third-row transition metals

New nonrelativistic and scalar-relativistic pseudopotentials for the second- and third-row transition metals have been developed. These improved Model Core Potentials were used in calculations for a variety of transition metal complexes to test their ability to reproduce experimental structures and vibrational frequencies.     

Curing kinetics and glass‐transition temperature of hexamethylene diisocyanate‐based polyurethane

The curing process of hexamethylene diisocyanate‐based polyurethane has been monitored by applying FTIR and DSC methods. A general relationship between glass‐transition temperature (T_g) and conversion of curing process has been obtained. This suggests that the reaction path and the relative reaction rates are independent of the curing temperature. The reaction kinetics of the system is analyzed using the T_g data converted to the conversion of the curing process. A set of experimental data and one theoretical model of T_g versus chemical conversion are presented to prove the assumption where a direct one‐to‐one relationship between the T_g (as measured) and the chemical conversion is obtained. Apparent activation energies (E_a) obtained by applying three different methods suggest good agreement. © 2000 John Wiley & Sons, Inc. J Polym Sci B: Polym Phys 38: 2213–2220, 2000