Fluorescence quenching in cyclic hydrogen-bonded complexes of 1H-pyrrolo[3,2-h]quinoline with methanol: cluster size effect

Laser induced fluorescence (LIF) excitation spectra of molecular complexes of 1H-pyrrolo[3,2-h]quinoline (PQ) with methanol (n= 1, 2, 3) as well as vibrational spectra of their electronic ground state are reported. The latter have been recorded in the mid-infrared region by fluorescence depletion (FDIR). The only PQ.methanol(n) complex clearly identified in the LIF spectrum is the triply hydrogen-bonded cyclic 1 ratio 2 aggregate. Its stoichiometry has been proven by the femtosecond multiphoton ionization detected infrared measurements [J. Am. Chem. Soc., 2006, 128, 10 000]. The structure of the 1 ratio 2 cluster is determined by means of FDIR spectroscopy in combination with ab initio and DFT calculations. No fluorescence was detected that could be attributed to the 1 ratio 1 cluster. This behaviour of the 1 ratio 1 complex is explained in terms of rapid excited state double proton transfer followed by a non-radiative relaxation. The n= 3 and heavier clusters are fluorescent. Their electronic spectra overlap, preventing the selective measurement of the FDIR spectra of individual complexes.     

Separation of different hydrogen-bonded clusters by femtosecond UV-ionization-detected infrared spectroscopy: 1H-pyrrolo[3,2-h]quinoline.(H2O)(n=1,2) complexes

Experimental and theoretical studies are presented for complexes of water with 1H-pyrrolo[3,2-h]quinoline (PQ), a bifunctional compound acting simultaneously as a hydrogen-bond donor and acceptor. A 1:1 complex, which is not fluorescent and only very short-lived in the electronically excited state, was analyzed by isolating the complex under supersonic jet conditions and characterizing its structure by infrared-induced ion depletion spectroscopy utilizing multiphoton ionization by femtosecond UV pulses (IR/fsMPI spectroscopy). On the other hand, a long-lived 1:2 complex was identified as the smallest microhydrate of PQ contributing to the laser-induced fluorescence excitation spectrum. Its structure was assigned by fluorescence-detected IR spectra and analyzed using density functional theory. The structures of the 1:1 and 1:2 clusters are assigned to species in which the water molecule(s) form a hydrogen-bonded solvent bridge between the two functional groups. In accord with calculations, both 1:1 and 1:2 PQ/water complexes reveal weaker hydrogen bonding than the analogous clusters of PQ with methanol.     

Synthesis and spectral characteristics of photochromic spirochromenes-2,3-dihydro-1H-pyrrolo[3,2-h]quinoline derivatives

Photochromic spirochromenes that differ from the standard indoline spirochromenes with respect to an angularly annelated pyridine ring were synthesized from 8-hydrazinoquinoline. The spectral characteristics of the merocyanine form of the compounds practically coincide with the characteristics of the analogous spirochromenes containing an annelated benzene ring.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 6, pp. 815–817, June, 1976.     

Synthesis and alkylation of 9-ethoxy-1H-pyrrolo[3,2-b]quinoline

9-Ethoxy-1H-pyrrolo[3,2-b]quinoline has been synthesized by the hydrogenation of 2-[2-(N,N-dimethylamino)vinyl]-3-nitro-4-ethoxyquinoline using Raney nickel. Alkylation using N,N-dimethylchloroethylamine and hydrolysis with HBr gave two isomers whose structures were established using PMR and mass spectrometry.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 5, pp. 633–635, May, 1989.     

Modeling proton transfer in imidazole-like dimers: a density functional theory study

A detailed theoretical study of proton transfer reaction in protonated imidazole, 1,2,3-triazole, and tetrazole dimers, the basic components of polymeric membrane used in proton exchange membranes fuel cells, has been carried out. In particular, several approaches based on density functional theory have been considered and their results compared with those provided by post-HF methods. From a computational point of view, these molecules appear to be a very challenging playground also for robust and recent functionals. Indeed none of the considered approaches provide results in close agreement with the reference post-HF data and a combined BMK//B3LYP model seems the only approach able to reproduce both the energetic and the structural features. From a chemical point of view, two new mechanisms of proton transfer in tetrazole dimers have been investigated and found to be more favorable than that previously hypothesized in literature. At the same time, the theoretical results show a direct connection between the obtained proton transfer barrier and the charge localized on the transferred hydrogen.     

Hydrogen-Bonded Cyclic Dimers at Large Compression: The Case of 1H-pyrrolo[3,2-h]quinoline and 2-(2′-pyridyl)pyrrole

1H-pyrrolo[3,2-h]qinoline (PQ) and 2-(2′-pyridyl)pyrrole (PP) are important systems in the study of proton-transfer reactions. These molecules possess hydrogen bond donor (pyrrole) and acceptor (pyridine) groups, which leads to the formation of cyclic dimers in their crystals. Herein, we present a joint experimental (Raman scattering) and computational (DFT modelling) study on the high-pressure behaviour of PQ and PP molecular crystals. Our results indicate that compression up to 10 GPa (100 kbar) leads to considerable strengthening of the intermolecular hydrogen bond within the cyclic dimers. However, the intramolecular N–H∙∙∙N interaction is either weakly affected by pressure, as witnessed in PQ, or weakened due to compression-induced distortions of the molecule, as was found for PP. Therefore, we propose that the compression of these systems should facilitate double proton transfer within the cyclic dimers of PQ and PP, while intramolecular transfer should either remain unaffected (for PQ) or weakened (for PP).     

Large chiral recognition in hydrogen-bonded complexes and proton transfer in pyrrolo[2,3-b]pyrrole dimers as model compounds

The chiral recognition in the formation of hydrogen-bonded (HB) dimers of 1,6a-dihydropyrrolo[2,3-b]pyrrole derivatives as well as in their proton-transfer processes have been studied by means of ab initio calculations. The heterochiral dimers are in general the most stable ones, but amphiprotic substituents that are able to form attactive interactions with twin groups revert this tendency. Energy differences up to 4.0 kcal/mol have been found favoring the homo- or heterochiral complexes. Two possible proton-transfer processes have been studied, the concerted one and the nonconcerted one. The compresion of the systems in the transition structures produce an increase in the energetic differences when compared to the corresponding minima complexes. A Steiner-Limbach relationship has been found for the geometrical properties of the HB in the minima and transition states calculated here. The electron density and its Laplacian at the bond critical point have been found to correlate with the HB distance.     

A density functional theory study of dimers of hydrophosphoryl compounds and proton transfer in them

The structures of dimers of several types of dimethylphosphinous acid (CH₃)₂POH and dimethylphosphine oxide (CH₃)₂P(O)H and dimers of the corresponding perfluorinated derivatives (CF₃)₂POH and (CF₃)₂P(O)H were studied in detail by density functional theory with the PBE gradient-corrected functional and the TZ2p basis set. Fairly strong dimeric associates (2.50–10.5 kcal/mol) were shown to form thanks to O-H···O, O-H···P, and C-H···O H-bonds and dipole-dipole interactions of polar phosphoryl groups P → O of two monomer molecules. The existence of C-H···O and the absence of P-H···O H-bonds in (CH₃)₂P(O)H dimers was substantiated by an AIM (atoms in molecules) analysis of their structures according to Bader. The reaction coordinates were calculated for synchronous transfer of two protons in (CH₃)₂POH and (CF₃)₂P(O)H dimers. Both rearrangements were shown to occur via symmetrical six-membered planar transition states with activation barriers of less than 20 kcal/mol, which was much lower than for intramolecular transfer in the corresponding monomers (47 kcal/mol for the (CH₃)₂P(O)H → (CH₃)₂POH pair). The tautomeric transitions between the phosphinous acid and phosphine oxide forms observed experimentally in nonpolar media under mild conditions in the absence of molecules that could act as proton carriers were shown to proceed as bimolecular reactions with the intermediate formation of the corresponding dimers.     

The adiabatic approximation in time-dependent density matrix functional theory: response properties from dynamics of phase-including natural orbitals

The adiabatic approximation is problematic in time-dependent density matrix functional theory. With pure density matrix functionals (invariant under phase change of the natural orbitals) it leads to lack of response in the occupation numbers, hence wrong frequency dependent responses, in particular α(ω→0)≠α(0) (the static polarizability). We propose to relinquish the requirement that the functional must be a pure one-body reduced density matrix (1RDM) functional, and to introduce additional variables which can be interpreted as phases of the one-particle states of the independent particle reference system formed with the natural orbitals, thus obtaining so-called phase-including natural orbital (PINO) functionals. We also stress the importance of the correct choice of the complex conjugation in the two-electron integrals in the commonly used functionals (they should not be of exchange type). We demonstrate with the Lo?wdin-Shull energy expression for two-electron systems, which is an example of a PINO functional, that for two-electron systems exact responses (polarizabilities, excitation energies) are obtained, while writing this energy expression in the usual way as a 1RDM functional yields erroneous responses.     

Plasmon excitations in sodium atomic planes: A time-dependent density functional theory study

The collective electronic excitation in planar sodium clusters is studied by time-dependent density functional theory calculations. The formation and development of the resonances in photoabsorption spectra are investigated in terms of the shape and size of the two-dimensional (2D) systems. The nature of these resonances is revealed by the frequency-resolved induced charge densities present on a real-space grid. For long double chains, the excitation is similar to that in long single atomic chains, showing longitudinal modes, end and central transverse modes. However, for 2D planes consisting of (n × n) atoms with n being up to 16, new 2D characteristic modes emerge regardless of the symmetries considered. For in-plane excitations, besides the equivalent end mode, mixed modes with contrary polarity occur. The relation between the frequency of the primary modes and the system size is similar to the case of a 2D electron gas but with a correction due to the realistic atomic structure. For excitations perpendicular to the plane there are corner, side center, bulk center, and circuit modes. Our calculation reveals the importance of dimensionality for plasmon excitation and how it evolves from 1D to 2D.     

Structure, spectroscopy, and reactivity properties of porphyrin pincers: a conceptual density functional theory and time-dependent density functional theory study

Porphyrin and pincer complexes are both important categories of compounds in biological and catalytic systems. The idea to combine them is computationally investigated in this work. By employment of density functional theory (DFT), conceptual DFT, and time-dependent DFT approaches, structure, spectroscopy, and reactivity properties of porphyrin pincers are systematically studied for a selection of divalent metal ions. We found that the porphyrin pincers are structurally and spectroscopically different from their precursors and are more reactive in electrophilic and nucleophilic reactions. A few quantitative linear/exponential relationships have been discovered between bonding interactions, charge distributions, and DFT chemical reactivity indices. These results are implicative in chemical modification of hemoproteins and understanding chemical reactivity in heme-containing and other biologically important complexes and cofactors.     

Comparison between the geometric and electronic structures and reactivities of [FeNO]7 and [FeO2]8 complexes: a density functional theory study

In a previous study, we analyzed the electronic structure of S = 3/2 [FeNO](7) model complexes [Brown et al. J. Am. Chem. Soc. 1995, 117, 715-732]. The combined spectroscopic data and SCF-X alpha-SW electronic structure calculations are best described in terms of Fe(III) (S = 5/2) antiferromagnetically coupled to NO(-) (S = 1). Many nitrosyl derivatives of non-heme iron enzymes have spectroscopic properties similar to those of these model complexes. These NO derivatives can serve as stable analogues of highly labile oxygen intermediates. It is thus essential to establish a reliable density functional theory (DFT) methodology for the geometry and energetics of [FeNO](7) complexes, based on detailed experimental data. This methodology can then be extended to the study of [FeO(2)](8) complexes, followed by investigations into the reaction mechanisms of non-heme iron enzymes. Here, we have used the model complex Fe(Me(3)TACN)(NO)(N(3))(2) as an experimental marker and determined that a pure density functional BP86 with 10% hybrid character and a mixed triple-zeta/double-zeta basis set lead to agreement between experimental and computational data. This methodology is then applied to optimize the hypothetical Fe(Me(3)TACN)(O(2))(N(3))(2) complex, where the NO moiety is replaced by O(2). The main geometric differences are an elongated Fe[bond]O(2) and a steeper Fe[bond]O[bond]O angle in the [FeO(2)](8) complex. The electronic structure of [FeO(2)](8) corresponds to Fe(III) (S = 5/2) antiferromagnetically coupled to O(2)(-) (S = 1/2), and, consistent with the extended bond length, the [FeO(2)](8) unit has only one Fe(III)-O(2)(-) bonding interaction, while the [FeNO](7) unit has both sigma and pi type Fe(III)-NO(-) bonds. This is in agreement with experiment as NO forms a more stable Fe(III)-NO(-) adduct relative to O(2)(-). Although NO is, in fact, harder to reduce, the resultant NO(-) species forms a more stable bond to Fe(III) relative to O(2)(-) due to the different bonding interactions.     

Failure of time-dependent density functional theory for long-range charge-transfer excited states: the zincbacteriochlorin-bacteriochlorin and bacteriochlorophyll-spheroidene complexes

It is well-known that time-dependent density functional theory (TDDFT) yields substantial errors for the excitation energies of charge-transfer (CT) excited states, when approximate standard exchange-correlation (xc) functionals are used, for example, SVWN, BLYP, or B3LYP. Also, the correct 1/R asymptotic behavior of CT states with respect to a distance coordinate R between the separated charges of the CT state is not reproduced by TDDFT employing these xc-functionals. Here, we demonstrate by analysis of the TDDFT equations that the first failure is due to the self-interaction error in the orbital energies from the ground-state DFT calculation, while the latter is a similar self-interaction error in TDDFT arising through the electron transfer in the CT state. Possible correction schemes, such as inclusion of exact Hartree-Fock or exact Kohn-Sham exchange, as well as aspects of the exact xc-functional are discussed in this context. Furthermore, a practical approach is proposed which combines the benefits of TDDFT and configuration interaction singles (CIS) and which does not suffer from electron-transfer self-interaction. The latter approach is applied to a (1,4)-phenylene-linked zincbacteriochlorin-bacteriochlorin complex and to a bacteriochlorophyll-spheroidene complex, in which CT states may play important roles in energy and electron-transfer processes. The errors of TDDFT alone for the CT states are demonstrated, and reasonable estimates for the true excitation energies of these states are given.     

Double hybrids and time-dependent density functional theory: An implementation and benchmark on charge transfer excited states

In this paper we present the implementation and benchmarking of a Time Dependent Density Functional Theory approach in conjunction with Double Hybrid (DH) functionals. We focused on the analysis of their performance for through space charge-transfer (CT) excitations which are well known to be very problematic for commonly used functionals, such as global hybrids.Two different families of functionals were compared, each of them containing pure, hybrid and double-hybrid functionals.The results obtained show that, beside the robustness of the implementation, these functionals provide results with an accuracy comparable to that of adjusted range-separated functionals, with the relevant difference that for DHs no parameter is tuned on specific compounds thus making them more appealing for a general use. Furthermore, the algorithm described and implemented is characterized by the same computational cost scaling as that of the ground state algorithm employed for MP2 and double hybrids.     

Synthesis, structure, and spectroscopic properties of chiral oxorhenium(V) complexes incorporating polydentate ligands derived from L-amino acids: a density functional theory/time-dependent density functional theory investigation

The oxorhenium(V) complexes [Re (V)O(L A)Cl 2] bearing the (N-2-pyridylmethyl) of l-valine (HL A (1)), l-leucine (HL A (2)), and l-phenylalanine (HL A (3)) and [Re (V)O(L B)Cl] containing the {(N-2pyridylmethyl)-(N-(5-nitro-2-hydroxybenzyl)} of l-valine (H 2L B (1)), l-leucine (H 2L B (2)), and l-phenylalanine (H 2L B (3)) are presented in this article. The complexes are isolated in enantiomeric pure form examined from X-ray structure determination. The complexes are characterized by spectroscopic and electrochemical methods. The molecular structures observed in the solid state are grossly preserved in solution ( (1)H, (13)C, and circular dichroism spectra). Gas-phase geometry optimization and the electronic structures of [Re (V)O(L A (1))Cl 2], [Re (V)O(L A (2))Cl 2], and [Re (V)O(L B (2))Cl] have been investigated with the framework of density functional theory. The absorption and circular dichroism spectra of the complexes were also calculated applying time-dependent density functional theory (TDDFT) using the conductor-like polarizable continuum solvent model to understand the origin of the electronic excitations. The chemical shift ( (1)H and (13)C) as well as (1)H- (1)H spin-spin coupling constant were also computed by the gauge-independent atomic orbital method, and the computed values are consistent with the experimental data.     

Lifting the Pt[100] surface reconstruction through oxygen adsorption: a density functional theory analysis

The adsorption of atomic oxygen on unreconstructed Pt[100]-(1 x 1) and reconstructed Pt[100]-(5 x 1) was modeled using density-functional theory in an attempt to understand the relative stability of the unreconstructed phase as a function of oxygen coverage. Our calculations showed that at zero temperature the (5 x 1) is more stable than the unreconstructed (1 x 1) phase at zero oxygen coverage. However, oxygen absorption on the Pt[100]-(5 x 1) phase removed the reconstruction, reversing the phase stability. Using thermochemical analysis, we show desorption of oxygen corresponding to a temperature near 730 K, consistent with experimentally observed desorption peaks for oxygen covered (1 x 1) surfaces. These results have ramifications for understanding the full Pt[100](1 x 1)-->Pt[100]hex-R0.7 degrees surface phase transition.     

Pyrroloindoles. 8. Electrophilic substitution in the 1H,5H-pyrrolo[2,3-f]indole and 3H,6H-pyrrolo[3,2-e]indole series

The principles of the electron density distribution in 1H,5H-pyrrolo [2,3-f]indole and 3H,6H-pyrrolo[3,2-e]indole molecules were determined on the basis of quantumchemical calculations. These results were confirmed by the results of the investigated electrophilic-substitution reactions. The reaction centers of these compounds proved to be the same positions as in indole, viz., the 3 and 7 and 1 and 8 positions, respectively. The impossibility of 1,8-disubstitution in the angular heteroring was demonstrated in the case of bulky substituents; this was explained by a steric effect.See [1] for communication 7.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 8, pp. 1086–1091, August, 1983.     

Absorption spectra of caffeic acid, caffeate and their 1:1 complex with Al(III): density functional theory and time-dependent density functional theory investigations

The UV-visible absorption spectra of caffeic acid, caffeate and of the predominant complex obtained in the presence of aluminum ion (1:1 stoichiometry) have been simulated by using the time-dependent density functional theory (TD-DFT) technique, taking into account solvent effects. Whereas the use of the B3LYP hybrid XC functional with the 6-31+G(d,p) basis set allows us to reproduce fairly well the essential features of the experimental spectra of caffeic acid and caffeate, it is necessary to introduce an effective core potential to properly describe the aluminum ion and its environment and to obtain a good agreement between theoretical and experimental spectra of the 1:1 complex. The ligand presents two potential complexing sites in competition. The results of our calculations show that the aluminum ion coordinates preferentially at the level of the catecholate group, and the [Al(H(2)O)(4)(CA)], [Al(H(2)O)(3)(OH)(CA)](-) and [Al(H(2)O)(4)(HCA)](+) complexed forms could coexist in aqueous solution at pH = 5.     

Molecular and vibrational structure of tetroxo d0 metal complexes in their excited states. a study based on time-dependent density functional calculations and Franck-Condon theory

We have applied time dependent density functional theory to study excited state structures of the tetroxo d(0) transition metal complexes MnO(4)(-), TcO(4)(-), RuO(4), and OsO(4). The excited state geometry optimization was based on a newly implemented scheme [Seth et al. Theor. Chem. Acc. 2011, 129, 331]. The first excited state has a C(3v) geometry for all investigated complexes and is due to a "charge transfer" transition from the oxygen based HOMO to the metal based LUMO. The second excited state can uniformly be characterized by "charge transfer" from the oxygen HOMO-1 to the metal LUMO with a D(2d) geometry for TcO(4)(-), RuO(4), and OsO(4) and two C(2v) geometries for MnO(4)(-). It is finally found that the third excited state of MnO(4)(-) representing the HOMO to metal based LUMO+1 orbital transition has a D(2d) geometry. On the basis of the calculated excited state structures and vibrational modes, the Franck-Condon method was used to simulate the vibronic structure of the absorption spectra for the tetroxo d(0) transition metal complexes. The Franck-Condon scheme seems to reproduce the salient features of the experimental spectra as well as the simulated vibronic structure for MnO(4)(-) generated from an alternative scheme [Neugebauer J. J. Phys. Chem. A 2005, 109, 1168] that does not apply the Franck-Condon approximation.