共查询到18条相似文献,搜索用时 62 毫秒
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Distance geometry and molecular dynamics are currently employed in determining molecular structures with interatomic distances from NMR NOESY experiment. Because of the flexibility of peptide, distances obtained from NMR are usually not sufficient to confine its structure. Both distance geometry and molecular dynamics will bias in the conformational space at this circumstance. Constraint Monte Carlo simulated annealing was established to solve this problem. Distance constraints were included into the ECEPP/2 force field by introducing a harmonic energy term. Conformational analysis of a pentapeptide with eight interatomic distances from NMR was carried out as a test. By comparison of the 100 conformers obtained from constraint simulated annealing and the 100 conformers from distance geometry calculation, it was found that constraint simulated annealing can cover the outcomes of distance geometry and at the same time give more con-formers fitting to the experimental data. The result shows that constraint Monte-Carlo simulated annealing is more valid in constructing peptide structures from NMR distances than currently employed methods when no sufficient distances from NMR are available. 相似文献
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多肽IS4溶液构象的进一步NMR研究 总被引:1,自引:1,他引:0
利用二维核磁共振技术对多肽IS4中除Ser-1外的所有残基质子进行了指认.积分NOESY谱中的相关峰可得到距离约束.二面角的约束来自偶合常数3JNHα.由慢交换质子可得到氢键的约束.在进行距离几何程序计算时利用这些约束可得到一组构象,用能量最优化程序优化后的结果表明,多肽IS4在CF3CD2OH中的构象为α-螺旋. 相似文献
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利用蒙特卡洛模拟方法对线形链和星形键在亚浓溶液区的标度律作了验证与讨论。我们的计算结果证明线形链渗透压Π与体积分数Φ在亚浓溶液区的标度规律是与德热纳的理论结果相一致的。同时还证明了星形链在亚浓溶液区具有与线形链相同的标度行为。 相似文献
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群多普利溶液构象的NMR研究 总被引:1,自引:0,他引:1
采用1D和2D NMR技术对血管紧张素转化酶抑制剂群多普利在CDCl3溶液中存在的两种构象进行了结构解析, 并结合分子动力学和密度泛函理论方法对其进行了结构的几何优化和能量计算. 结果表明, 群多普利因分子中酰胺键的旋转而形成反式构象A和顺式构象B, 两种构象的能量差为6.35 kJ/mol, 且顺式构象为该药物的优势构象. 相似文献
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邻香兰素氨基酸Schiff碱化合物的合成及构象研究 总被引:2,自引:0,他引:2
Schiff碱是指含有亚甲氨基-PC=N-的化合物,这类化合物因Schiff于1864年首先发现而得名。一些Schiff碱及其过渡金属配合物对肿瘤和病菌有一定的抑制作用^[1-3]。1970年,Hodnett^[4,5]制得几种Schiff碱,实验发现它们对老鼠肌肉内的Walker206瘤有抑制生长的作用,它们和某些金属形成的螯合物效果更好。Schiff碱配体可以作为螯合剂、生物活性剂、分析试剂和催化剂等,在科学研究和化工生产中有着广泛应用^[6,7]。本文报道一类新型的Schiff碱-邻香兰素氨基酸化合物的合成和构象研究,采用分子动力学模拟退火搜索方法对4人邻香兰素Schiff碱化合物的不同构型分子进行了构象研究,在搜索出的系列低能构象中分别找出全局最低能量构象,以此为初始构象进行了PM3量子化学计算。4个化合物的分子骨架结构如图1所示。 相似文献
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WANGYu-hong LIWei 《高等学校化学研究》2005,21(1):73-77
In this paper are reported the local minimum problem by means of current greedy algorithm for training the empirical potential function of protein folding on 8623 non-native structures of 31 globular proteins and a solution of the problem based upon the simulated annealing algorithm. This simulated annealing algorithm is indispensable for developing and testing highly refined empirical potential functions. 相似文献
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A global optimum location algorithm called Variable Step-Size Generalized Simulated Annealing(VSGSA) was applied to treating the data obtained by using an array of ion-electrodes in solutions containing mixtures of Na+, K+, Ca2+. Unlike traditional optimization algorithms such as simplex procedure, VSGSA can be used to determine the model parameters without any priori information about the analytical system under investigation and overcome the disadvantage of simplex method which might converge to local extrema depending on the starting positions. The algorithm was applied to po-tentiometric determination of ions in mixture solutions. 相似文献
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Martin Klessinger Paul Rademacher 《Angewandte Chemie (International ed. in English)》1979,18(11):826-837
The conformation of organic molecules may be determined by means of photoelectron (PE) spectroscopy if there are orbital interactions present which depend on a dihedral angle. Straightforward application of the method requires that all ionization bands of interest can be assigned unambiguously and that inductive effects and secondary orbital interactions do not occur or can be accounted for appropriately. In many cases, this method complements conventional methods of conformational analysis. PE conformational analysis is particularly suited to compounds containing vicinal lone pairs or π systems. 相似文献
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通用模拟退火用于稳健多元分析校正 总被引:4,自引:0,他引:4
模拟退火是一种全局优化算法,具有跨越局部最优点的机制,最小一乘是一种较常用的最小二乘更为稳健的优化准则,更适用于可能偏离正态分布的实际数据集,本文探讨了用最小一乘为准则并利用模拟退火方法同时测定多组分体系的可能性。应用于2-3组分药物体系分析,获得了满意的结果,本文还探讨了改变步长提高模拟退火算法优化精度的方法。 相似文献