Site-specific DNA functionalization through the tetrazene-forming reaction in ionic liquids

Development of multiple chemical tools for deoxyribonucleic acid (DNA) labeling has facilitated wide use of their functionalized conjugates, but significant practical and methodological challenges remain to achievement of site-specific chemical modification of the biomacromolecule. As covalent labeling processes are more challenging in aqueous solution, use of nonaqueous, biomolecule-compatible solvents such as an ionic liquid consisting of a salt with organic molecule architecture, could be remarkably helpful in this connection. Herein, we demonstrate site-specific chemical modification of unprotected DNAs through a tetrazene-forming amine–azide coupling reaction using an ionic liquid. This ionic liquid-enhanced reaction process has good functional group tolerance and precise chemoselectivity, and enables incorporation of various useful functionalities such as biotin, cholesterol, and fluorophores. A site-specifically labeled oligonucleotide, or aptamer interacting with a growth factor receptor (Her2) was successfully used in the fluorescence imaging of breast cancer cell lines. The non-traditional medium-promoted labeling strategy described here provides an alternative design paradigm for future development of chemical tools for applications involving DNA functionalization.

Site-specific chemical modification of unprotected DNAs through a phosphine-mediated amine–azide coupling reaction in ionic liquid.     

Characterizing ionic liquids as reaction media through a chemical probe

The triplet N,N-dimethylaminophenyl cation, a highly reactive but chemospecific electrophile, has been used as a probe for characterizing the properties of reaction media for a series of imidazolium ILs. With the N-hexyl-N-methyl imidazolium derivatives (not with the N-butyl analogues), hydrogen transfer leading to the aniline was the main process. Trapping by iodide occurred with an inverse dependence on viscosity. Trapping by pi nucleophiles exhibited a more complex behavior. This was explained by the effect of both the bulk viscosity and the structure of the IL cation on both steps of the reaction, namely, initial electrophilic attack and ensuing cation elimination or nucleophile addition. However, with an excellent nucleophile, such as thiophene, or when the latter step was intramolecular, as with 4-pentenol, the difference was obliterated and trapping became uniform. Incorporation of the probe into the IL cation (through insertion into the C--H bond alpha to the imidazolium ring) was demonstrated, while no addition to the anion tested (including bis(trifluoromethanesulfonimide)) took place.     

Ionic liquids as reaction medium in cellulose functionalization

The application of different ionic liquids (IL), namely 1-N-butyl-3-methylimidazolium chloride ([C(4)mim](+)Cl(-)), 3-methyl-N-butyl-pyridinium chloride and benzyldimethyl(tetradecyl)ammonium chloride were investigated as solvents for cellulose. The ILs used have the ability to dissolve cellulose with a degree of polymerization in the range from 290 to 1 200 to a very high concentration. Using [C(4)mim](+)Cl(-), no degradation of the polymer appears. By (13)C NMR measurement it was confirmed that this IL is a so-called non-derivatizing solvent. [C(4)mim](+)Cl(-) can be applied as a reaction medium for the synthesis of carboxymethyl cellulose and cellulose acetate. Without using any catalyst, cellulose derivatives with high degree of substitution could be prepared.(13)C NMR spectrum of cellulose dissolved in the IL [C(4)mim](+)Cl(-) (top). The (13)C NMR spectrum of cellulose dissolved in DMSO/tetrabutylammonium fluoride trihydrate is shown for comparison (bottom).     

Diels-Alder reaction in protic ionic liquids

Protic imidazolium ionic liquids have been tested as reaction media in the Diels-Alder reaction between cyclopentadiene and two dienophiles (dimethyl maleate and methyl acrylate). Good conversions and endo/exo selectivities were achieved. The activation of the dienophile by hydrogen bonding with protic imidazolium ILs was demonstrated.     

Green chemical functionalization of single-walled carbon nanotubes in ionic liquids

Single walled carbon nanotubes (SWNTs) are exfoliated and functionalized predominantly as individuals by grinding them for minutes at room temperature with aryldiazonium salts in the presence of ionic liquids (ILs) and K(2)CO(3). This constitutes an extremely rapid and mild green chemical functionalization process for obtaining the individualized nanotube structures. A number of ILs and various reaction conditions were surveyed. Raman, XPS, UV/vis/NIR spectroscopies, thermogravimetric analysis, and atomic force and transmission electron microscopies were used to characterize the products.     

The cosolvent-directed Diels-Alder reaction in ionic liquids

The rate constants of a bimolecular Diels-Alder reaction in binary mixtures of ionic liquids prepared in molecular solvents were analyzed to investigate the effect of viscosity of the medium and solvent effect. In this connection, we have carried out the Diels-Alder reaction of anthracene 9-carbinol with N-ethyl maleimide in binary mixtures of pyridinium-based ionic liquids, 1-butyl-pyridinium tetrafluoroborate, 1-butyl-3-pyridinium tetrafluoroborate, and 1-butyl-4-methyl pyridinium tetrafluoroborate in water, methanol, and chloroform at 298.15 K. The rates of reaction decreased, caused by gradually increasing the volume fraction of ionic liquids in solvents for all three ionic liquids. The kinetic results demonstrate a successful application of the pairwise interaction model built upon the concept of enforced hydrophobic hydration. A temperature-dependent study of kinetics of the Diels-Alder reaction was carried out in the binary mixtures of ionic liquids in water and was explained by the entropy-enthalpy compensation effect based upon activation parameters. Kinetics of the Diels-Alder reaction in highly aqueous medium was noted to be entropically driven.     

咪唑类离子液体中的有机氧化反应

简要概括了离子液体的种类和特点,重点介绍了咪唑类离子液体中的Baeyer-Villiger、Corey-Chayk-ovsky、醇、芳香烃、烷烃及含硫化合物的氧化反应.指出作为新型绿色溶剂的离子液体具有许多独特的物理化学性质,在多个领域具有重要的应用价值.     

Electrochemical functionalization of single walled carbon nanotubes with polyaniline in ionic liquids

Single walled carbon nanotubes (SWNTs) are covalently functionalized during the electropolymerization of aniline in ionic liquids. In our experiment, 1-butyl-3-methyl-imidazolium hexafluorophosphate (BMIPF₆) containing 1 M trifluoroacetic acid (CF₃COOH) was selected as the ionic liquid media to separate SWNTs and to perform the electropolymerization of aniline within. The morphology of the resulting composite material of SWNT and polyaniline (PANI) was studied by scanning electron microscopy (SEM). Covalent bonding was evidenced by the increase of intensity ratio of the D band vs. G band in the Raman spectrum, whilst SWNTs may also be incorporated as big dopant anions to the PANI backbone. This paper provides a novel method by which large amount of SWNTs (15 mg/ml) can be modified by aniline electrochemically. p-type conducting polymer and n-type SWNTs can be thus copolymerized and applied to organic photovoltaics.     

Oscillating electrochemical reaction in copper-containing imidazolium ionic liquids

An example of an electrochemical oscillator in ionic liquids is presented. Solutions of the ionic liquid 1-ethyl-3-methylimidazolium chloride, [C(2)mim]Cl, which contain both Cu(+) and Cu(2+) ions, show current oscillations during potentiostatic polarization. The oscillations were analyzed by the Quartz Crystal Microbalance (QCM) technique and by Electrochemical Impedance Spectroscopy (EIS). The electrochemical oscillations are of the N-NDR-type, because the low frequency end of the impedance spectrum has negative real impedances. The oscillating current leads to an oscillating growth speed of a metallic copper layer. Besides the presence of both Cu(+) and Cu(2+), the presence of chloride is a necessary, yet not a sufficient, condition for the occurrence of current oscillations. Oscillating currents were also observed for the ionic liquids 1-butyl-3-methylimidazolium chloride and 1-butyl-2,3-dimethylimidazolium chloride, but not for tributyltetradecylphosphonium chloride and N-butylpyridinium chloride.     

Copper bronze catalyzed Heck reaction in ionic liquids

Heck reaction of aryl iodides and activated aryl bromides catalyzed by copper bronze in tetrabutylammonium bromide as solvent and tetrabutylammonium acetate as base was developed. The effective catalysts are Cu nanoparticles deriving from the reaction of iodobenzene with copper bronze. These nanoparticles are very stable in tetraalkylammonium salts, are easily recycled, and can be stored for months without a loss of catalytic efficiency. [reaction: see text]     

Triphenylphosphite and ionic liquids: positive effects in the Heck cross-coupling reaction

Configurationally pure trans and high molecular weights are important for the optoelectronic properties of poly(p-phenylenevinylene) derivatives. As a promising approach for obtaining PPVs with these characteristics it was asserted that a simple and inexpensive monodentate phosphite, such as triphenylphosphite, is a good and efficient ligand for the Heck cross-coupling reaction. The catalyst activity is improved by the use of room temperature ionic liquids, obtaining quantitative yields and TONs up to 33,000.     

Understanding chemical reaction mechanisms in ionic liquids: successes and challenges

The focus of this article is an examination of chemical reaction mechanisms in ionic liquids. These mechanisms are compared with those pertaining to the same reactions carried out in conventional solvents. In cases where the mechanisms differ, attempts to provide an explanation in terms of the chemical and physicochemical properties of the reactants and of the components of the ionic liquids are described. A wide range of reactions from different branches of chemistry has been selected for this purpose. A sufficient background for student readers has been included. This tutorial review should also be of interest to kineticists, and to both new and experienced investigators in the ionic liquids field.     

Halide effects on the Heck reaction in room temperature ionic liquids

An interesting accelerating effect of catalytic amounts of certain halide ions on the Heck reaction in room temperature ionic liquids has been observed.     

Intramolecular Diels-Alder reaction in ionic liquids: effect of ion-specific solvent friction

The present work aims at understanding the role of viscosity or solvent friction in ionic liquids for an intramolecular Diels-Alder (IMDA) reaction of (E)-1-phenyl-4-[2-(3-methyl-2-butenyloxy)benzylidene]-5-pyrazolone (1). The results have been analyzed on the basis of the current theoretical models, and their failure to account for the observed trends is discussed in terms of "effective" viscosity or microviscosity. The rates of the reaction decrease with the increasing viscosity of the ionic liquids. As evident from the anionic effect, the solute-solvent specific interactions play a role in governing the kinetics of the reaction. The lower viscosities of the bistrifluoromethanesulfonimide [NTf2](-) based ionic liquids as compared to those based on tetrafluoroborate [BF4](-) anion fail to result in a corresponding acceleration in the rates of the reaction. These contradictory results indicate that solvent microviscosity, rather than the bulk macroscopic viscosity, should be the criteria for selecting the ionic liquids as reaction media.     

Kemp elimination: a probe reaction to study ionic liquids properties

The amino induced elimination of benzisoxazole into the relevant o-cyanophenolate ion (Kemp elimination) has been studied in [bmim][BF 4] solution at 298 K. To have information about the interactions between reactants and ionic liquid, the reaction has been carried out at different temperatures (293-313 K). Several primary, secondary, and tertiary amines have been used to study the effect of amine structure on the reaction rate. The collected data show that the amine structure seems to have a crucial role in determining the reaction rate. Furthermore, as different cation or anion structures of an ionic liquid can significantly affect its properties, the title reaction has been performed in four different ionic liquids ([bmim][PF6], [bmim][NTf 2], [bm 2im][NTf 2], and [bmpyrr][NTf 2]), using pyrrolidine and piperidine as model amines. An H-donor negative solvent (MeOH and [bmim][NTf 2]) effect on reaction rate was detected. Finally, a narrow range of activation parameters was calculated both for the reaction induced by different amines and for pyrrolidine and piperidine, in the presence of different ILs. This fact suggests the occurrence of an "early" transition state.     

First application of chiral ionic liquids in asymmetric Baylis-Hillman reaction

The first example of the use of chiral ionic liquids as reaction media in the asymmetric Baylis-Hillman reaction was described using N-alkyl-N-methylephedrinium salts. Good yields and significant enantiomeric excesses were obtained.     

Converting exo-selective Diels-Alder reaction to endo-selective in chloroloaluminate ionic liquids

The endo:exo ratio of 0.35:1 for the reaction of cyclopentadiene with methyl methacrylate observed in organic solvents can be converted to 3:1 in chloroaluminate ionic liquids with their effective reuse in Diels-Alder reactions.     

Nonaqueous ionic liquids: superior reaction media for the catalytic Heck-vinylation of chloroarenes

Nonaqueous ionic liquids, that is molten salts, constitute an activating and stabilizing noninnocent solvent for the palladium-catalyzed Heck-vinylation of all types of aryl halides. Especially with chloroarenes an improved activity and stability of almost any known catalyst system is observed as compared to conventional, molecular solvents (e.g. dimethylformamide (DMF), dimethylacetamide (DMAc), N-methyl-2-pyrrolidinone (NMP), or dioxane). Thus, even catalytic amounts of ligand-free PdCl2 yield stilbene from technically interesting chlorobenzene and styrene in high yield (turnover number (TON) = 18) without the need for further promoting salt additives such as tetraphenylphosphonium chloride. The scope of the new reaction medium is outlined for the first time for the vinylation of various aryl halides using different mono- and disubstituted olefins as well as a variety of known palladium(0) and palladium(II) catalyst systems. Furthermore, a novel means of catalyst recycling is presented and its scope is evaluated.