Theoretical Studies on the Mechanistic Insertions of Singlet Methylene and Halomethylene into Polar S‒H Bonds of Methanethiol,Ethanethiol, 1-Propanethiol and 2-Propanethiol

Abstract

The insertion of ¹CH₂, ¹CHF, ¹CF₂,¹CHCl, and ¹CCl₂ into primary and secondary polar S?H bonds of methanethiol, ethanethiol, 1-propanethiol, and 2-propanethiol have been investigated at HF (Hartree–Fock), MP2 (Møller–Plesset Perturbation Theory), and DFT (density functional theory) levels using 6-31G (d, p) basis set. The insertions follow a two-step mechanism. The potential energy surface exploration identifies ylide-like structures undergoing the 1,2-sigmatropic hydrogen shift concertedly giving the thioether product. But ¹CF₂ forms weak complexes involving 1,2-hydrogen shift. The barrier height in the concerted mechanism varies with the type of carbene moiety and S?H bond. The initial interaction seems to be a function of HOMO (highest occupied molecular orbital) and LUMO (lowest unoccupied molecular orbital) energies of thiols and carbenes, respectively. The natural bond orbital charge analysis showing a net charge flow from the substrate thiol to the reagent carbene at the transition states corroborates this fact.     

Theoretical study of the intermolecular hydrogen bond interaction for furan-HCl and furan-CHCl<Subscript>3</Subscript> complexes

The nature of the intermolecular hydrogen bond for the furan-HCl and furan-CHCI₃ complexes has been studied using ab initio calculations with MP2 level of theory. The new hydrogen bond type of C(CI)-H...O and π interactions are studied also. It is shown that, for the optimized geometries of furan-CHCI₃, C-H bond lengths contract and vibrational frequencies are blue-shifted, while for the furan-HCl complex, H-CI bond lengths elongate and vibrational frequencies are red-shifted. In addition, the NBO analysis indicates that, for the furan-CHCI₃ complex, the charge transfers from the lone pair of the proton acceptor to both σ *(CH) antibonding MO and lone pairs of CI atom.     

ESR studies of α-hydro p-substituted phenyl nitroxides and correlation analysis of their HFSC values

Well-resolved ESR spectra of a series of α-hydro p-substituted phenyl nitroxides were obtained in the fast ET reactions of p-substituted anilines with perfluoroacyl peroxides in F113 (CCl₂FCClF₂) solutions and one parameter (σ or σ^·) as well as dual-parameter (σ, σ^·) correlation analyses of their hyperfine splitting constants were conducted.     

Quasi-classical trajectory studies of the stereodynamics of the reaction O + HCl → ClO + H

The stereodynamics of the O + HCl → ClO + H reaction are investigated by quasi-classical trajectory (QCT) method. The calculations are carried out on the ground 1 ¹ A′ potential energy surface (PES). The orientation and alignments of the product rotational angular momentum for the title reaction are reported. The influence of collision energy on the product vector properties is also studied in the present work. Four (2π/σ)(dσ₀₀/dω _t ), (2π/σ)(dσ₂₀/dω _t ), (2π/σ)(dσ₂₂₊/dω _t ), and (2π / σ)(dσ₂₁₋/dω _t ), and have been calculated in the center of mass frame.     

Non-alkane behavior of cyclopropane and its derivatives: characterization of unconventional hydrogen bond interactions

Eight cyclopropane derivatives (Δ − R) have been modeled, with R = −H, −CH₃, −NH₂, −C ≡ CH, −C ≡ CCH₃, −OH, −F and −C ≡ N. All geometries have been fully optimized at the MP2/ AUG-cc-pVTZ level of calculations. Natural bond orbital analyses reveal extra p character (sp^λ, λ > 3) in the C-C bonds of the cyclopropyl rings. The banana-like σ _CC bonds in the rings are described in detail. Alkene-like complexes between Δ − R molecules and hydrogen fluoride are identified. These weakly bonded complexes are formed through unconventional hydrogen bond interactions between the hydrogen atom in the HF molecule and the carbon–carbon bonds in the cyclopropane ring. A topological analysis of the electronic charge density and its Laplacian has been used to characterize the interactions. The possible relevance of such complexes in the modeling of substrate–receptor interactions in some anti-AIDS drugs is discussed. Contribution to the Serafin Fraga Memorial Issue.     

The first ionization potentials and conjugation in benzene derivatives containing organosilicon, organogermanium, organotin, and organolead substituents

The inductive and resonance effects of silicon-, germanium-, tin-, and lead-containing and some organic substituents on the HOMO energies (E _HOMO) for 43 monosubstituted andp-disubstituted benzene derivatives were analyzed in the Koopmans approximation. A linear dependence between the perturbation energy δE and the resonanceσ _R ⁺ parameters of the substituents was established. The Koopmans approximation is a rough approximation for the compounds studied, since to provide for its rigorous fulfilment, the δE values must depend on the σ _R ⁰ parameters of the substituents. The principal regularities of increasing the σ,π-conjugation between the organoelement substituents and the π-system caused by a positive charge on the benzene ring were established. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 1, pp. 70–75, January 1997.     

Temperature-dependent synthesis, crystal structures, characterizations, and DFT calculations of two new copper(II) complexes with p-fluorobenzoic acid and 2,2′-bipyridine ligands

Two new copper(II) complexes, [Cu(p-FBA)₂(2,2′-bpy)]·(H₂O) (1) and [Cu(p-FBA)(2,2′-bpy)₂]·(p-FBA)₂ (2) {p-FBA = p-fluorobenzoic acid, 2,2′-bpy = 2,2′-bipyridine} have been obtained from an identical starting mixture using temperature as the only independent variable and characterized by X-ray single crystal diffraction as well as with infrared spectroscopy, elemental analysis, and thermogravimetric analysis. The results reveal that 1 has 1D infinite chain structure formed by O–H···O hydrogen bonds, while 2 features a 0D structure. Additionally, there exist C–H···O hydrogen bonds and π–π stacking interactions in 1, forming 2D supramolecular structure. Furthermore, density functional theory (DFT) calculations of the structures, stabilities, orbital energies, composition characteristics of some frontier molecular orbitals and Mulliken charge distributions of the [Cu(p-FBA)₂(2,2′-bpy)] of 1 and [Cu(p-FBA)(2,2′-bpy)₂]⁺ cation of 2 were performed by means of Gaussian 03W package and taking B3LYP/lanl2dz basis set.     

The conjugation and effective charges of the atoms at the triple bond in germylacetylenes

The integrated extinction coefficients (A) of the C≡C stretching modes in the IR spectra of 12 germylacetylenes Me₃GeC≡CR are determined by the resonance interactions of substituents with the triple bond. TheA ^1/2 values change linearly with change in the difference between the effective π-electron charges on the atoms at the triple bond and σ⁰ _R constants of organic substituents R. The average value of the σ⁰ _R constant of the Me₃Ge substituent in the compounds studied is +0.06. The resonance acceptor effect of the Me₃Ge substituent toward the triple bond (d,π-conjugation) is stronger than the donor effect (σ,π-conjugation). Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 8, pp. 1569–1574, August, 1998.     

Uncommon hydrogen bonds between a non-classical ethyl cation and π hydrocarbons: a preliminary study

This study undertakes a theoretical investigation into uncommon hydrogen bonds between the ethyl cation (C₂H₅ ⁺) and π hydrocarbons. Firstly, it considers the hyperconjugation effect of the ethyl cation, in which the non-localized hydrogen (H⁺) is taken to be a pseudoatom bound to the carbons of the methyl groups. The goal of the research is to use this electronic phenomenon to gain a better understanding of the (H⁺···π) and (H⁺···p-π) hydrogen bonds, which are considered uncommon because they are formed through the interaction of the H⁺ of the ethyl cation with the π bonds of the acetylene (C₂H₂) and ethene (C₂H₄), as well as with the pseudo-π bond of the cyclopropane (C₃H₆). In view of this, B3LYP/6-311++G(d,p) calculations were used to determine the geometries of the C₂H₅ ⁺···C₂H₂, C₂H₅ ⁺···C₂H₄, and C₂H₅ ⁺···C₃H₆ hydrogen-bonded complexes. Deformations of the bond lengths and bond angles of these systems were analyzed geometrically. Examination of the stretch frequencies and absorption intensities of the (H⁺···π) and (H⁺···p-π) hydrogen bonds has revealed red-shifts in π and p-π bonds. After structural modeling and vibrational characterization, analysis of the charge transfer following the ChelpG approach and subsequently quantification of the hydrogen bond energies (basis sets superpostition error and zero point vibrational energies being considered) were used to predict the strength of the (H⁺···π) and (H⁺···p-π) hydrogen bonds. In addition, the molecular topography was estimated using the quantum theory of atoms in molecules (QTAIM). QTAIM was chosen because of a desire to understand the (H⁺···π) and (H⁺···p-π) hydrogen bonds chemically on the basis of the quantity of charge density and interpretation of Laplacian fields. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Spectral studies of the mechanism of oxidation of Cp2Fe by ozone

The mechanism of oxidation of Cp₂Fe by ozone in CCl₄ was studied by chemiluminescence (CL), photoluminescence, IR, UV, and NMR spectral techniques, Ozone attacks Cp₂Fe at the Fe−C and C=C bonds to form peroxides CpOOFe, CpFeOOH, triplet (3 nπ^*) ketones (CL emitters), and organic acids. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 4, pp. 794–797, April, 1999.     

A New Semi-conductive Copper(I) Halide Coordination Polymer: Synthesis, Structure, and Theoretical Study

Abstract  A 1-D hybrid copper(I) halides, [(phen)Cu₃I₃] _n (phen = 1,10-phenanthroline)(1) with novel D6R (double six-membered rings) Cu₆I₆ cores, was synthesized by solvothermal reaction and characterized by single-crystal X-ray diffraction. In 1, nitrogen atoms from phen replace two I of CuI₄ tetrahedron to give distorted tetrahedral geometries (CuI₂N₂), then CuI₂N₂ tetrahedron shares corners via μ₃-I to generate an extended 1-D zigzag chain. Two zigzag chains combines with one 1-D (Cu₄I₄) _n chain containing D6R cores via μ₃-I-Cu (from cores) bonds to form the infinite 1-D ribbonlike polymer along the a-axis. Furthermore, the title compound is stabilized by conspicuous C–H···I hydrogen bonds, π–π and d¹⁰–d¹⁰ metallic interactions. Experimental and theoretical optical property investigation indicates that 1 possesses semiconductor property. DFT calculation was executed to probe the electronic structure of 1. To our interest, phen act as a property control species with its π* electrons appear in the forbidden band. Graphical Abstract  A hybrid copper(I) halides [(phen)Cu₃I₃] _n containing D6R cores was structurally determined, which was stabilized by conspicuous C–H···I hydrogen bonds, π–π and d¹⁰–d¹⁰ metallic interactions and possesses semiconductor property. DFT calculation indicate phen act as a property control species with its π* electrons appear in the forbidden band. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

A study on the electronic effect of <Emphasis Type="Italic">para</Emphasis> substituents in the aryloxy ring of the hydrazone ligands on the vanadium centre in a family of mixed-ligand [V<Superscript>V</Superscript>O(ONO)(OO)] complexes

[V^IVO(acac)₂] reacts with the methanolic solutions of tridentate dibasic ONO donor hydrazone ligands derived from the condensation of benzoyl hydrazine with either 2-hydroxyacetophenone (H₂L¹) or its para-substituted derivatives (H₂L^2–4) (general abbreviation H₂L), in the presence of vanillin (Hvan) in equimolar ratio under aerobic conditions generating the mixed-ligand oxovanadium(V) complexes of the type [V^VO(L)(van)], (1)–(4) in good yield. All the complexes are diamagnetic and exhibit only ligand-to-metal charge transfer (l.m.c.t.) band near 510 nm in addition to intra-ligand (π → π*) transition band near 330 nm in CH₂Cl₂ solution. ¹H-n.m.r. spectra of the complexes in CDCl₃ solution indicate the presence of two isomeric forms [(1A), (1B); (2A), (2B); (3A), (3B) and (4A), (4B)] in different ratios, which is explained by the interchange of the two binding sites of van⁻ motif between its coordinated equatorial and axial positions. Complexes display two quasi-reversible one electron reduction peaks near +0.10 V and near +0.30 V versus s.c.e. in CH₂Cl₂ solution which are attributed to the successive reduction of V^V→ V^IV and the V^IV→ V^III motifs, respectively. λ_max (for l.m.c.t. transition), and the two reduction potential values (E _1/2)^I (average of the first step anodic and first step cathodic peak potentials) and (E _1/2)^II (average of the second step anodic and second step cathodic peak potentials) of the complexes, are found to be linearly related to the Hammett constants (σ) of the substituents in the aryloxy ring of the hydrazone ligands. λ_max, (E _1/2)^I and (E _1/2)^II values show large dependence: dλ_max/dσ = 37.29 nm, d(E _1/2)^I/dσ = 0.21 V and d(E _1/2)^II/dσ = 0.21 V, respectively, on σ.     

Studies on mono- and dinuclear bisoxime copper complexes with different coordination geometries

Two new mono- and dinuclear Cu(II) complexes, namely [CuL¹]·0.5H₂O (1) and [(Cu₂(L²)₂)(DMF)]·0.5DMF (2) (H₂L¹ = 1,2-bis{[(Z)-(3-methyl-5-oxo-1-phenyl-1H-pyrazolidin-4(4H)-yl)(phenyl)]methylene-aminooxy}ethane; H₂L² = 1,3-bis{[(Z)-(3-methyl-5-oxo-1-phenyl-1H-pyrazolidin-4(4H)-yl)(phenyl)] methyleneaminooxy}propane), have been synthesized and characterized by X-ray crystallography. The unit cell of complex 1 contains two crystallographically independent but chemically identical [CuL¹] molecules and one crystalline water molecule, showing a slightly distorted square-planar coordination geometry and forming a wave-like pattern running along the a-axis via hydrogen bonding and π···π stacking interactions. Complex 2 has a dinuclear structure, comprising two Cu(II) atoms, two completely deprotonated phenolate bisoxime (L²)²⁻ moieties (in the form of enol), and both coordinated and hemi-crystalline DMF molecules. Complex 2 has square-planar and square-pyramidal geometries around the two copper centers, whose basic coordination planes are almost perpendicular and form an infinite three-dimensional supramolecular network structure involving intermolecular C–H···N, C–H···O, and C–H···π(Ph) hydrogen bonding and π···π stacking interactions of neighboring pyrazole rings.     

Electronic absorption spectra of charge-transfer complexes and effects of substituents in radical cations

The effects of X substituents on the energies of charge-transfer bandshv _CT in electronic absorption spectra of charge-transfer complexes of π-, n-, or σ-donors (DX) with π- or σ-acceptors (A) as well as on the ionization potentialsI _D of individual DX molecules are described by the equationhv _CT(l _D)=a +bσ₁ +cσ _R ⁺ +dσ_α. When DX and A are fixed, the inductive (bσ₁), resonance (cσ _R ⁺ ), and polarization (dσ_α) contributions tohv _CT andI _D are virtually identical. The electronic structure of the D^.+X donor component of the compact [A^.−, D^.+X] radical-ionic pair in a solution is similar to that of the radical cation generated upon photoionization of the individual DX molecule in the gaseous phase. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 6, pp. 1002–1006, June, 2000.     

The Lewis basicity of nitrido complexes. Theoretical investigation of the structure and bonding of Cl2 (PH3)3ReN–X (X = BH3, BCl3, BBr3, AlH3, AlCl3, AlBr3, GaH3, GaCl3, GaBr3, O, S, Se, Te)

Quantum chemical calculations using gradient-corrected density functional theory (B3LYP) and ab initio methods at the MP2 level are reported for the geometries and bond energies of the nitrido complexes Cl₂ (PH₃)₃ReN–X (X = BH₃, BCl₃, BBr₃, AlH₃, AlCl₃, AlBr₃, GaH₃, GaCl₃, GaBr₃, O, S, Se, Te). The theoretical geometries are in excellent agreement with experimental values of related complexes which have larger phosphine ligands. The parent nitrido complex Cl₂(PH₃)₃ReN is a very strong Lewis base. The calculated bond dissociation energy of Cl₂(PH₃)₃ReN–AlCl₃ is D _e = 43.7 kcal/mol, which is nearly as high as the bond energy of Me₃N–AlCl₃. The donor-acceptor bonds of the other Cl₂(PH₃)₃ReN–AY₃ complexes are also very strong. Even stronger N–X bonds are predicted for most of the nitrido-chalcogen complexes, which exhibit the trend X = O ≫ S > Se > Te. Analysis of the electronic structure shows that the parent compound Cl₂(PH₃)₃ReN has a Re–N triple bond. The Re–N σ bond is clearly polarized towards nitrogen, while the two π bonds are nearly nonpolar. The Re–N σ and π bonds become more polarized toward nitrogen when a Lewis acid or a chalcogen atom is attached. Bonding in AY₃ complexes should be described as Cl₂(PH₃)₃ReE≡N→AY₃, while the chalcogen complexes should be written with double bonds Cl₂(PH₃)₃Re=N=X. The charge-decomposition analysis indicates that the nitrogen-chalcogen bonds of the heavier chalcogen complexes with X = S, Se, Te can also be interpreted as donor-acceptor bonds between the nitrido complex acting as a Lewis base and the chalcogen atom with an empty p(σ) orbital acting as a Lewis acid. The nitrido oxo complex Cl₂(PH₃)₃ Re=N=O has a covalent N–O double bond. Received: 27 July 1998 / Accepted: 26 October 1998 / Published online: 16 March 1999     

Synthesis and photophysical properties of luminescent mononuclear and dinuclear gold(I) complexes with ethynyl-substituted phenanthrolines

A novel asymmetric dinuclear gold(I) complex with 3,6-diethynylphenanthroline, 3,6-bis{(PPh₃)–Au–C≡C}₂-phen, has been synthesized from Au(PPh₃)Cl (PPh₃ = triphenylphosphine) and 3,6-diethynyl-1,10-phenanthroline. The asymmetrical dinuclear gold(I) complex, 3,6-bis{(PPh₃)–Au–C≡C}₂-phen, demonstrated a weak phosphorescence assignable to the metal-perturbed ³ π–π* transition in the long wavelength region compared to an intense emission of the symmetrical dinuclear complex with 3,8-diethynylphenanthroline, 3,8-bis{(PPh₃)–Au–C≡C}₂-phen. A similar tendency of phosphorescent bands for the mononuclear gold(I) complexes with 5-ethynylphenanthroline, 5-{(PPh₃)–Au–C≡C}-phen, and 3-ethynylphenanthroline, 3-{(PPh₃)–Au–C≡C}-phen was observed. The absorption bands assignable to the π–π*(C≡Cphen) transition and phosphorescent emission assignable to the metal-perturbed ³ π–π* transition for these four gold(I) complexes were reasonably consistent with the results calculated by DFT and TD-DFT.     

Propane transformations on aluminum chloride—cobalt chloride clusters: a quantum chemical study

Density functional PBE/TZ2p quantum chemical calculations of activated complexes and pathways of model catalytic transformations of propane under the action of aluminum chloride-cobalt chloride ionic bimetallic complexes were carried out. The formation of an intermediate with a broken C-C bond can occur on the cationic cluster CoAlCl₄ ⁺ characterized by the strongest coordination of propane molecule. The activation barrier to the reaction is ΔG = 25.0 kcal mol⁻¹. Activation of alkane C-H bonds follows the alkyl pathway involving the formation of bimetallic alkyl complexes. The interaction of activated hydrocarbon fragments bound to transition metal atoms in cobalt-chloroaluminate clusters can result in alkane metathesis products (in this case, ethane and a polymetallic cluster containing an extendedchain alkyl radical).     

A Theoretical Study of Amine Bonding in Titanium Alkoxide Adducts

Summary. DFT calculations were carried out on Ti₂(OCH₃)₈ (NH₂CH₃)₂ and Ti₂(OCH₃)₈(NH₃)₂, which are model compounds for the previously isolated amine adducts Ti₂(OR)₈(NH₂ R′)₂. The calculations show that the Ti–N bond strength is weak; however, coordination of the amine to the metal center is supported by a N–H···O hydrogen bond of the amine with the neighboring alkoxo ligand. The Ti–N interaction is purely σ in nature, while the Ti–O interactions include both σ and π contributions. The lowest unoccupied molecular orbitals are mainly localized on Ti t_2g-like orbitals.     

A theoretical study of keto-enol isomerism and internal rotation in the H<Subscript>2</Subscript>Salen molecule,N,N′-ethylene-bis(salicylidenimine) — schiff base

Geometric parameters, vibrational spectra, and the energies of isomerization of seven keto-enol isomeric forms of the H₂Salen molecule (N,N′-ethylene-bis(salicylidenimine)) are calculated using electron density functional theory (DFT/B3LYP) and correlation consistent valence triple-zeta Gaussian basis sets (cc-pvtz). The isomer with two enol groups (EE₁) and C ₂ symmetry configuration is most energetically favorable. Calculations of the keto-enol equilibrium show that at T ≥ 250 K the H₂Salen gas phase is a mixture of four conformers (rotamers of the main isomer EE₁). The contribution of other isomers does not exceed a few percent. The NBO analysis reveals that the system of π-conjugated bonds involves not only the atoms of the benzene moiety, but also the O, C, and N atoms nearest to the benzene ring. The energy stabilization of the isomer EE₁ is shown to be due to the presence of two strong intramolecular N...H hydrogen bonds. Intramolecular N...H and O...H hydrogen bonds are observed in all other isomers. The bathochromic shift of O-H and N-H vibrational frequencies, caused by the effect of hydrogen bonds, is 520–790 cm⁻¹.