Vibrational spectroscopy of stichtite

Raman spectroscopy complimented with infrared spectroscopy has been used to study the mineral stitchtite, a hydrotalcite of formula Mg6Cr2(CO3)(OH)16.4H2O. Two bands are observed at 1087 and 1067 cm(-1) with an intensity ratio of approximately 2.5/1 and are attributed to the symmetric stretching vibrations of the carbonate anion. The observation of two bands is attributed to two species of carbonate in the interlayer, namely weakly hydrogen bonded and strongly hydrogen bonded. Two infrared bands are found at 1457 and 1381 cm(-1) and are assigned to the antisymmetric stretching modes. These bands were not observed in the Raman spectrum. Two infrared bands are observed at 744 and 685 cm(-1) and are assigned to the nu4 bending modes. Two Raman bands were observed at 539 and 531 cm(-1) attributed to the nu2 bending modes. Importantly the band positions of the paragenically related hydrotalcites stitchtite, iowaite, pyroaurite and reevesite all of which contain the carbonate anion occur at different wavenumbers. Consequently, Raman spectroscopy can be used to distinguish these minerals, particularly in the field where many of these hydrotalcites occur simultaneously in ore zones.     

Raman spectroscopy of newberyite Mg(PO3OH)·3H2O: a cave mineral

Newberyite Mg(PO3OH)·3H2O is a mineral found in caves such as from Moorba Cave, Jurien Bay, Western Australia, the Skipton Lava Tubes (SW of Ballarat, Victoria, Australia) and in the Petrogale Cave (Madura, Eucla, Western Australia). Because these minerals contain oxyanions, hydroxyl units and water, the minerals lend themselves to spectroscopic analysis. Raman spectroscopy can investigate the complex paragenetic relationships existing between a number of 'cave' minerals. The intense sharp band at 982 cm(-1) is assigned to the PO4(3-)ν1 symmetric stretching mode. Low intensity Raman bands at 1152, 1263 and 1277 cm(-1) are assigned to the PO4(3-)ν3 antisymmetric stretching vibrations. Raman bands at 497 and 552 cm(-1) are attributed to the PO4(3-)ν4 bending modes. An intense Raman band for newberyite at 398 cm(-1) with a shoulder band at 413 cm(-1) is assigned to the PO4(3-)ν2 bending modes. The values for the OH stretching vibrations provide hydrogen bond distances of 2.728 ? (3267 cm(-1)), 2.781 ? (3374 cm(-1)), 2.868 ? (3479 cm(-1)), and 2.918 ? (3515 cm(-1)). Such hydrogen bond distances are typical of secondary minerals. Estimates of the hydrogen-bond distances have been made from the position of the OH stretching vibrations and show a wide range in both strong and weak bonds.     

Raman and infrared spectroscopy of arsenates of the roselite and fairfieldite mineral subgroups

Raman spectroscopy complimented with infrared spectroscopy has been used to determine the molecular structure of the roselite arsenate minerals of the roselite and fairfieldite subgroups of formula Ca(2)B(AsO(4))(2).2H(2)O (where B may be Co, Fe(2+), Mg, Mn, Ni and Zn). The Raman arsenate (AsO(4))(2-) stretching region shows strong differences between the roselite arsenate minerals which is attributed to the cation substitution for calcium in the structure. In the infrared spectra complexity exists with multiple (AsO(4))(2-) antisymmetric stretching vibrations observed, indicating a reduction of the tetrahedral symmetry. This loss of degeneracy is also reflected in the bending modes. Strong Raman bands around 450 cm(-1) are assigned to nu(4) bending modes. Multiple bands in the 300-350 cm(-1) region assigned to nu(2) bending modes provide evidence of symmetry reduction of the arsenate anion. Three broad bands for roselite are found at 3450, 3208 and 3042 cm(-1) and are assigned to OH stretching bands. By using a Libowitzky empirical equation hydrogen bond distances of 2.75 and 2.67 A are estimated. Vibrational spectra enable the molecular structure of the roselite minerals to be determined and whilst similarities exist in the spectral patterns, sufficient differences exist to be able to determine the identification of the minerals.     

Vibrational spectra of trimethylsilanol. The problem of the assignment of the SiOH group frequencies

The assignment of the SiOH group vibrations of trimethylsilanol, which is still controversial, is proposed. This assignment is based on theoretical B3LYP force field scaled using the constants of the (CH3)3Si group optimized to fit experimental vibrational frequencies of (CH3)3SiF and (CD3)3SiF molecules as well as the OH stretching scale factor from methanol. The ab initio force field defined in this way gives a good agreement of the theoretical vibrational frequencies of trimethylsilanol with the positions of IR and Raman bands observed in the gas phase. This force field predicts the greatest contribution of the delta SiOH coordinates to the vibration with frequency of 804 cm(-1). The elimination of the coupling of the SiOH deformation with methyl rocking modes by the normal coordinate treatment of (CD3)3SiOH gives 832 cm(-1) for silanol deformation which is in a good agreement with the 834 cm(-1) value proposed earlier for the bending mode of free silanol groups. The geometry and force field of the open chain H3SiOH trimer is computed to model the change of the delta SiOH frequencies upon formation of the hydrogen-bonded polymers. This model predicts a significant shift of SiOH bending frequencies to the 1000-1200 cm(-1) range while those of SiOD to the 800-850 cm(-1) range. These predictions allow us to ascribe the 1087 cm(-1) band observed in the IR spectrum of crystalline (CH3)3SiOH and the Raman 775 cm(-1) band of the liquid (CH3)3SiOD to deformations of the hydrogen-bonded silanol groups.     

A vibrational spectroscopic study of the mixed anion mineral sanjuanite Al2(PO4)(SO4)(OH)·9H2O

The mineral sanjuanite Al2(PO4)(SO4)(OH)·9H2O has been characterised by Raman spectroscopy complimented by infrared spectroscopy. The mineral is characterised by an intense Raman band at 984 cm(-1), assigned to the (PO4)3- ν1 symmetric stretching mode. A shoulder band at 1037 cm(-1) is attributed to the (SO4)2- ν1 symmetric stretching mode. Two Raman bands observed at 1102 and 1148 cm(-1) are assigned to (PO4)3- and (SO4)2- ν3 antisymmetric stretching modes. Multiple bands provide evidence for the reduction in symmetry of both anions. This concept is supported by the multiple sulphate and phosphate bending modes. Raman spectroscopy shows that there are more than one non-equivalent water molecules in the sanjuanite structure. There is evidence that structural disorder exists, shown by the complex set of overlapping bands in the Raman and infrared spectra. At least two types of water are identified with different hydrogen bond strengths. The involvement of water in the sanjuanite structure is essential for the mineral stability.     

Raman microscopy of synthetic goudeyite (YCu6(AsO4)2(OH)6 x 3H2O)

Raman microscopy has been used to study the molecular structure of a synthetic goudeyite (YCu(6)(AsO(4))(3)(OH)(6) x 3H(2)O). These types of minerals have a porous framework similar to that of zeolites with a structure based upon (A(3+))(1-x)(A(2+))(x)Cu(6)(OH)(6)(AsO(4))(3-x)(AsO(3)OH)(x). Two sets of AsO stretching vibrations were found and assigned to the vibrational modes of AsO(4) and HAsO(4) units. Two Raman bands are observed in the region 885-915 and 867-870 cm(-1) region and are assigned to the AsO stretching vibrations of (HAsO(4))(2-) and (H(2)AsO(4))(-) units. The position of the bands indicates a C(2v) symmetry of the (H(2)AsO(4))(-) anion. Two bands are found at around 800 and 835 cm(-1) and are assigned to the stretching vibrations of uncomplexed (AsO(4))(3-) units. Bands are observed at around 435, 403 and 395 cm(-1) and are assigned to the nu(2) bending modes of the HAsO(4) (434 and 400 cm(-1)) and the AsO(4) groups (324 cm(-1)).     

IR, 1H NMR, mass, XRD and TGA/DTA investigations on the ciprofloxacin/iodine charge-transfer complex

Raman and infrared spectra of two polymorphous minerals with the chemical formula Fe3+(SO4)(OH)·2H2O, monoclinic butlerite and orthorhombic parabutlerite, are studied and the spectra assigned. Observed bands are attributed to the (SO4)2- stretching and bending vibrations, hydrogen bonded water molecules, stretching and bending vibrations of hydroxyl ions, water librational modes, Fe-O and Fe-OH stretching vibrations, Fe-OH bending vibrations and lattice vibrations. The O-H?O hydrogen bond lengths in the structures of both minerals are calculated from the wavenumbers of the stretching vibrations. One symmetrically distinct (SO4)2- unit in the structure of butlerite and two symmetrically distinct (SO4)2- units in the structure of parabutlerite are inferred from the Raman and infrared spectra. This conclusion agrees with the published crystal structures of both mineral phases.     

A Raman spectroscopic study of the uranyl sulphate mineral johannite

Raman spectroscopy at 298 and 77K has been used to study the secondary uranyl mineral johannite of formula (Cu(UO2)2(SO4)2(OH)2 x 8H2O). Four Raman bands are observed at 3593, 3523, 3387 and 3234cm(-1) and four infrared bands at 3589, 3518, 3389 and 3205cm(-1). The first two bands are assigned to OH- units (hydroxyls) and the second two bands to water units. Estimations of the hydrogen bond distances for these four bands are 3.35, 2.92, 2.79 and 2.70 A. A sharp intense band at 1042 cm(-1) is attributed to the (SO4)2- symmetric stretching vibration and the three Raman bands at 1147, 1100 and 1090cm(-1) to the (SO4)2- anti-symmetric stretching vibrations. The nu2 bending modes were at 469, 425 and 388 cm(-1) at 77K confirming the reduction in symmetry of the (SO4)2- units. At 77K two bands at 811 and 786 cm(-1) are attributed to the nu1 symmetric stretching modes of the (UO2)2+ units suggesting the non-equivalence of the UO bonds in the (UO2)2+ units. The band at 786cm(-1), however, may be related to water molecules libration modes. In the 77K Raman spectrum, bands are observed at 306, 282, 231 and 210cm(-1) with other low intensity bands found at 191, 170 and 149cm(-1). The two bands at 282 and 210 cm(-1) are attributed to the doubly degenerate nu2 bending vibration of the (UO2)2+ units. Raman spectroscopy can contribute significant knowledge in the study of uranyl minerals because of better band separation with significantly narrower bands, avoiding the complex spectral profiles as observed with infrared spectroscopy.     

Raman spectroscopic study of a hydroxy-arsenate mineral containing bismuth-atelestite Bi2O(OH)(AsO4)

The Raman spectrum of atelestite Bi2O(OH)(AsO4), a hydroxy-arsenate mineral containing bismuth, has been studied in terms of spectra-structure relations. The studied spectrum is compared with the Raman spectrum of atelestite downloaded from the RRUFF database. The sharp intense band at 834 cm(-1) is assigned to the ν1 AsO4(3-) (A1) symmetric stretching mode and the three bands at 767, 782 and 802 cm(-1) to the ν3 AsO4(3-) antisymmetric stretching modes. The bands at 310, 324, 353, 370, 395, 450, 480 and 623 cm(-1) are assigned to the corresponding ν4 and ν2 bending modes and BiOBi (vibration of bridging oxygen) and BiO (vibration of non-bridging oxygen) stretching vibrations. Lattice modes are observed at 172, 199 and 218 cm(-1). A broad low intensity band at 3095 cm(-1) is attributed to the hydrogen bonded OH units in the atelestite structure. A weak band at 1082 cm(-1) is assigned to δ(BiOH) vibration.     

Raman spectra of gas hydrates--differences and analogies to ice 1h and (gas saturated) water

It is generally accepted that Raman spectroscopic investigations of gas hydrates provide vital information regarding the structure of the hydrate, hydrate composition and cage occupancies, but most research is focused on the vibrational spectra of the guest molecules. We show that the shape and position of the Raman signals of the host molecules (H(2)O) also contain useful additional information. In this study, Raman spectra (200-4000 cm(-1)) of (mixed) gas hydrates with variable compositions and different structures are presented. The bands in the OH stretching region (3000-3800 cm(-1)), the O-H bending region (1600-1700 cm(-1)) and the O-O hydrogen bonded stretching region (100-400 cm(-1)) are compared with the corresponding bands in Raman spectra of ice Ih and liquid water. The interpretation of the differences and similarities with respect to the crystal structure and possible interactions between guest and host molecules are presented.     

Raman spectroscopy of uranyl rare earth carbonate kamotoite-(Y)

Raman spectroscopy at 298 and 77K has been used to study the mineral kamotoite-(Y), a uranyl rare earth carbonate mineral of formula Y(2)(UO(2))(4)(CO(3))(3)(OH)(8).10-11H(2)O. The mineral is characterised by two Raman bands at 1130.9 and 1124.6 cm(-1) assigned to the nu(1) symmetric stretching mode of the (CO(3))(2-) units, while those at 1170.4 and 862.3 cm(-1) (77K) to the deltaU-OH bending vibrations. The assignment of the two bands at 814.7 and 809.6 cm(-1) is difficult because of the potential overlap between the symmetric stretching modes of the (UO(2))(2+) units and the nu(2) bending modes of the (CO(3))(2-) units. Only a single band is observed in the 77K spectrum at 811.6 cm(-1). One possible assignment is that the band at 814.7 cm(-1) is attributable to the nu(1) symmetric stretching mode of the (UO(2))(2+) units and the second band at 809.6 cm(-1) is due to the nu(2) bending modes of the (CO(3))(2-) units. Bands observed at 584 and 547.3 cm(-1) are attributed to water librational modes. An intense band at 417.7 cm(-1) resolved into two components at 422.0 and 416.6 cm(-1) in the 77K spectrum is assigned to an Y(2)O(2) stretching vibration. Bands at 336.3, 286.4 and 231.6 cm(-1) are assigned to the nu(2) (UO(2))(2+) bending modes. U-O bond lengths in uranyl are calculated from the wavenumbers of the uranyl symmetric stretching vibrations. The presence of symmetrically distinct uranyl and carbonate units in the crystal structure of kamotoite-(Y) is assumed. Hydrogen-bonding network related to the presence of water molecules and hydroxyls is shortly discussed.     

Theoretical study of the changes in the vibrational characteristics arising from the hydrogen bonding between Vitamin C (L-ascorbic acid) and H2O

The vibrational characteristics (vibrational frequencies, infrared intensities and Raman activities) for the hydrogen-bonded system of Vitamin C (L-ascorbic acid) with five water molecules have been predicted using ab initio SCF/6-31G(d,p) calculations and DFT (BLYP) calculations with 6-31G(d,p) and 6-31++G(d,p) basis sets. The changes in the vibrational characteristics from free monomers to a complex have been calculated. The ab initio and BLYP calculations show that the complexation between Vitamin C and five water molecules leads to large red shifts of the stretching vibrations for the monomer bonds involved in the hydrogen bonding and very strong increase in their IR intensity. The predicted frequency shifts for the stretching vibrations from Vitamin C taking part in the hydrogen bonding are up to -508 cm(-1). The magnitude of the wavenumber shifts is indicative of relatively strong OH...H hydrogen-bonded interactions. In the same time the IR intensity and Raman activity of these vibrations increase upon complexation. The IR intensity increases dramatically (up to 12 times) and Raman activity increases up to three times. The ab initio and BLYP calculations show, that the symmetric OH vibrations of water molecules are more sensitive to the complexation. The hydrogen bonding leads to very large red shifts of these vibrations and very strong increase in their IR intensity. The asymmetric OH stretching vibrations of water, free from hydrogen bonding are less sensitive to the complexation than the hydrogen-bonded symmetric OH stretching vibrations. The increases of the IR intensities for these vibrations are lower and red shifts are negligible.     

Vibrational spectra of Na, K, Mn2+, Ni2+ and Zn2+ salts of 1,2,4,5-benzenetetracarboxylic (pyromellitic) acid--a short hydrogen bond evidence

Five salts of 1,2,4,5-benzenetetracarboxylic acid (pyromellitic acid), [C6H2(COO)4H4], have been synthesized and investigated by infrared and Raman spectroscopy and by single crystal X-ray diffraction methods: sodium salt [Na2(H2O)2][C6H2(COO)4H2], potassium salt [K(H2O)3][C6H2(COO)4H3] and transition metal salts [M(H2O)6][C6H2(COO)4H2], which M = Mn, Ni and Zn. Crystal structures of all five compounds show short intramolecular asymmetric hydrogen bonds (SHB) between adjacent carboxyl groups with O...O distance average of 2.40 A. The Raman and infrared spectra reported indicate the presence of short hydrogen bonds in all salts, in agreement with the X-ray data. The O-H stretching mode [nu(OH)] had been observed at about 2500 cm(-1). Deuterated analogues were synthesized and their Raman spectra show that nu(OH)/nu(OD) ratio average is about unit. The symmetric [nu(sym)(O..H..O)] and asymmetric [nu(asym)(O..H..O)] stretching modes have been attributed about 300 and 870 cm(-1), respectively, in all salts, and for deuterated analogues, the ratio nu(OH)/nu(OD) to nu(sym)(O..H..O, O..D..O) is close to unit like it occurs in nu(OH). The vibrational modes, mainly SHB modes, are tentatively assigned by molecular orbital ab initio calculations of pyromellitic acid and anions [C6H2(COO)4H3]- and [C6H2(COO)4H2]2-. Geometry optimizations showed a good agreement with experimental data. Frequency calculation confirms the assignment of specific vibrational modes. Ab initio calculations show that nu(C=O) and nu(sym)(COO) are strongly coupled with in plane OH bending [delta(OH)]. In Raman spectra of deuterated analogues is observed a frequency shift of these bands.     

A Raman and infrared spectroscopic study of the uranyl silicates--weeksite, soddyite and haiweeite: part 2

Raman spectroscopy has been used to study the molecular structure of a series of selected uranyl silicate minerals including weeksite K2[(UO2)2(Si5O13)].H2O, soddyite [(UO2)2SiO4.2H2O] and haiweeite Ca[(UO2)2(Si5O12(OH)2](H2O)3 with UO2(2+)/SiO2 molar ratio 2:1 or 2:5. Raman spectra clearly show well resolved bands in the 750-800 cm(-1) region and in the 950-1000 cm(-1) region assigned to the nu1 modes of the (UO2)2+ units and to the (SiO4)4- tetrahedra. Soddyite is characterized by Raman bands at 828.0, 808.6 and 801.8 cm(-1), 909.6 and 898.0 cm(-1), and 268.2, 257.8 and 246.9 cm(-1), attributed to the nu1, nu3, and nu2 (delta) (UO2)2+, respectively. Coincidences of the nu1 (UO2)2+ and the nu1 (SiO4)4- is expected. Bands at 1082.2, 1071.2, 1036.3, 995.1 and 966.3 cm(-1) are attributed to the nu3 (SiO4)4-. Sets of Raman bands in the 200-300 cm(-1) region are assigned to nu2 (delta) (UO2)2+ and UO ligand vibrations. Multiple bands indicate the non-equivalence of the UO bonds and the lifting of the degeneracy of nu2 (delta) (UO2)2+ vibrations. The (SiO4)4- tetrahedral are characterized by bands in the 470-550 cm(-1) and in the 390-420 cm(-1) region. These bands are attributed to the nu4 and nu2 (SiO4)4- bending modes. The minerals show characteristic OH stretching bands in the 2900-3500 and 3600-3700 cm(-1).     

Thermo-Raman spectroscopic study of the natural layered double hydroxide manasseite

Raman and thermo-Raman spectroscopy have been applied to study the natural hydrotalcite manasseite Mg(6)Al(2)(OH)(16)(CO(3)).4H(2)O. Hydrogen bond distances calculated using a Libowitzky-type empirical function varied between 2.61 and 3.00A. Stronger hydrogen bonds were formed by water units as compared to the hydroxyl units. Thermo-Raman spectroscopy enabled the identification of bands attributed to the hydroxyl units. Two Raman bands at 1062 and 1058 cm(-1) are assigned to symmetric stretching modes of the carbonate anion. Thermal treatment shifts these bands to higher wavenumbers indicating a change in the carbonate bonding.     

Structure and vibrational assignment of the enol form of 1,1,1-trifluoro-2,4-pentanedione

Molecular structure of 1,1,1-trifluoro-pentane-2,4-dione, known as trifluoro-acetylacetone (TFAA), has been investigated by means of Density Functional Theory (DFT) calculations and the results were compared with those of acetylacetone (AA) and hexafluoro-acetylacetone (HFAA). The harmonic vibrational frequencies of both stable cis-enol forms were calculated at B3LYP level of theory using 6-31G** and 6-311++G** basis sets. We also calculated the anharmonic frequencies at B3LYP/6-31G** level of theory for both stable cis-enol isomers. The calculated frequencies, Raman and IR intensities, and depolarization ratios were compared with the experimental results. The energy difference between the two stable cis-enol forms, calculated at B3LYP/6-311++G**, is only 5.89 kJ/mol. The observed vibrational frequencies and Raman and IR intensities are in excellent agreement with the corresponding values calculated for the most stable conformation, 2TFAA. According to the theoretical calculations, the hydrogen bond strength for the most stable conformer is 57 kJ/mol, about 9.5kJ/mol less than that of AA and about 14.5 kJ/mol more than that of HFAA. These hydrogen bond strengths are consistent with the frequency shifts for OH/OD stretching and OH/OD out-of-plane bending modes upon substitution of CH(3) groups with CF(3) groups. By comparing the vibrational spectra of both theoretical and experimental data, it was concluded that 2TFAA is the dominant isomer.     

Proton dynamics in the strong chelate hydrogen bond of crystalline picolinic acid N-oxide. A new computational approach and infrared, raman and INS study

Infrared, Raman and INS spectra of picolinic acid N-oxide (PANO) were recorded and examined for the location of the hydronic modes, particularly O-H stretching and COH bending. PANO is representative of strong chelate hydrogen bonds (H-bonds) with its short O...O distance (2.425 A). H-bonding is possibly well-characterized by diffraction, NMR and NQR data and calculated potential energy functions. The analysis of the spectra is assisted by DFT frequency calculations both in the gas phase and in the solid state. The Car-Parrinello quantum mechanical solid-state method is also used for the proton dynamics simulation; it shows the hydron to be located about 99% of time in the energy minimum near the carboxylic oxygen; jumps to the N-O acceptor are rare. The infrared spectrum excels by an extended absorption (Zundel's continuum) interrupted by numerous Evans transmissions. The model proton potential functions on which the theories of continuum formation are based do not correspond to the experimental and computed characteristics of the hydrogen bond in PANO, therefore a novel approach has been developed; it is based on crystal dynamics driven hydronium potential fluctuation. The envelope of one hundred 0 --> 1 OH stretching transitions generated by molecular dynamics simulation exhibits a maximum at 1400 cm-1 and a minor hump at approximately 1600 cm-1. These positions square well with ones predicted for the COH bending and OH stretching frequencies derived from various one- and two-dimensional model potentials. The coincidences with experimental features have to be considered with caution because the CPMD transition envelope is based solely on the OH stretching coordinate while the observed infrared bands correspond to heavily mixed modes as was previously shown by the normal coordinate analysis of the IR spectrum of argon matrix isolated PANO, the present CPMD frequency calculation and the empirical analysis of spectra. The experimental infrared spectra show some unusual characteristics such as large temperature effects on the intensity of some bands, thus presenting a challenge for theoretical band shape treatments. Our calculations clearly show that the present system is characterized by an asymmetric single well potential with no large amplitudes in the hydronium motion, which extends the existence of Zundel-type spectra beyond the established set of hydrogen bonds with large hydronic vibrational amplitudes.     

Vibrational spectroscopy of ferruginous smectite and nontronite

A comparison is made between the Raman and infrared spectra of ferruginous smectite and a nontronite using both absorption and emission techniques. Raman spectra show hydroxyl stretching bands at 3572, 3434, 3362, 3220 and 3102 cm(-1). The infrared emission spectra of the hydroxyl stretching region are significantly different to the absorption spectrum. These differences are attributed to the loss of water, absent in the emission spectrum, the reduction of the samples in the spectrometer and possible phase changes. Dehydroxylation of the two minerals may be followed by the loss of intensity of the hydroxyl stretching and hydroxyl deformation frequencies. Hydroxyl deformation modes are observed at 873 and 801 cm(-1) for the ferruginous smectite, and at 776 and 792 cm(-1) for the nontronite. Raman hydroxyl deformation vibrations are found at 879 cm(-1). Other Raman bands are observed at 1092 and 1032 cm(-1), assigned to the SiO stretching vibrations, at 675 and 587 cm(-1), assigned to the hydroxyl translation vibrations, at 487 and 450 cm(-1), attributed to OSiO bending type vibrations, and at 363, 287 and 239 cm(-1). The differences in the molecular structure of the two minerals are attributed to the Al/Fe ratio in the minerals.