Theoretical study of the complexes of horminone with Mg2+ and Ca2+ ions and their relation with the bacteriostatic activity

The coordination of the horminone molecule with hydrated magnesium and calcium divalent ions was studied by means of the density functional theory. All-electron calculations were performed with the B3LYP/6-31G method. The first layer of the water molecules surrounding the metallic cations was included. It was found that the octahedral [horminone(O(a)-O(d))-Mg-(H(2)O)(4)](2+) complex is more stable than [Mg(H(2)O)(6)](2+). That is, horminone is able to displace two water units from the hexahydrated complex. This behavior does not occur for Ca(2+). Consistently, [horminone(O(a)-O(d))-Mg-(H(2)O)(4)](2+) has a greater metal-ligand binding energy than [horminone(O(a)-O(d))-Ca-(H(2)O)(4)](2+). The preference of horminone by Mg(2+) is enlightened by these results. Moreover, its electronic structure, as shown by huge changes in the atomic populations, is strongly perturbed by Mg(2+). Indeed, horminone, bonded to [Mg(H(2)O)(4)](2+), is able to cross the bacterial membrane cell. Once inside, [horminone(O(a)-O(d))-Mg-(H(2)O)(4)](2+) binds to rRNA phosphate groups yielding [horminone(O(a)-O(d))-Mg-(H(2)O)(PO(4)H(2))(PO(4)H(3))(2)](+). These results give insights into how horminone may inhibit the initial steps of protein synthesis. The stability of the studied systems is accounted for in terms of the calculated structural and electronic properties: Mg-O and Ca-O bond lengths, charge transfers, and binding energies.     

Theoretical study of the models of Ca2+ and Mg2+ ions binding by the methylidene rhodanine neutral and anionic forms

The equilibrium geometry and energy parameters of the complexes of Ca²⁺ and Mg²⁺ with 5-methyl-2-thioxotiazolidin-4-one (methylidene rhodanine) and its anion in a 1:1 ratio in different conformations were calculated by the quantum-chemical method with the density functional theory on the level of hybrid functional B3LYP in the basis of atomic orbitals 6–31+G(d). The influence of metal ion size on the number of possible isomeric coordinations was indicated. The principles of stabilization and destabilization of the structures depending on their conformations al structure were described. Based on the calculated equilibrium geometry parameters of the complexes conformations the effect of complexation on the structure of rhodanine ligand was elucidated. In the framework of a polarizable continuum the relative stability of the possible tautomeric forms of methylidene rhodanine in water was investigated. A new structure of the methylidene rhodanine anion distinquished by a specific distribution of negative charge is suggested.     

铝,镁,锌—氟哌酸配合物的荧光特性及其脂溶性研究

探讨了介质ＰＨ值及Ａｌ＾３－，Ｍｇ＾２＋，Ｚｎ＾２＋离子对喹诺酮类药物氟哌酸荧光特性的影响。发现铝，镁及锌离子在不同ＰＨ值条件下与氟哌酸形成配合物而增强荧光，据此建立了用铝离子增强荧光测定氟哌酸含量的新方法。     

Tautomeric equilibrium, stability, and hydrogen bonding in 2'-deoxyguanosine monophosphate complexed with Mg2+

The tautomeric equilibrium and hydrogen bonding in nucleotide 2'-deoxyguanosine monophosphate that interacts with hydrated Mg2+ cation (4H2O.Mg[dGMP]) were studied at the MP2/cc-pVDZ//B3LYP/cc-pVDZ and B3LYP/aug-cc-pVTZ//B3LYP/cc-pVDZ levels of theory. The Mg2+ ion forms two inner-shell contacts with the nucleotide, similar to small phosphorylated molecules under physiological conditions. The presence of the phosphate group and the hydrated magnesium cation leads to a change in guanine tautomeric equilibrium of 4H2O.Mg[dGMP] in comparison to free guanine. The influence of the phosphate group and the magnesium cation on tautomeric equilibrium is larger in the anti conformation where the P=O-->Mg and Mg<--N7 coordinate bonds are formed. The canonical oxo form of guanine is more stable (by 6-8 kcal/mol) than the O6-hydroxo form in anti conformation. Thus, the interaction with Mg2+ ion is capable of further suppressing the likelihood of a spontaneous transient formation of the rare tautomer. In the syn conformation of 4H2O.Mg[dGMP], the interaction of the guanine nucleobase with the phosphate group and the magnesium cation is not as strong as in the anti conformation, and the relative stability of guanine tautomers is close to those in free guanine.     

Photoionization of the 2s, 2p and 3s subshells of Mg+

We present calculations of total and partial photoionisation cross sections for the 2s, 2p and 3s subshells of Mg⁺ from their ionisation thresholds up to a photon energy of 220 eV. Photoelectron angular distribution parameters are also calculated for the 2p subshell. Oscillator strengths are given for discrete structure, and calculated energy levels compared with experimental values. The significance of electron correlations and two electron excitation for this atomic ion is discussed.     

Gas‐phase hydration of Mg2+ complexes with deprotonated uracil,thymine, uridine,and thymidine

The gas‐phase hydration of Mg²⁺ complexes with deprotonated uracil ( U ), thymine ( T ), uridine ( U _r , uracil riboside), and thymidine ( T _dr , thymine deoxyriboside) was studied. The aim of the work was to analyze the hydration of product ions (eg, [2 U ‐H+Mg]⁺) formed as a result of the collision induced dissociation of the respective parent ion (eg, [3 U _r ‐H+Mg]⁺). The efficiency of gas‐phase hydration of the ions [2 U ‐H+Mg]⁺ and [2 T ‐H+Mg]⁺ was similar. However, the efficiency of gas‐phase hydration of the ion [ U + U _r ‐H+Mg]⁺ was much higher than that of gas‐phase hydration of the ion [ T + T _dr ‐H+Mg]⁺. On the basis of the mass spectra obtained and the performed molecular modelling, it was concluded that in the ion [ T + T _dr ‐H+Mg]⁺, we deal with a steric hindrance due to the presence of a sugar moiety, which affects water attachment. In the ion [ U + U _r ‐H+Mg]⁺, the position of the sugar moiety does not affect water attachment.     

Comparison of Ca2+ and Mg2+ binding to calmodulin. An enthalpy,entropy, and gibbs free energy analysis

A consistent set of G _B , H _B , and S _B parameters have been determined from ion specific electrode, calorimetric, and spectrophotometric studies for the binding of Ca²⁺ and Mg²⁺ to bovine calmodulin at pH=7.0 and an ionic strength I of 0.113M. A non-linear least squares analysis of calcium specific ion electrode data yields, on a molar basis, four calcium dissociation constants: 10^–7 for the first site, 10^–5 for the fourth site, and two constants between these values. Both calorimetric experiments and an indicator method provide evidence that Mg²⁺ binds to calmodulin, probably at the same sites as Ca²⁺, but with affinities about 100 times smaller: 4×10^–5 for the first site and 2×10^–3 for the fourth. Calorimetric titrations on Ca²⁺ binding to calmodulin in three buffers are consistent with 0.46 protons released upon binding at all four sites and yield an average H _B per site of 5.6 and 7.9 kJ-mol^–1 for Ca²⁺ and Mg²⁺, respectively. The entropy of the system increases by 524 and 361 J-K^–1-mol^–1 when Ca²⁺ and Mg²⁺, respectively, bind to four sites on calmodulin, i.e., the selectivity of calmodulin for Ca²⁺ is primarily derived from entropy effects. Further analysis based on elimination of the entropy term for the metal ions demonstrates that calmodulin bound to Ca²⁺ has a larger entropy than the unbound calmodulin; the opposite is true for calmodulin bound to Mg²⁺. These analyses are consistent with the hypothesis that Ca²⁺ forms tight complexes at all sites on calmodulin and that release of waters of hydration upon binding is the source of the increase of entropy in the system.     

Assembly of triangular trimetallic complexes by triamidophosphine ligands: spin-frustrated Mn2+ plaquettes and diamagnetic Mg2+ analogues with a combined through-space, through-bond pathway for 31P-31P spin-spin coupling

The reactions of 2 equiv of the ligand precursor P(CH2NHPh)3 or P[CH2NH-3,5-(CF3)2C6H3]3 with 3 equiv of Mn[N(SiMe3)2]2 provide high-yielding routes to the triangular trinuclear Mn(II) complexes [P(CH2NPh)3]2Mn3(THF)3.1.5THF and [P(CH2N-3,5-(CF3)2C6H3)3]2Mn3(THF)3. The solid-state structures of these paramagnetic complexes have approximate C3 symmetry. The magnetic moments from 300 to 1.8 K could be fit as a magnetic Jahn-Teller distorted isosceles triangle. These complexes exhibit spin frustration and possess an S = 1/2 ground state, as revealed by a plot of magnetization versus field at 1.8 K; at fields above 3.8 T, the occupation of an excited state with S = 3/2 becomes significant. The diamagnetic magnesium analogues were prepared by the reaction of the ligand precursor P(CH2NHPh)3, P[CH2NH-3,5-(CF3)2C6H3]3, or P(CH2NH-3,5-Me2C6H3)3 with nBu2Mg. The solid-state structures of [P(CH2NPh)3]2Mg3(THF)3.1.5THF and [P(CH2N-3,5-(CF3)2C6H3)3]2Mg3(THF)3 were determined. Solution 1H NMR spectroscopy was used to demonstrate that the solid-state structures are maintained in solution. The aryl group of the terminal amido donor exhibits slow rotation on the NMR time scale, and this was found to be an electronic effect. Solution 31P{1H} NMR spectroscopy revealed an unexpected 15 Hz coupling between phosphorus nuclei in these complexes. Calculations on a model complex using density functional theory demonstrates that this coupling occurs via a combined through-space, through-bond pathway.     

Hydrogen storage properties and neutron scattering studies of Mg2(dobdc)--a metal-organic framework with open Mg2+ adsorption sites

The hydrogen storage properties of Mg(2)(dobdc) (dobdc(4-) = 2,5-dioxido-1,4-benzenedicarboxylate), a metal-organic framework possessing hexagonal one-dimensional channels decorated with unsaturated Mg(2+) coordination sites, have been examined through low- and high-pressure adsorption experiments, infrared spectroscopy, and neutron scattering studies.     

pH电位滴定法测定溶液中钙、镁离子与聚天冬氨酸的生成稳定常数

pH电位滴定法测定溶液中钙、镁离子与聚天冬氨酸的生成稳定常数;pH电位滴定;聚天冬氨酸;配位化学;钙离子;镁离子     

Interaction of Ca2+ and Mg2+ with Ionophores Studied by Using a Pair-Potential Model Based on ab initio Calculations

Atom pair potentials are obtained from ab initio SCF-LCAO-MO calculations for model complexes of Mg²⁺ and Ca²⁺ with N, N-dimethylacetamide, and malonamide. The SCF-LCAO-MO interaction energies for 271 complexes of Mg²⁺ and 271 complexes of Ca²⁺ with these amides were fitted with a simple analytical potential by a least-square procedure. Interaction energies and optimal ion locations obtained by pair-potential calculations are compared with values obtained by ab initio calculations for some related amides. The application of the atom pair potentials to the structure of the Mg²⁺-complex [MgCl² (C³H⁷ON)⁶] of N-ethylacetamide is discussed.     

DSB显著提高羧酸盐驱油体系抗钙镁离子能力的研究

测定了工业品级的天然混合长链烷基羧酸盐(SDC)以及与3-(N,N-二甲基十二烷基胺)-2-羟基-丙磺酸(DSB)复配驱油体系的界面张力(ITFmin), 分别得出其抗钙镁离子的能力为400和5000 mg/L. 选择试剂级十二烷基羧酸钠与DSB复配, 测定了不同配比溶液的表面张力值和临界胶束浓度cmc, 结合长链烷基脂肪酸与钙离子的溶度积Ksp, 分析了对不溶性长链烷基羧酸盐形成的影响. 根据现场驱油体系配方, 计算了两者在溶液中的摩尔配比为4:1时的十二烷基羧酸盐在胶束中的摩尔分数xm1为0.51, 相互作用参数βm值为-3.11, 反映了两者有较强的相互作用. 采用量子化学方法, 对由1个十二烷基羧酸分子、1个DSB分子及1个二价钙离子组成的模型复合物进行了能量计算和电荷分布计算, 得出在长链烷基羧酸盐和DSB两者混合胶束的界面层中存在负电荷空穴, 提出二价金属离子被络合的模型, 合理地解释了实验事实.     

Synthesis of terpyridine ligands and their complexation with Zn2+ and Ru2+ for optoelectronic applications

A series of soluble conjugated ligands TT , FT , PT , and NT that contained terpyridyl terminal units were synthesized by Heck coupling. These ligands absorbed at 341–434 nm and emitted blue–green light, with maximum at 440–522 nm and photoluminescence quantum yields of 0.15–0.71 in solution. The double‐layer electroluminescent devices with the configuration of ITO/PEDOT/ligand FT , PT , or NT /Ca/Al exhibited a brightness of 43–63 cd/m². These ligands were further reacted with zinc(II) and ruthenium(II) ions and subsequent anion exchange to afford linear and supramolecular complexes. The photophysics of these complexes were investigated. A significant redshift of the emission maximum of the Zn complexes relative to the corresponding ligands was observed. The Ru complexes were used to fabricate photovoltaic devices with the structure ITO/PEDOT/Ru complex/P3HT:PCBM (1:1 wt/wt)/Ca/Al. The power conversion efficiency of these polymer–fullerene bulk heterojunction photovoltaic devices was up to 0.71%. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 7702–7712, 2008     

Ab initio study of ground state MH2, HMHe+ and MHe2(2+), M = Mg, Ca

The ground states of MH2, HMHe+ and MHe2(2+) (M = Mg, Ca) have been investigated using relativistically-corrected CCSD(T), IC-MRCI and IC-MRCI+Q, in conjunction with ANO-RCC (Mg, Ca) and aug-cc-pVQZ (H, He) basis sets. The ground states of all magnesium species are predicted to be linear, in agreement with predicted trends. Conversely, HCaHe+ and CaHe2(2+) were determined to be quasi-linear species, with linear-inversion barriers of ca. 115 and 3 cm(-1), respectively. For CaH2, a stationary point on the molecular potential energy surface corresponding to a non-linear equilibrium structure was not observed. Trends in bonding, dissociative potential well-depths and spectroscopic constants for these species have been considered with regards to isoelectronic and isovalent reasoning. These trends are consistent with helium and hydrogen forming electrostatic and covalent bonds with the metal ion, respectively.     

Ab initio MO calculations on the stable conformations and their binding energies of the ion-molecule complexes: Ion = H+, Li+, Na+, K+ Be2+, and molecule = CO and N2

The most stable conformation of ion-molecule complexes involving a CO molecule were surveyed by the use of Hartree-Fock (HF) MO and third-order Moller-Plesset perturbation (MP3) methods with a 6–31G* basis set ion = H⁺, Li⁺, Na⁺, K⁺, Bc²⁺, Mg²⁺, and Ca²⁺. The MP3 level of theory reveals the ion-CO conformation in which the ion bonds to a carbon atom of CO to be the most stable; these MP3 results are contrary to the HF ones. Binding energies of ion-molecule complexes involving CO and N₂ were computed; MP3 energies are in good agreement with the experimental ones. The computed binding energies of cation-N₂ are about one-third of cation-NH₃ due to the absence of dipole moment and the smaller polarizability of N₂. The decrease in binding energy in cation-CO and -N₂ complexes, with increasing cation size, is mainly caused by the decrease of the electrostatic and polarization stabilizations.