Hydrogen tunneling in peptidylglycine alpha-hydroxylating monooxygenase

The temperature dependence of the primary and secondary intrinsic isotope effects for the C-H bond cleavage catalyzed by peptidylglycine alpha-hydroxylating monooxygenase has been determined. Analysis of the magnitude and Arrhenius behavior of the intrinsic isotope effects provides strong evidence for the use of tunneling as a primary catalytic strategy for this enzyme. Modeling of the isotope effect data allows for a comparison to the hydrogen transfer catalyzed by soybean lipoxygenase in terms of environmental reorganization energy and frequency of the protein vibration that controls the hydrogen transfer.     

Separation of the primary and secondary kinetic isotope effects at a reactive center using starting material reactivities. Application to the FeCl3-Catalyzed oxidation of CH bonds with tert-butyl hydroperoxide

A method is reported for the determination of both the primary and secondary kinetic isotope effects at a reactive center based on staring material reactivities. This allows the determination of the separate KIEs in reactions for which neither product analysis nor absolute rate measurements are applicable. The methodology is applied to the FeCl₃-catalyzed oxidation of ethylbenzene with tert-butyl hydroperoxide, which exhibits both a primary isotope effect and a substantial secondary isotope effect.     

A steric deuterium isotope effect in 1,1,3,3-tetramethylcyclohexane

The equilibrium isotope effect (EIE) for the interconversion of the two chair isotopomers of 1-trideutero-1,3,3-trimethylcyclohexane was predicted using geometry and vibrational force constants derived from electronic structure theory at HF, B3LYP, and MP2 levels as input for the program THERMISTP. Agreement between theory and previously reported NMR results is very good (experimental K(eq) = 1.042 +/- 0.001 vs K(eq) = 1.0409 at MP2/6-311G* level, K(eq) = 1.0503 at HF/6-311G*, and K(eq) = 1.0417 at B3LYP/6-311G* level, all at 17 degrees C). In order to investigate the origin of this isotope effect, the calculated EIEs for the monodeuterated isotopomers were analyzed. It has been shown that the hydrogen atom on an axial methyl group which is unusually close to its counterpart on the other axial methyl is responsible for the large (steric) isotope effect in the compound studied.     

Working methods paper: Micro‐scale preparation and characterization of isotopically enriched monomethylmercury

A synthesis method for the micro‐scale laboratory preparation of isotopically enriched monomethylmercury (MMHg) has been successfully established. This compound is an important standard for species‐specific isotope dilution analysis. The isotopically enriched MMHg has been synthesized from commercially available mercury oxide (²⁰¹HgO) using methylcobalamin co‐enzyme as methylating agent. The time required is less than 2 h and the final yield is about 90%. The proposed method is faster than those previously reported in the literature. It allows work on a micro scale to control the use of expensive enriched isotope standard. It also allows control of unintentional formation of dimethylmercury. The enriched mercury‐containing reaction products were analyzed by capillary gas chromatography coupled to an inductively coupled plasma mass spectrometer after derivatization with sodium tetraethylborate. The isotopic composition, concentration, purity and stability of the synthesized, enriched MMHg have been investigated in order to establish standard protocols for MMHg isotope dilution analysis or isotope labeling incubation experiments. Copyright © 2002 John Wiley & Sons, Ltd.     

Isotope Substitution of Promiscuous Alcohol Dehydrogenase Reveals the Origin of Substrate Preference in the Transition State

The origin of substrate preference in promiscuous enzymes was investigated by enzyme isotope labelling of the alcohol dehydrogenase from Geobacillus stearothermophilus (BsADH). At physiological temperature, protein dynamic coupling to the reaction coordinate was insignificant. However, the extent of dynamic coupling was highly substrate‐dependent at lower temperatures. For benzyl alcohol, an enzyme isotope effect larger than unity was observed, whereas the enzyme isotope effect was close to unity for isopropanol. Frequency motion analysis on the transition states revealed that residues surrounding the active site undergo substantial displacement during catalysis for sterically bulky alcohols. BsADH prefers smaller substrates, which cause less protein friction along the reaction coordinate and reduced frequencies of dynamic recrossing. This hypothesis allows a prediction of the trend of enzyme isotope effects for a wide variety of substrates.     

Capabilities of superpure actinide and stable isotope product in Russian Federal Nuclear Center

The paper describes the production of highly enriched isotopes of uranium, plutonium and curium by means of electromagnetic separation for scientific and applied research in physics, chemistry, geology and other field. The equipment and radiochemical methods used allows to provide the isotopic pure samples in quantities sufficient to set up nuclear physics experiments, to produce reference materials and standard sources for calibration of radiometrical and mass spectrometrical equipment and for use in radionuclear metrology. Methods of fabrication of special sources or targets and layers of highly enriched isotopes on various substrated are presented. The brief information on developing stable isotope production program is also presented.     

Software ASPRO-NUC: Gamma-ray spectrometry,routine NAA,isotope identification and data management

The software ASPRO-NUC is based on new improved algorithms suggested and tested in the laboratory and intended for routine analysis. The package consists of the program ASPRO for gammaray spectra processing (peak search, multiplets deconvolution by means of method of moments, computation of correction coefficient for geometry and material of radioactive source), a program for isotope identification and a program for NAA by means of relative standardization. All output information is loaded into a data base (Paradox v.3.5 format) for supporting of queries, creation of reports, planning of routine analysis, estimation of expenses, supporting of network of analytical survey, etc. The ASPRO-NUC package also includes a vast nuclear data base containing evaluated decay and activation data (reactor, generator of fast neutrons, Cf-252 source). The data base environment allows for easy integration of a gamma spectrometer into a flexible information shell and the creation of a logical system for information management.     

A new concept for isotope ratio monitoring liquid chromatography/mass spectrometry

A new interface for the on-line coupling of a liquid chromatograph to a stable isotope ratio mass spectrometer has been developed and tested. The interface is usable for (13)C/(12)C determination of organic compounds, allowing measurement of small changes in (13)C abundance in individual analyte species. All of the carbon in each analyte is quantitatively converted into CO(2) while the analyte is still dissolved in the aqueous liquid phase. This is accomplished by an oxidizing agent such as ammonium peroxodisulfate. The CO(2) is separated from the liquid phase and transferred to the mass spectrometer. It is shown that the whole integrated process does not introduce isotope fractionation. The measured carbon isotope ratios are accurate and reproducible. The sensitivity of the complete system allows isotope ratio determination down to 400 ng of compound on-column. By-passing the high-performance liquid chromatography (HPLC) separation allows bulk isotopic analysis with substantially lower sample amounts than those required by conventional elemental analyzers. The results of the first applications to amino acids, carbohydrates, and drugs, eluted from various types of HPLC columns, are presented. The wide range of chromatographic methods enables the analysis of compounds never before amenable to isotope ratio mass spectrometry techniques and may lead to the development of many new assays.     

Optimization in multidimensional gas chromatography applying quantitative analysis via a stable isotope dilution assay

Trace level analyses in complex matrices benefit from heart-cut multidimensional gas chromatographic (MDGC) separations and quantification via a stable isotope dilution assay. Minimization of the potential transfer of co-eluting matrix compounds from the first dimension (¹D) separation into the second dimension separation requests narrow cut-windows. Knowledge about the nature of the isotope effect in the separation of labeled and unlabeled compounds allows choosing conditions resulting in at best a co-elution situation in the ¹D separation. Since the isotope effect strongly depends on the interactions of the analytes with the stationary phase, an appropriate separation column polarity is mandatory for an isotopic co-elution. With 3-alkyl-2-methoxypyrazines and an ionic liquid stationary phase as an example, optimization of the MDGC method is demonstrated and critical aspects of narrow cut-window definition are discussed.

Bond energies in polyunsaturated acids and kinetics of co-oxidation of protiated and deuterated acids

A computational program specially designed to analyze co-oxidation of substances in mixtures is suggested. The rigorous kinetic scheme of 32 reactions describing co-oxidation of isotope differing polyunsaturated fatty acids was computed to enlighten experimentally detected enormously large H/D isotope effects. The latter were shown to depend on the kinetic chain length and exhibit two extreme regimes of short and long chains which characterize isotope effects on the initiation and propagation chain reactions of hydrogen (deuterium) atom abstraction. No protective effect of deuterated polyunsaturated acids on the oxidation of protiated acids was detected. Protective effect of the deuterated compounds on the biologically important processes seems to be induced by the low yield of products formed in the chain termination reactions due to the low rate of initiation by deuterated compounds.     

Competitive 15N kinetic isotope effects of nitrogenase-catalyzed dinitrogen reduction

Biological N2 fixation is achieved under ambient conditions by enzymatic catalysis. The enzyme nitrogenase has been studied extensively, but the N2 chemical reduction step is, by far, not rate limiting and hard to examine. A new method was developed that allows studying the reduction transition state within the enzyme's complex kinetic cascade by means of the 15N kinetic isotope effect on the reaction's second-order rate constant, V/K. A value of 1.7% +/- 0.2% was measured.     

Multidimensional tunneling in the [1,5] shift in (Z)-1,3-pentadiene: how useful are Swain-Schaad exponents at detecting tunneling?

Rates, kinetic isotope effects (KIE), and Swain-Schaad exponents (SSE) have been calculated for a variety of isotopologues for the [1,5] shift in (Z)-1,3-pentadiene using mPW1K/6-31+G(d,p). Quantum mechanical effects along the reaction coordinate were incorporated with the zero-curvature tunneling (ZCT) model and with the multidimensional small curvature tunneling (SCT) model, which allows for coupling of modes perpendicular to the reaction coordinate. The latter model gives the best agreement with experimental rates and primary KIEs. The small quasiclassical primary KIE (2.6) is rationalized in terms of a nonlinear transition state. For sp3 to sp2 rehybridization, the quasiclassical alpha-secondary KIE shows an unusual inverse effect due to compression of the nonbonding hydrogens in the suprafacial transition state. SCT transmission coefficients (kappa) increase the rates by as much as one order of magnitude. Tunneling allows the reactant to evade 1-2.5 kcal/mol of the barrier depending on the isotope. Inclusion of tunneling in the secondary KIE increases it beyond the equilibrium isotope effect and converts the inverse effect (0.95) into a normal KIE (1.12). Tunneling was found to deflate the primary y SSE but by an amount too small to distinguish it from the quasiclassical SSE. On the other hand, when a specific labeling pattern is used, the difference between the quasiclassical secondary SSE (4.1) and the tunneling secondary SSE (2.3) may be sufficiently large to detect tunneling. The mixed secondary SSE shows even larger differences.     

web-based interactive data processing: application to stable isotope metrology

To address a fundamental need in stable isotope metrology, the National Institute of Standards and Technology (NIST) has established a web-based interactive data-processing system accessible through a common gateway interface (CGI) program on the internet site http://www. nist.gov/widps-co2. This is the first application of a web-based tool that improves the measurement traceability afforded by a series of NIST standard materials. Specifically, this tool promotes the proper usage of isotope reference materials (RMs) and improves the quality of reported data from extensive measurement networks. Through the International Atomic Energy Agency (IAEA), we have defined standard procedures for stable isotope measurement and data-processing, and have determined and applied consistent reference values for selected NIST and IAEA isotope RMs. Measurement data of samples and RMs are entered into specified fields on the web-based form. These data are submitted through the CGI program on a NIST Web server, where appropriate calculations are performed and results returned to the client. Several international laboratories have independently verified the accuracy of the procedures and algorithm for measurements of naturally occurring carbon-13 and oxygen-18 abundances and slightly enriched compositions up to approximately 150% relative to natural abundances. To conserve the use of the NIST RMs, users may determine value assignments for a secondary standard to be used in routine analysis. Users may also wish to validate proprietary algorithms embedded in their laboratory instrumentation, or specify the values of fundamental variables that are usually fixed in reduction algorithms to see the effect on the calculations. The results returned from the web-based tool are limited in quality only by the measurements themselves, and further value may be realized through the normalization function. When combined with stringent measurement protocols, two- to threefold improvements have been realized in the reproducibility of carbon-13 and oxygen-18 determinations across laboratories.     

web-based interactive data processing: application to stable isotope metrology

To address a fundamental need in stable isotope metrology, the National Institute of Standards and Technology (NIST) has established a web-based interactive data-processing system accessible through a common gateway interface (CGI) program on the internet site http://www. nist.gov/widps-co2. This is the first application of a web-based tool that improves the measurement traceability afforded by a series of NIST standard materials. Specifically, this tool promotes the proper usage of isotope reference materials (RMs) and improves the quality of reported data from extensive measurement networks. Through the International Atomic Energy Agency (IAEA), we have defined standard procedures for stable isotope measurement and data-processing, and have determined and applied consistent reference values for selected NIST and IAEA isotope RMs. Measurement data of samples and RMs are entered into specified fields on the web-based form. These data are submitted through the CGI program on a NIST Web server, where appropriate calculations are performed and results returned to the client. Several international laboratories have independently verified the accuracy of the procedures and algorithm for measurements of naturally occurring carbon-13 and oxygen-18 abundances and slightly enriched compositions up to approximately 150% relative to natural abundances. To conserve the use of the NIST RMs, users may determine value assignments for a secondary standard to be used in routine analysis. Users may also wish to validate proprietary algorithms embedded in their laboratory instrumentation, or specify the values of fundamental variables that are usually fixed in reduction algorithms to see the effect on the calculations. The results returned from the web-based tool are limited in quality only by the measurements themselves, and further value may be realized through the normalization function. When combined with stringent measurement protocols, two- to threefold improvements have been realized in the reproducibility of carbon-13 and oxygen-18 determinations across laboratories.     

Calculations on partition equilibria in liquid-liquid extraction systems,applied to the separation of metal ions from aqueous solutions

A program has been developed for the calculation of partition equilibria in the case when metal ions are extracted from an aqueous phase into an immiscible organic solvent containing a chelating reagent. Given the extraction constants and the initial concentrations, titration curves are constructed which show the extraction percentage of each ion in the presence of the others. The program is applied to hypothetical situations both in activation analysis and isotope dilution analysis.     

Chlorine kinetic isotope effects on the haloalkane dehalogenase reaction.

We have found chlorine kinetic isotope effects on the dehalogenation catalyzed by haloalkane dehalogenase from Xanthobacter autotrophicus GJ10 to be 1.0045 +/- 0.0004 for 1,2-dichloroethane and 1.0066 +/- 0.0004 for 1-chlorobutane. The latter isotope effect approaches the intrinsic chlorine kinetic isotope effect for the dehalogenation step. The intrinsic isotope effect has been modeled using semiempirical and DFT theory levels using the ONIOM QM/QM scheme. Our results indicate that the dehalogenation step is reversible; the overall irreversibility of the enzyme-catalyzed reaction is brought about by a step following the dehalogenation.     

Determination of zirconium traces in polymers by ICP-IDMS – a powerful and fast method for routine testing of zirconium residues in polyolefins

Zirconium trace analyses play an important role for polyolefins produced by modern catalytic processes with zirconium metallocenes. A reliable and fast routine testing method by inductively coupled plasma isotope dilution mass spectrometry (ICP-IDMS) was therefore developed, which allows the determination of zirconium in polymers down to the low ng/g level. With respect to its precision, accuracy, and time-consumption this method is suitable for routine testing of production processes. A spike solution, enriched in the stable isotope ⁹¹Zr, was prepared and used for the isotope dilution procedure, which has the advantage of being an internal “one point” calibration method. The polyolefin samples were dissolved by microwave assisted digestion with a mixture of concentrated HNO₃/HF.     

Quantitative analysis of a proteome by N-terminal stable-isotope labelling of tryptic peptides

Covalent modification of peptides and proteins with compounds containing stable isotopes (isotope tagging) has become an essential tool to detect dynamic changes in the proteome following external or internal influence; however, using terminal amino groups for global isotope labelling of tryptic peptides is challenged by the similar reactivity of the amino groups of lysine residues. We describe a new quantitative method based on selective tagging of the terminal amino groups of tryptic peptides with pentafluorophenyl esters containing stable isotopes. The labelled peptides were resolved by two-dimensional nanoflow liquid chromatography on weak anion-exchange and reversed-phase columns and then identified and quantified by tandem mass spectrometry. The method was applied to compare the proteomes of plasma membranes from proliferating and differentiated human colorectal adenocarcinoma (Caco-2) cells and endosomes purified from the livers of rats stimulated with insulin and epidermal growth factor. The comparison of the results obtained by isotope tagging and biochemical assays demonstrate that global isotope tagging with pentafluorophenyl esters allows accurate quantification of complex protein samples.     

(18)O/(16)O isotope effect on miscibility of isobutyric acid with water

The miscibility of isobutyric acid with water and the influence of the isotope substitution of oxygen (16O/18O) in water over a broad concentration range are reported. The system exhibits a phase diagram with an upper critical solution temperature (UCST) and a visible isotope effect thereon. The oxygen isotope substitution decreases the UCST, leading to better miscibility of isobutyric acid with water. The isotope shift, DeltaTc = Tc(18O) - Tc(16O), extrapolated to the 100% enrichment in 18O, is equal to -1.15 K; hence it is much smaller and opposite to that found for deuterium substitution. The origin of the observed miscibility isotope effect has been qualitatively discussed in terms of the condensed-phase isotope effect theory.