On the Possibility of Using UV Spectroscopy as a Measure of the Low-Barrier Hydrogen Bond

In many enzyme-catalyzed biochemical pathways, a short, strong hydrogen bond between an enzyme and substrate is an important structural feature. These bonds are termed low-barrier hydrogen bonds. In this paper, we show that UV spectra can be used as an experimental technique to determine if a system contains a low-barrier hydrogen bond (LBHB). We simulate, using the time-dependent view of UV spectroscopy, several different UV spectra: absorption, photodissociation, and emission, on systems containing a low-barrier hydrogen bond. We find several distinguishing spectral features in these UV spectra for systems that possess a LBHB.     

Molecular Tailoring Approach for the Estimation of Intramolecular Hydrogen Bond Energy

Hydrogen bonds (HBs) play a crucial role in many physicochemical and biological processes. Theoretical methods can reliably estimate the intermolecular HB energies. However, the methods for the quantification of intramolecular HB (IHB) energy available in the literature are mostly empirical or indirect and limited only to evaluating the energy of a single HB. During the past decade, the authors have developed a direct procedure for the IHB energy estimation based on the molecular tailoring approach (MTA), a fragmentation method. This MTA-based method can yield a reliable estimate of individual IHB energy in a system containing multiple H-bonds. After explaining and illustrating the methodology of MTA, we present its use for the IHB energy estimation in molecules and clusters. We also discuss the use of this method by other researchers as a standard, state-of-the-art method for estimating IHB energy as well as those of other noncovalent interactions.     

A DFT Study on Intramolecular Hydrogen Bond in Substituted Catechols and Their Radicals

Density functional theory(DFT)at B3LYP/6-31G(d,p) level was employed to calculate intramolecular hydrogen bond enthalpies (H1HB),O-H charge differencces,O-H bond lengths and bond orders for various substituted catechols and their radicals generated after H-abstraction.It was found that although the charge difference between hydrogen-bonded H and O played a role in determining H1HB,H1HB was mainly governed by the hydrogen bond length.As the oxygen-centedred radiocal has great tendency to form a chemical bond with the H atom,hydrogen bond lengths in catechloic radicals are systematically shorter than those in catechlos,hence,the H1HB for the former are higher than those for the latter.     

The Effect of Intramolecular Hydrogen Bond Type on the Gas-Phase Deprotonation of ortho-Substituted Benzenesulfonic Acids. A Density Functional Theory Study

Structural factors have been identified that determine the gas-phase acidity of ortho-substituted benzenesulfonic acid, 2-XC₆H₄–SO₃H, (X = –SO₃H, –COOH, –NO₂, –SO₂F, –C≡N, –NH₂, –CH₃, –OCH₃, –N(CH₃)₂, –OH). The DFT/B3LYP/cc-pVTZ method was used to perform conformational analysis and study the structural features of the molecular and deprotonated forms of these compounds. It has been shown that many of the conformers may contain anintramolecular hydrogen bond (IHB) between the sulfonic group and the substituent, and the sulfonic group can be an IHB donor or an acceptor. The Gibbs energies of gas-phase deprotonation Δ_rG⁰₂₉₈ (kJ mol^–1) were calculated for all compounds. It has been set that in ortho-substituted benzenesulfonic acids, the formation of various types of IHB is possible, having a significant effect on the Δ_rG⁰₂₉₈ values of gas-phase deprotonation. If the –SO₃H group is the IHB donor, then an ion without an IHB is formed upon deprotonation, and the deprotonation energy increases. If this group is an IHB acceptor, then a significant decrease in Δ_rG⁰₂₉₈ of gas-phase deprotonation is observed due to an increase in IHB strength and the A⁻ anion additional stabilization. A proton donor ability comparative characteristic of the –SO₃H group in the studied ortho-substituted benzenesulfonic acids is given, and the Δ_rG⁰₂₉₈ energies are compared with the corresponding values of ortho-substituted benzoic acids.     

Influence of the Intramolecular Hydrogen Bond on the Fluorescence of 2-ortho-Aminophenyl Pyridines

The dynamic nature of excited-state intramolecular proton transfer (ESIPT) and its effect on emission spectra is an attractive strategy to create multi-emissive dyes. Here we describe the behavior of a series of hydrogen-bonded triphenylpyridines with a set of donor–acceptor combinations that allowed us to perceive the influence of each substitution on the photophysical properties of the dyes. The susceptibility of these ESIPT moieties to pH variations was also studied, elucidating that the level of protonation had a significant effect on the emission color. The assignment of each emission band was made by using DFT and td-DFT calculations that were in agreement with the experimental results. This study emphasizes the versatility of triphenylpyridines that can be synthesized effortlessly with a logical and independent C-2, C-4 and C-6 substitution in order to have the desired ESIPT modulation and subsequent multi-emission response.     

The Role of Hydrogen Bond in Catalytic Triad of Serine Proteases

In order to investigate the origin of catalytic power for serine proteases, the role of the hydrogen bond in the catalytic triad was studied in the proteolysis process of the peptides chymotrypsin inhibitor 2 (CI2), MCTI-A, and a hexapeptide (SUB), respectively. We first calculated the free energy profile of the proton transfer between His and Asp residues of the catalytic triad in the enzyme-substrate state and transition state by employing QM/MM molecular dynamics simulations. The results show that a low-barrier hydrogen bond (LBHB) only forms in the transition state of the acylation of CI2, while it is a normal hydrogen bond in the acylation of MCTI-A or SUB. In addition, the change of the hydrogen bond strength is much larger in CI2 and SUB systems than in MCTI-A system, which decreases the acylation energy barrier significantly for CI2 and SUB. Clearly, a LBHB formed in the transition state region helps accelerate the acylation reaction. But to our surprise, a normal hydrogen bond can also help to decrease the energy barrier. The key to reducing the reaction barrier is the increment of hydrogen bond strength in the transition state state, whether it is a LBHB or not. Our studies cast new light on the role of the hydrogen bond in the catalytic triad, and help to understand the catalytic triad of serine proteases.     

Synthesis and Theoretical Study of Intramolecular Hydrogen Bond at Two Possible Positions in Pyrazolo[1,2‐b]phthalazine

Properties of dimethyl 3‐(alkylamino)‐5,10‐dioxo‐5,10‐dihydro‐1H‐pyrazolo[1,2‐b]phthalazine‐1,2‐dicarboxylate and its derivatives were studied by means of ab initio method. NO₂ derivative of title compound was synthesized and the nature of its intramolecular hydrogen bond (HB) was investigated. Furthermore, the topological properties of the electron density distributions for N? H···O intramolecular bridges were analyzed in terms of the Bader theory of atoms in molecules (AIM). The electron density (ρ) and Laplacian (?²ρ) properties, estimated by AIM calculations, indicated that O···H bond possesses low ρ and positive ?²ρ values which are in agreement with electrostatic character of the HBs, whereas N? H bonds have covalent character (?²ρ<0). Moreover, steric effect of the t‐Bu group on structure and topological parameters of pyrazolo[1,2‐b]phthalazine conformers was studied. Finally, the powerful method of Espinosa was used to obtain the H‐bond energy.     

Elucidating Solvent Effects on Strong Intramolecular Hydrogen Bond: DFT-MD Study of Dibenzoylmethane in Methanol Solution

The dynamic aspect of solvation plays a crucial role in determining properties of strong intramolecular hydrogen bonds since solvent fluctuations modify instantaneous hydrogen-bonded proton transfer barriers. Previous studies pointed out that solvent-solute interactions in the first solvation shell govern the position of the proton but the ability of the electric field due to other solvent molecules to localize the proton remains an important issue. In this work, we examine the structure of the O−H⋅⋅⋅O intramolecular hydrogen bond of dibenzoylmethane in methanol solution by employing density functional theory-based molecular dynamics and quantum chemical calculations. Our computations showed that homogeneous electric fields with intensities corresponding to those found in polar solvents are able to considerably alter the proton transfer barrier height in the gas phase. In methanol solution, the proton position is correlated with the difference in electrostatic potentials on the oxygen atoms of dibenzoylmethane even when dibenzoylmethane-methanol hydrogen bonding is lacking. On a timescale of our simulation, the hydrogen bonding and solvent electrostatics tend to localize the proton on different oxygen atoms. These findings provide an insight into the importance of the solvent electric field on the structure of a strong intramolecular hydrogen bond.     

A Critical Overview of Current Theoretical Methods of Estimating the Energy of Intramolecular Interactions

This article is probably the first such comprehensive review of theoretical methods for estimating the energy of intramolecular hydrogen bonds or other interactions that are frequently the subject of scientific research. Rather than on a plethora of numerical data, the main focus is on discussing the theoretical rationale of each method. Additionally, attention is paid to the fact that it is very often possible to use several variants of a particular method. Both of the methods themselves and their variants often give wide ranges of the obtained estimates. Attention is drawn to the fact that the applicability of a particular method may be significantly limited by various factors that disturb the reliability of the estimation, such as considerable structural changes or new important interactions in the reference system.     

A Spectroscopic Overview of Intramolecular Hydrogen Bonds of NH…O,S,N Type

Intramolecular NH…O,S,N interactions in non-tautomeric systems are reviewed in a broad range of compounds covering a variety of NH donors and hydrogen bond acceptors. ¹H chemical shifts of NH donors are good tools to study intramolecular hydrogen bonding. However in some cases they have to be corrected for ring current effects. Deuterium isotope effects on ¹³C and ¹⁵N chemical shifts and primary isotope effects are usually used to judge the strength of hydrogen bonds. Primary isotope effects are investigated in a new range of magnitudes. Isotope ratios of NH stretching frequencies, νNH/ND, are revisited. Hydrogen bond energies are reviewed and two-bond deuterium isotope effects on ¹³C chemical shifts are investigated as a possible means of estimating hydrogen bond energies.     

含分子内氢键的苯硫酚在水相中的Michael加成反应

苯硫酚的巯基是一个较强的亲核基团,对α,β-不饱和双键的Michael加成反应已有报道．但是当巯基的邻位存在与其形成氢键的基团时,如果按文献条件进行反应,或者反应无法进行,或者要使用反应条件苛刻的丁基锂,或者使用吡啶等毒性较大的反应溶剂,而且产率较低．本文选择     

热塑性淀粉中氢键及其对性能的影响

热塑性淀粉中的氢键对热塑性淀粉的性能有决定性的作用．本文利用红外光谱分析甘油或甲酰胺塑化热塑性淀粉中塑化剂和淀粉间的氢键形成情况,发现在淀粉中,与塑化剂形成氢键的主要是C-O-C基团中的氧原子和C-O-H基团中的氢原子;而且过量的塑化剂之间会形成氢键,减弱塑化剂与C-O-C中氧原子的氢键作用．与甘油相比,甲酰胺可以和淀粉形成更稳定的氢键．X-ray衍射研究了氢键对两种热塑性淀粉在不同湿度环境下的回生性能的影响．结果表明甲酰胺可以有效抑制淀粉回生．热动态力学分析(DMTA)研究发现,氢键使甲酰胺塑化热塑性淀粉的玻璃化转变温度更低．氢键使甲酰胺塑化热塑性淀粉强度和杨氏模量低,但伸长率和断裂能大．     

毛冬青皂苷甲的18,19-脱水皂苷元二甲酯的红外光谱分子内氢键效应的研究

有机化合物稀溶液的红外光谱用来研究分子内氢键是否存在,存在的形式等,以确定分子的构型和构象。毛冬青皂甙甲 IlexsaponinA 是从民间治疗冠心病有效药物毛冬青Ilex     

酰基硫脲分子内氢键与取代基效应的定量关系

对２３个Ｎ－二茂铁甲酰基－Ｎ’－芳基硫脲和４个Ｎ－苯甲酰基－Ｎ’－芳基硫脲的δβ－ＮＨ与各种取代胺的碱性强度ｐＫｂ及苯环下取代基常数σ进行了系统的定量关系研究。结果提示了此类化合物的分子内氢键与取代基效应之间的定量关系。     

氢键概念的形成和发展

1902年,瑞士化学家维尔纳对氯化铵结构的解释为氢键概念的形成奠定了基础。1920年,美国化学家拉提麦尔和罗德布什首先认识了水中的氢键：2个八隅体所持的氢核构成的“弱键(weak bond)”。1928年,美国化学家鲍林在解释[FHF]^-的结构时首次使用“氢键(hydrogen bond)”一词,但并未对氢键的概念进行明确定义。1939年,鲍林在《化学键的本质》中明确提出了氢键的概念,并解释了氢键的性质,自此,氢键的概念正式形成。近年来,科学家经过深入研究发现了氢键的新类型：π型氢键、双氢键、金属氢键和单电子氢键。随着科学思想和科学技术的发展,关于氢键的认识也会越来越深入。     

取代基效应对褐煤模型化合物离解焓影响的理论研究

为了探究褐煤热解过程中氧桥键C-O均裂这一重要反应, 选取α-O-4和β-O-4类结构单元作为褐煤模型化合物, 运用不同密度泛函计算了部分模型化合物中C-O的离解焓, 并以CBS-QB3作为理论基准值进行比较, 最后选取M05-2X进行离解焓计算. 结果显示, 对于选定的α-O-4和β-O-4类模型化合物, 其平均离解焓分别为51.0 kcal/mol和66.1 kcal/mol. 周围取代环境能显著影响C-O离解焓, 芳环上存在给电子基团(OH, OCH₃和CH₃)能降低C-O离解焓, 而吸电子基团COOH则能增加其离解焓. 然后深层次分析了取代基效应对C-O离解焓的影响. 此外, 分子内氢键的形成对离解焓也有很大的影响. C-O的离解焓与其键长没有特定的相关性, 不能简单的通过C-O键长来预测其离解焓.     

Study on the Intramolecular Hydrogen Bonds of Dibenzofurans, Xanthones and Anthraquinones with One or Two Positions Substituted by Hydroxyls

<正>The thermodynamic properties of dibenzofurans (DFs), xanthones (XTs) and an- thraquinones (AQs) with one and two positions substituted with hydroxyls in the ideal gas state at 298.15 K and 1.013×10~5 pa were calculated at the B3LYP/6-311G~* level using Gaussian 03 program. The isodesmic reactions were designed to calculate the standard free energy of formation (Δ_fG~e). Three types of hydrogen bonds exist in the three kinds of chemicals and their bond energies were ascertained as 7-15, 15-23 and 49-58 kJ·mol~(-1) respectively by comparing the Δ_fG~e values. Electronic density topology analysis was applied to validate the strength of bond.     

Energetic Ordering of Hydrogen Bond Strengths in Methanol-Water Clusters: Insights via Molecular Tailoring Approach

In this work, we examine the strength of various types of individual hydrogen bond (HB) in mixed methanol-water M_nW_m, (n+m=2 to 7) clusters, with an aim to understand the relative order of their strength, using our recently proposed molecular tailoring-based approach (MTA). Among all the types of HB, it is observed that the O_M−H…O_W HBs are the strongest (6.9 to 12.4 kcal mol⁻¹). The next ones are O_M−H…O_M HBs (6.5 to 11.6 kcal mol⁻¹). The O_W−H…O_W (0.2 to 10.9 kcal mol⁻¹) and O_W−H…O_M HBs (0.3 to 10.3 kcal mol⁻¹) are the weakest ones. This energetic ordering of HBs is seen to be different from the respective HB energies in the dimer i. e., O_M−H…O_M (5.0 to 6.0 kcal mol⁻¹)>O_W−H…O_M (1.5 to 6.0 kcal mol⁻¹)>O_M−H…O_W (3.8 to 5.6 kcal mol⁻¹)>O_W−H…O_W (1.2 to 5.0 kcal mol⁻¹). The plausible reason for the difference in the HB energy ordering may be attributed to the increase or decrease in HB strengths due to the formation of cooperative or anti-cooperative HB networks. For instance, the cooperativity contribution towards the different types of HB follows: O_M−H…O_W (2.4 to 8.6 kcal mol⁻¹)>O_M−H…O_M (1.3 to 6.3 kcal mol⁻¹)>O_W−H…O_W (−1.0 to 6.5 kcal mol⁻¹)>O_W−H…O_M (−1.2 to 5.3 kcal mol⁻¹). This ordering of cooperativity contribution is similar to the HB energy ordering obtained by the MTA-based method. It is emphasized here that, the interplay between the cooperative and anti-cooperative contributions are indispensable for the correct energetic ordering of these HBs.     

A time-dependent density functional theory study on the excited state behavior of a novel T2(OH)B molecule

A novel pH-sensitive fluorescent probe T₂(OH)B was selected to theoretically investigate its excited state hydrogen bonding effects and excited state intramolecular proton transfer (ESIPT) process. First, it was verified that one intramolecular hydrogen bond is formed spontaneously in T₂(OH)B itself. Given the geometrical changes, we further confirm that the hydrogen bond should be strengthened in the first excited state. When it comes to the photoexcitation process, we present the charge redistribution around hydrogen bonding moieties facilitate the ESIPT tendency. The increased electronic densities around acceptor promote the attraction of hydrogen protons. The potential energy barrier in the constructed potential energy curves reveals that the ESIPT process of the T₂(OH)B system should be ultrafast. And comparing several nonpolar solvents, we deem solvent polarity plays little role in the ESIPT reaction. Furthermore, we also search the S₁-state transition state structure along with the ESIPT path, based on which we simulate the intrinsic reaction coordinate path. We not only confirm the ESIPT mechanism presented in this work but also clarify the ultrafast excited state process and explain previous experiment. We sincerely hope that our theoretical work could guide novel applications based on the T₂(OH)B system in future.     

A theoretical study on the excited‐state intramolecular proton transfer mechanism of 4′‐dimethylaminoflavonol chemosensor

In this work, density functional theory (DFT) and time‐dependent density functional theory (TDDFT) methods are used to explore the excited‐state intramolecular proton transfer (ESIPT) mechanism of a novel system 4′‐dimethylaminoflavonol (DAF). By analyzing the molecular electrostatic potential (MEP) surface, we verify that the intramolecular hydrogen bond in DAF exists in both the S₀ and S₁ states. We calculate the absorption and emission spectra of DAF in two solvents, which reproduce the experimental results. By comparing the bond lengths, bond angles, and relative infrared (IR) vibrational spectra involved in the hydrogen bonding of DAF, we confirm the hydrogen‐bond strengthening in the S₁ state. For further exploring the photoexcitation, we use frontier molecular orbitals to analyze the charge redistribution properties, which indicate that the charge transfer in the hydrogen‐bond moiety may be facilitating the ESIPT process. The constructed potential energy curves in acetonitrile and methylcyclohexane solvents with shortened hydrogen bond distances demonstrate that proton transfer is more likely to occur in the S₁ state due to the lower potential barrier. Comparing the results in the two solvents, we find that aprotic polar and nonpolar solvents seem to play similar roles. This work not only clarifies the excited‐state behaviors of the DAF system but also successfully explains its spectral characteristics.