Raman and infrared spectra, ab initio and DFT calculations, and vibrational assignments for 2,3-cyclopentenopyridine

The structural properties of 2,3-cyclopentenopyridine (pyrindan) have been investigated using several spectroscopic and computational techniques. The Raman and infrared spectra of the molecule have been recorded and a full vibrational assignment was proposed on the basis of experimental and theoretical results. The vapor-phase Raman spectrum was successfully obtained at 260 degrees C without sample decomposition. Density functional theory (DFT) and M?ller-Plesset (MP2) calculations predict that the presence of the nitrogen atom in the six-membered ring has almost no effect on the barrier to inversion (587 cm(-1)) and puckering frequency (139 cm(-1)) as compared to the values previously determined (488 cm(-1) and 143 cm(-1)) for the indan molecule.     

Determination of glyoxal,methylglyoxal, and diacetyl in red ginseng products using dispersive liquid–liquid microextraction coupled with GC–MS

A simple and rapid dispersive liquid–liquid microextraction method coupled with gas chromatography and mass spectrometry was applied for the determination of glyoxal as quinoxaline, methylglyoxal as 2‐methylquinoxaline, and diacetyl as 2,3‐dimethylquinoxaline in red ginseng products. The performance of the proposed method was evaluated under optimum extraction conditions (extraction solvent: chloroform 100 μL, disperser solvent: methanol 200 μL, derivatizing agent concentration: 5 g/L, reaction time: 1 h, and no addition of salt). The limit of detection and limit of quantitation were 1.30 and 4.33 μg/L for glyoxal, 1.86 and 6.20 μg/L for methylglyoxal, and 1.45 and 4.82 μg/L for diacetyl. The intra‐ and interday relative standard deviations were <4.95 and 5.80%, respectively. The relative recoveries were 92.4–103.9% in red ginseng concentrate and 99.4–110.7% in juice samples. Red ginseng concentrates were found to contain 191–4274 μg/kg of glyoxal, 1336–4798 μg/kg of methylglyoxal, and 0–830 μg/kg of diacetyl, whereas for red ginseng juices, the respective concentrations were 72–865, 69–3613, and 6–344 μg/L.     

Theoretical anharmonic Raman and infrared spectra with vibrational assignments for monofluoroaniline isomers

The ortho-meta-, and para-fluoro substituted anilines are prototype molecules for investigation of the interactions of both the amino group and the fluorine atom with the aromatic ring. The molecular structures, natural atomic charges and theoretical anharmonic Raman and infrared spectra of the three fluoroaniline isomers have been calculated by using the density functional B3LYP method with the extended 6-311++G(df,pd) basis set. The Raman and infrared spectra of 2FA, 3FA, and 4FA have been recorded. The detailed vibrational assignments of the experimental spectra have been made on the basis of the calculated potential energy distributions, PEDs. The effect of fluorine substituent on the aniline ring geometry and charge distribution, the nature of the characteristic “marker bands” and a quenching of intensities of some bands are discussed. It is shown that the frequencies of the NH₂ stretching vibrations depend on the degree of pyramidalization of the C-NH₂ group, in the isomers. In 2FA and 3FA, the NH₂ stretching frequencies are higher than those in 4FA. This corresponds to a more flattened structure of the amino group in 2FA and 3FA, in comparison to 4FA.     

Identification of 2,3-butanedione (diacetyl) as the compound causing odor events at trace levels in the Llobregat River and Barcelona's treated water (Spain)

A study of organic compounds imparting sweet and buttery odor problems in the Llobregat River (northeast Spain) and in treated water was conducted. Solid-phase microextraction (SPME), gas chromatography-olfactometry, and flavor profile analysis (FPA) were used as analytical methodologies to identify the compound responsible for odor incidents. 2,3-Butanedione (diacetyl) with a concentration range of 0.90-26 microg/l in river water samples entering the water treatment plant was identified as the compound causing the odor events. Flavor profile analysis establishes 0.05 microg/l as its odor threshold concentration (OTC) in water, with an odor recognition concentration of 0.20 microg/l. The analyses were carried out with SPME-GC-MS and parameters affecting SPME extraction such as selection of the fiber (carboxen-polydimethylsiloxane), extraction time (30 min), temperature (60 degrees C), and ionic strength were evaluated. Quality parameters of the optimized method gives good linearity (r2 > 0.999), a limit of detection (0.08 microg/l) similar to the OTC of the compound, and good reproducibility (R.S.D. < 20%). The SPME method was applied to identify the compound causing the odor.     

Terahertz, infrared and Raman vibrational assignments of [FeFe]-hydrogenase model compounds

Using Raman, terahertz (THz), and mid-infrared (IR) spectroscopies, the vibrational spectra of two chromophore models of hydrogen-producing [FeFe]-hydrogenase, Fe₂(μ-S₂C₃H₆)(CO)₆ and Fe₂(μ-S₂C₂H₄)(CO)₆, have been assigned. The combination of absorption and scattering techniques, along with DFT calculations, allows for assignments to be made without traditional isotopic substitution methods.     

Crystallographic, vibrational and theoretical studies of 2,3-diaminopyridinium selenate

The new organic–inorganic salt, 2,3-diaminopyridinium selenate, has been synthesized and characterized by means of single-crystal X-ray crystallography, FT-IR and FT-Raman spectroscopy. A diprotonated organic ligand, H₂^1,3L²⁺, existing in the crystal structure was theoretically shown to be the most stable cationic species of 2,3-diaminopyridine. The weak non-covalent forces of N–H?O type between the hydrogen atoms of the amino and ammonio groups of 2,3-diaminopyridinium cation and oxygen atoms of tetrahedral selenate anions determine three-dimensional arrangement with complex network of intermolecular interactions of hydrogen bond type (donor–acceptor distances from 2.697(3) Å to 3.088(3) Å). Vibrational spectra have been discussed in comparison with X-ray results. Juxtaposition of spectra of the complex with the pure organic ligand and deuterated analogue of the title compound allowed to give reliable assignments of most observed vibrational bands. Presented data can be useful in elucidation of molecular mechanism of uptake of tetrahedral SeO₄²⁻ anion by the living organisms.     

Configuration-sensitive infrared bands and vibrational assignments of S-alkyldithizones based on isotopic substitutions

By comparison of the infrared spectra of S-methyl-, S-ethyl- and S-isopropyidithizones in the solid state, the configuration-sensitive i.r. bands have been obtained for the trans-syn-s-trans and trans-anti-s-trans configurations with respect to the NN, CN and CN bonds of the formazan skeleton. The vibrational assignment of S-methyldithizone has been made based on the frequency shifts on isotopic substitutions: 1,5-¹⁵N- and 2,4-¹⁵N- substitutions, deuterium substitutions of the methyl group, phenyl groups and NH group, and deuterium substitutions of both phenyl and NH groups.     

Synthesis,characterization, and crystal structure of cobalt(II) complex with 2-oximino-3-thiosemicarbazone-2,3-butanedione

The reaction of cobalt(II) chloride with the tridentate ligand 2-oximino-3-thiosemicarbazone-2,3-butanedione [Hotsb (1)] leads to the formation of the novel six-coordinated complex [Co(otsb)₂]·2H₂O (2). This complex has been synthesized and characterized by X-ray crystallography, spectroscopic and cyclic voltammetric measurements. The ligand Hotsb (1) obtained by the condensation of 2,3-butanedione monoxime and thiosemicarbazide is used for the preparation of complex 2. The Hotsb (1) crystallizes into a monoclinic lattice with space group P2₁/c. The crystal structure of 2 shows a distorted mer-octahedral geometry in which the ligands are coordinated as uninegatively charged tridentate chelating agents via the hydrazine nitrogen atoms, the azomethine nitrogen atoms, and the thiolate sulfur atoms. The cyclic voltammogram of 2 undergoes two irreversible one-electron waves corresponding to Co^II/Co^III and Co^II/Co^I processes.     

On the vibrational assignments and force constants of tetrasulphurtetraimide, (SNH)4

Infrared and Raman spectra of (S¹⁵NH)₄ and (S¹⁵ND)₄ have been recorded for the first time. The spectra are compared with those of (S¹⁴NH)₄ and (S¹⁴ND)₄ reported earlier. The observed isotopic shifts support the vibrational assignments and force constants published in 1977 by Steudel and Rose, while the alternative assignments published in 1978 by Turowski et al. and by Domingo and Orza are shown to be partly in error.     

Raman and infrared spectra, conformational stability, ab initio calculations and vibrational assignments for 2-chloroethyl silane

The infrared (3500–30 cm⁻¹) spectra of gaseous and solid and the Raman (3500–10 cm⁻¹) spectra of liquid with quantitative depolarization ratios and solid 2-chloroethyl silane, ClCH₂CH₂SiH₃, have been recorded. Similar data have been recorded for the Si–d₃ isotopomer. These data indicate that two conformers, trans and gauche, are present in the fluid states but only one conformer, trans, is present in the solid. The mid-infrared spectra of the sample dissolved in liquified xenon as a function of temperature (−55 to −100°C) has been recorded. The enthalpy difference between the conformers has been determined to be 181±12 cm⁻¹ (2.17±0.14 kJ/mol) with the trans rotamer the more stable form. From the isolated Si–H frequencies from the Si–d₂ isotopomer the r_o Si–H distances of 1.484 and 1.483 Å for the trans and 1.481 for the gauche conformers have been obtained. Ab initio calculations have been carried out with several different basis sets up to MP2/6-311+G** from which structural parameters and conformational stabilities have been determined. With all the basis sets the trans form is predicted to be the more stable conformer which is consistent with the experimental results. These results are compared to the corresponding quantities for the carbon analogue.     

Synthesis,properties, and crystal structures of mononuclear nickel(II) and copper(II) complexes with 2-oximino-3-thiosemicarbazone-2,3-butanedione

The tridentate ligand 2-Oximino-3-thiosemicarbazone-2,3-butanedione (Hotsb) reacts with MCl₂ (M = Ni²⁺ or Cu²⁺) to give rise to the mononuclear complexes [Ni(Hotsb)₂]Cl₂ · H₂O (1) and [Cu(Hotsb)Cl₂] · H₂O (2). These complexes have been characterized by X-ray crystallography, spectroscopy, and cyclic voltammetry. The nickel(II) ion in (1) is in a six-coordinate octahedral environment being bonded to the two protonated tridentate ligands which occupy mer positions. The copper(II) ion in (2) is in a five-coordinate square-pyramidal geometry, in which the basal plane is made up the two nitrogens, sulfur, and chloride atom, while the other chloride atom is coordinated at the axial position. The cyclic voltammogram of the complexes displays two one-electron waves corresponding to M^II/M^III and M^II/M^I processes. The electronic as well as infrared spectral properties of the title complexes are reported and discussed.     

Far infrared spectra, conformational equilibria, vibrational assignments, ab initio calculations and structural parameters for 2-bromoethanol

The far infrared spectrum from 370 to 50 cm⁻¹ of gaseous 2-bromoethanol, BrCH₂CH₂OH, was recorded at a resolution of 0.10 cm⁻¹. The fundamental O–H torsion of the more stable gauche (Gg′) conformer, where the capital G refers to internal rotation around the C–C bond and the lower case g to the internal rotation around the C–O bond, was observed as a series of Q-branch transitions beginning at 340 cm⁻¹. The corresponding O–H torsional modes were observed for two of the other high energy conformers, Tg (285 cm⁻¹) and Tt (234 cm⁻¹). The heavy atom asymmetric torsion (rotation around C–C bond) for the Gg′ conformer has been observed at 140 cm⁻¹. Variable temperature (−63 to −100°C) studies of the infrared spectra (4000–400 cm⁻¹) of the sample dissolved in liquid xenon have been recorded. From these data the enthalpy differences have been determined to be 411±40 cm⁻¹ (4.92±0.48 kJ/mol) for the Gg′/Tt and 315±40 cm⁻¹ (3.76±0.48 kJ/mol) for the Gg′/Tg, with the Gg′ conformer the most stable form. Additionally, the infrared spectrum of the gas, and Raman spectrum of the liquid phase are reported. The structural parameters, conformational stabilities, barriers to internal rotation and fundamental frequencies have been obtained from ab initio calculations utilizing different basis sets at the restricted Hartree–Fock or with full electron correlation by the perturbation method to second order. The theoretical results are compared to the experimental results when appropriate. Combining the ab initio calculations with the microwave rotational constants, r₀ adjusted parameters have been obtained for the three 2-haloethanols (F, Cl and Br) for the Gg′ conformers.     

Synthesis,structural studies and bio-activity of some metal(II) complexes with glyoxal salicylaldehyde acyldihydrazones

Complexes of the type [M(gssdh)]Cl and [M(gspdh)]Cl, where M?=?Co(II), Ni(II), Cu(II), Zn(II) and Cd(II), Hgssdh?=?glyoxal salicylaldehyde succinic acid dihydrazone and Hgspdh?=?glyoxal salicylaldehyde phthalic acid dihydrazone, have been synthesized and characterized by elemental analyses, molar conductance, magnetic moments, electronic, ESR and IR spectra and X-ray powder diffraction studies. The metal complexes are insoluble in common organic solvents and are 1?:?1 electrolytes. The magnetic moment values and electronic spectra indicate a spin–free octahedral geometry for all Co(II), Ni(II) and Cu(II) complexes. ESR spectral parameters of Cu(II) complexes suggest an elongated tetragonally–distorted octahedral stereochemistry around copper. Both ligands are monobasic hexadentate ligands coordinating through three >C=O, two >C=N– and a deprotonated phenolate group to the metal. X-ray powder diffraction parameters for three of the complexes correspond to an orthorhombic crystal lattice. The complexes show appreciable activity against various fungi and bacteria.     

FT-Raman and FT-IR spectra, vibrational assignments and density functional studies of 5-bromo-2-nitropyridine

The Fourier transform Raman and Fourier transform infrared spectra of 5-bromo-2-nitropyridine were recorded in the solid phase. The equilibrium geometry, natural atomic charges, harmonic vibrational frequencies, infrared intensities and Raman scattering activities were calculated by density functional B3LYP method with the 6-311++G(d,p) basis set. The scaled theoretical wavenumbers showed very good agreement with the experimental values. A detailed interpretations of the infrared and Raman spectra of 5-bromo-2-nitropyridine is reported on the basis of the calculated potential energy distribution (PED). The theoretical spectrograms for the Raman and IR spectra of the title molecule have been constructed.     

Ab initio studies on vibrational spectra of XSO_2NCO (X=F,Cl):harmonic force fields and frequency assignments

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Ab initio studies on vibrational spectra of XSO2NCO (X = F,Cl): harmonic force fields and frequency assignments

The harmonic vibrational force fields and the IR spectrum of XSO₂NCO (X= F, C1) molecules have been studied usingab initio HF/SCF method with the 6-31G’ basis set. Theab initio harmonic force fields are scaled empirically using the scaled quantum mechanical (SQM) method of Pulay. A set of scale factors are optimized by the least-squares fitting to the experimental frequencies of FSO₂NCO and then are transferred to CISO₂NCO to give ana priori prediction of its fundamental frequencies. The average deviations between the theoretical frequencies and the experimental values for FSO₂NCO and C1SO₂NCO are 3 and 5 cm^-1, respectively. The assignments of the fundamentals for these two molecules are also made atcording to the potential energy distributions and theab initio IR intensities Project supported by the National Natural Science Foundation of China (Grant No. 29673029)     

FT-Raman, FT-IR and NMR spectra, vibrational assignments and density functional studies of 1,3-bis(benzimidazol-2-yl)-2-thiapropane ligand and its Zn(II) halide complexes

1,3-bis(benzimidazol-2-yl)-2-thiapropane (L) ligand and its zinc halide ZnX₂ (X = Cl, Br, I) complexes have been synthesized. The compounds were characterized using the elemental analysis, molar conductivity, FT-Raman, FT-IR (mid i.r., far i.r.), ¹H and ¹³C NMR spectra, and quantum chemical calculations performed with Gaussian 03 package program set. The optimized geometries and vibrational frequencies of the ligand and [Zn(L)Cl₂] complex were calculated using the DFT/B3LYP method with a 6–31g(d) basis set. The geometry optimization of [Zn(L)Cl₂] yields a slightly distorted tetrahedral environment around Zn ion, while the molecule clearly reveals the Cs symmetry. The molar conductivity data reveals that the complexes are neutral. The ligand is bidentate, via two of the imine nitrogen atoms in the bis-imidazole ring units, and together with the monodentate coordination of the two halides to the metal centre.