Optical and electrochemical DNA nanobiosensors

In the past two decades, nanoscale advanced materials have been explored for biosensing molecules, so new horizons have opened up for identifying and quantifying biomolecules, and possible early diagnosis of diseases.DNA nanobiosensors show promise. This article provides an overview on their optical and electrochemical aspects. We discuss recent progress in this field, describing basic concepts of molecular beacons and quantum dots as optical nano-imaging systems. Also, carbon nanotubes provide a platform for development and advancement of electrochemical DNA nanobiosensors, which are increasingly being implemented as robust tools for detection in biomedical sciences.     

Chemical silicon surface modification and bioreceptor attachment to develop competitive integrated photonic biosensors

Methodology for the functionalization of silicon-based materials employed for the development of photonic label-free nanobiosensors is reported. The studied functionalization based on organosilane chemistry allowed the direct attachment of biomolecules in a single step, maintaining their bioavailability. Using this immobilization approach in probe microarrays, successful specific detection of bacterial DNA is achieved, reaching hybridization sensitivities of 10?pM. The utility of the immobilization approach for the functionalization of label-free nanobiosensors based on photonic crystals and ring resonators was demonstrated using bovine serum albumin (BSA)/anti-BSA as a model system.     

Fiber-optic nanosensors for single-cell monitoring

This article is an overview of the fabrication, operating principles, and applications of fiber-optic nanobiosensors with the capability of in-vivo analysis at the single-cell level. Recently, the cross-disciplinary integration of nanotechnology, biology, and photonics has been revolutionizing important areas in molecular biology, especially diagnostics and therapy at the molecular and cellular level. Fiber-optic nanobiosensors are a unique class of biosensor that enable analytical measurements in individual living cells and the probing of individual chemical species in specific locations within a cell. This article provides a review of the research performed in our laboratory and discusses the usefulness and potential of this nanotechnology-based biosensor system in biological research and its applications to biomonitoring of individual cells.     

Nanosensing at the single cell level

This article presents an overview of the development, operation, and applications of optical nanobiosensors for use in in vivo detection of biotargets in individual living cells. The nanobiosensors are equipped with immobilized bioreceptor probes (e.g., antibodies, enzyme substrate) selective to specific molecular targets. Laser excitation is transmitted into the fiber producing an evanescent field at the tip of the fiber in order to excite target molecules bound to the bioreceptors immobilized at the fiber tips. A photometric system detects the optical signal (e.g., fluorescence) originated from the analyte molecules or from the analyte–bioreceptor reaction. Examples of detection of biospecies and molecular signaling pathways of apoptosis in a living cell are discussed to illustrate the potential of the nanobiosensor technology for single cell analysis.     

Electrochemical properties of polymeric nanopatterned electrodes

An investigation of the electrochemical behaviour of gold electrodes coated with poly(ethylene glycol) (PEG), poly(acrylic acid) (PAA) and nanopatterned PAA/PEG layers is presented. Plasma-enhanced chemical vapour deposition and colloidal lithography were used to produce nanodomes of PAA in a matrix of PEG. The electrochemical response at these nanostructured electrodes was studied as a function of the probe ion charge. Results show that the film structures allow the electrodes to retain their electrochemical activity while minimising surface fouling and will thus be useful in the development of electrochemical nanobiosensors for various applications.     

Synergistically Enhanced Dispersion of Native Protein–Carbon Nanotube Conjugates by Fluoroalcohols in Aqueous Solution

Carbon nanotubes (CNTs) are anticipated as an important new material for use in nanotechnology applications because of their excellent mechanical and electrical properties. For their development, a highly stable dispersion of debundled CNTs is indispensable. Herein we present a new method to enhance dispersibility of single‐walled carbon nanotubes (SWNTs) with proteins using alcohols as co‐solvents. Addition of fluoroalcohols in solution increased the SWNT dispersion by more than one order of magnitude without protein denaturation. Enhancement of SWNT dispersion through addition of alcohols was attributed to the decreased hydrophobic interaction among SWNTs. This novel approach enables us to produce biofunctional CNTs such as one‐dimensional nanobiosensors and drug carriers that can penetrate cells.     

Long-term storage of surface-adsorbed protein machines

The effective and simple long-term storage of complex functional proteins is critical in achieving commercially viable biosensors. This issue is particularly challenging in recently proposed types of nanobiosensors, where molecular-motor-driven transportation substitutes microfluidics and forms the basis for novel detection schemes. Importantly, therefore, we here describe that delicate heavy meromyosin (HMM)-based nanodevices (HMM motor fragments adsorbed to silanized surfaces and actin bound to HMM) fully maintain their function when stored at -20 °C for more than a month. The mechanisms for the excellent preservation of acto-HMM motor function upon repeated freeze-thaw cycles are discussed. The results are important to the future commercial implementation of motor-based nanodevices and are of more general value to the long-term storage of any protein-based bionanodevice.     

Carbon Nanotubes-Based Label-Free Affinity Sensors for Environmental Monitoring

Nanostructures, such as nanowires, nanobelts, nanosprings, and nanotubes, are receiving growing interest as transducer elements of bio/chemical sensors as they provide high sensitivity, multiplexing, small size, and portability. Single-walled carbon nanotubes (SWNTs) are one such class of nanostructure materials that exhibit superior sensing behavior due to its large-surface carbon atoms that are highly responsive to surface adsorption events. Further, their compatibility with modern microfabrication technologies and facile functionalization with molecular recognition elements make them promising candidates for bio/chemical sensors applications. Here, we review recent results on nanosensors based on SWNTs modified with biological receptors such as aptamers, antibodies, and binding proteins, to develop highly sensitive, selective, rapid, and cost-effective label-free chemiresistor/field-effect transistor nanobiosensors for applications in environmental monitoring.     

Self-assembled nanoparticle probes for recognition and detection of biomolecules

Colloidal gold nanocrystals have been used to develop a new class of nanobiosensors that is able to recognize and detect specific DNA sequences and single-base mutations in a homogeneous format. At the core of this biosensor is a 2.5-nm gold nanoparticle that functions as both a nano-scaffold and a nano-quencher (efficient energy acceptor). Attached to this core are oligonucleotide molecules labeled with a thiol group at one end and a fluorophore at the other. This hybrid bio/inorganic construct is found to spontaneously assemble into a constrained arch-like conformation on the particle surface. Binding of target molecules results in a conformational change, which restores the fluorescence of the quenched fluorophore. Unlike conventional molecular beacons with a stem-and-loop structure, the nanoparticle probes do not require a stem, and their background fluorescence increases little with temperature. In comparison with the organic quencher Dabcyl (4,4'-dimethylaminophenyl azo benzoic acid), metal nanoparticles have unique structural and optical properties for new applications in biosensing and molecular engineering.     

单金纳米棒的光散射分析化学:径向比与分析灵敏度的关系

单纳米颗粒作为信号感应单元在化学与生物传感应用中已引起广泛关注.本文通过暗场显微成像(iDFM)研究了不同径向比金纳米棒的光散射性质.将iDFM与扫描电子显微镜(SEM)结合表征种子生长法制备的金纳米棒,结果发现,因局域表面等离子体共振而展示出的红色散射光随单个金纳米棒的径向比增大逐渐红移,且金纳米棒对其周围介质折光率(RI)变化的敏感程度随径向比增大而增大.这一结果对设计高灵敏的生物纳米传感器、提高分析检测的灵敏度具有很好的指导意义.     

胆碱氧化酶功能化室温磷光量子点的制备及其对氯化胆碱的定量检测

环境友好型纳米生物传感器能够提高传统生物分子传感器的检测性能，在实际应用中具有重要的应用价值。本研究以胆碱氧化酶（ChOx）为模板，在室温（25 ℃）下通过矿化作用制备了一种ChOx功能化的室温磷光（RTP）量子点（QDs）（ChOx RTP QDs）纳米生物传感器，并利用ChOx与氯化胆碱的特异性酶-底物反应和光诱导的电子转移（PIET）实现了对氯化胆碱（Cho）的RTP定量检测。该纳米生物传感器对氯化胆碱检测的线性范围为0.05~20 mmol/L，检出限为0.02 mmol/L。该方法基于QDs的RTP性质，可以有效地避免生物样品背景荧光的干扰，且无需复杂的样品前处理过程，因此该方法较适合于生物样品中氯化胆碱的定量检测。     

Extracellular Surface Potential Mapping by Scanning Ion Conductance Microscopy Revealed Transient Transmembrane Pore Formation Induced by Conjugated Polymer Nanoparticles

In‐depth understanding of the biophysicochemical interactions at the nano–bio interface is important for basic cell biology and applications in nanomedicine and nanobiosensors. Here, the extracellular surface potential and topography changes of live cell membranes interacting with polymeric nanomaterials using a scanning ion conductance microscopy‐based potential imaging technique are investigated. Two structurally similar amphiphilic conjugated polymer nanoparticles (CPNs) containing different functional groups (i.e., primary amine versus guanidine) are used to study incubation time and functional group‐dependent extracellular surface potential and topographic changes. Transmembrane pores, which induce significant changes in potential, only appear transiently in the live cell membranes during the initial interactions. The cells are able to self‐repair the damaged membrane and become resilient to prolonged CPN exposure. This study provides an important observation on how the cells interact with and respond to extracellular polymeric nanomaterials at the early stage. This study also demonstrates that extracellular surface potential imaging can provide a new insight to help understand the complicated interactions at the nano–bio interface and the following cellular responses.     

Preparation of Luminol-doped Nanoparticle and Its Application in DNA Hybridization Analysis

Introduction The analysis of DNA sequence and DNA mutant detection play fundamental roles in the rapid development of molecular diagnostics and in the anticancer drug screening. Therefor many detection techniques of DNA sequence have been developed in recent years. These techniques mainly depend on the nucleic acid hybridization1 and their sensitivities are related to the specific activity of the label linked to the DNA probe. The degree of hybridization of probe to its complementary DN…     

A theoretical study on the pure and doped ZnO nanoclusters as effective nanobiosensors for 5-fluorouracil anticancer drug adsorption

The electronic sensitivity and effectiveness of the pristine, Fe,- Mg-, Al- and Ga-doped ZnO nanoclusters interacted with 5-fluorouracil (5-FU) anticancer drug are theoretically investigated in the gas phase using the B3LYP/wB97XD density functional theory calculations with LANL2DZ basis set. It is concluded that 5-FU adsorption on the doped nanoclusters has relatively higher adsorption energy as compared with the pristine zinc oxide. A number of thermodynamic parameters, such as band gap energy (E_g), adsorption energy (E_ad), molecular electrostatic potential, global hardness (η) and density of electronic states, are attained and compared. Also, calculated geometrical parameters and electronic properties for the studied systems indicate that Mg- and Ga-doped Zn₁₂O₁₂ present higher sensitivity to 5-FU compared with the pristine nanocluster. Theoretical results reveal that adsorption of 5-FU on the doped nanoclusters is influenced by the electronic conductance of the nanocluster. Therefore, Mg- and Ga-doped ZnO can be considered as promising nanobiosensors for detection of 5-FU in medicine.     

Amperometric Detection and Quantification of Nitrate Ions Using a Highly Sensitive Nanostructured Membrane Electrocodeposited Biosensor Array

In the past few decades, there has been a steady rise in the release of nitrate (NO₃^?), a prominent water soluble contaminant associated with the increasing use of nitrate based fertilizers. In this study, we suggest the use of a highly sensitive, enzymatic biosensor capable of quantifying minute concentrations of nitrate. The disposable nitrate biosensor consists of a sensing element in the form of nitrate reductase which is immobilized within a conductive polymer matrix to generate a quantifiable amperometric response. In this work, nanoarrays of co‐immobilized nitrate reductase and poly(3,4‐ethylenedioxythiophene) (PEDOT), were grown using a template assisted electropolymerization route. The performance of the biosensor is a strong function of electropolymerization conditions and the morphology of the PEDOT nanostructures. The electropolymerized biosensor displays excellent specificity w.r.t other interfering ions as evidenced from the initial rate kinetics. With a response time of a few seconds, limit of detection (LOD) as low as 0.16 ppm and sensitivity of about 92 µA/mM , the one‐step electropolymerized nanostructured nitrate biosensor developed in this study shows improved performance compared to similar electrochemical sensors reported in literature. The PEDOT/nitrate reductase nanowire sensor developed in this work shows superior attributes compared to a flat 2D nitrate reductase‐co‐immobilized PEDOT film grown using similar electropolymerization conditions. This combined with easy and fast fabrication technique opens up exciting opportunities for developing high accuracy PEDOT based nanobiosensors for field testing of nitrate contaminants in the future.     

Controlled Array of Ferritin in Tubular Nanostructure

We have demonstrated that uniform and continuous poly(2‐acrylamido‐2‐methyl‐1‐propane sulfonic acid) (PAMPS) tubular core‐shell nanostructures containing linear features of ferritin nanoparticles can be directly fabricated using two immiscible solutions employing coaxial electrospinning. By adjusting the concentration of PAMPS as the outer solution in the coaxial electrospinning process, the width of a one dimensional (1D) array of ferritin could be accurately controlled. We demonstrate the formation of a nearly linear chain of individual ferritin particles encapsulated in a PAMPS nanofiber of 40 nm diameter. The ability to accurately control the width of the ferritin 1D arrays encapsulated in tubular nanostructures is a key component in determining the efficiency and performance of nanodevices. The demonstrated method of forming tubular nanostructures containing inner 1D particle arrays can also be extended to other materials with potential applications in nanoelectronic devices, such as nanobiosensors and batteries.

     

A nanoscale optical biosensor: sensitivity and selectivity of an approach based on the localized surface plasmon resonance spectroscopy of triangular silver nanoparticles

Triangular silver nanoparticles ( approximately 100 nm wide and 50 nm high) have remarkable optical properties. In particular, the peak extinction wavelength, lambda(max) of their localized surface plasmon resonance (LSPR) spectrum is unexpectedly sensitive to nanoparticle size, shape, and local ( approximately 10-30 nm) external dielectric environment. This sensitivity of the LSPR lambda(max) to the nanoenvironment has allowed us to develop a new class of nanoscale affinity biosensors. The essential characteristics and operational principles of these LSPR nanobiosensors will be illustrated using the well-studied biotin-streptavidin system. Exposure of biotin-functionalized Ag nanotriangles to 100 nM streptavidin (SA) caused a 27.0 nm red-shift in the LSPR lambda(max). The LSPR lambda(max) shift, DeltaR/DeltaR(max), versus [SA] response curve was measured over the concentration range 10(-)(15) M < [SA] < 10(-)(6) M. Comparison of the data with the theoretical normalized response expected for 1:1 binding of a ligand to a multivalent receptor with different sites but invariant affinities yielded approximate values for the saturation response, DeltaR(max) = 26.5 nm, and the surface-confined thermodynamic binding constant K(a,surf) = 10(11) M(-)(1). At present, the limit of detection (LOD) for the LSPR nanobiosensor is found to be in the low-picomolar to high-femtomolar region. A strategy to amplify the response of the LSPR nanobiosensor using biotinylated Au colloids and thereby further improve the LOD is demonstrated. Several control experiments were performed to define the LSPR nanobiosensor's response to nonspecific binding as well as to demonstrate its response to the specific binding of another protein. These include the following: (1) electrostatic binding of SA to a nonbiotinylated surface, (2) nonspecific interactions of prebiotinylated SA to a biotinylated surface, (3) nonspecific interactions of bovine serum albumin to a biotinylated surface, and (4) specific binding of anti-biotin to a biotinylated surface. The LSPR nanobiosensor provides a pathway to ultrasensitive biodetection experiments with extremely simple, small, light, robust, low-cost instrumentation that will greatly facilitate field-portable environmental or point-of-service medical diagnostic applications.     

Models to estimate overall analytical measurements uncertainty: assumptions, comparisons and applications

Evaluation of analytical results reliability is of core importance as crucial decisions are taken with them. From the various methodologies to evaluate the fitness of purpose of analytical methods, overall measurement uncertainty estimation is more and more applied. Overall measurement uncertainty allows to combine simultaneously the remaining systematic influences to the random sources of uncertainty and allows assessing the reliability of results generated by analytical methods. However there are various interpretations on how to estimate overall measurement uncertainty, and thus various models for estimating it. Each model together with its assumptions has great impacts on the risks to abusively declare that analytical methods are suitable for their intended purpose. This review paper aims at (i) summarizing the various models used to estimate overall measurement uncertainty, (ii) provide their pros and cons, (iii) review the main areas of application and (iv) as a conclusion provide some recommendations when evaluating overall measurement uncertainty.     

Laboratory measurement of human cytokines.

Cytokines mediate and modulate different physiological systems. Accurate and sensitive methods for their measurement are being developed using bioassays, immunoassays, measurement of their mRNA, receptor binding assays, and immunochemical procedures. The most clinically significant cytokines and their assay methods are briefly reviewed. The need for standardization of assays is stressed.