Quantum Chemical Investigations on the Structures,Stabilities and Decompositions of Trinitrobenzenes and Their Chloro Derivatives

ＩｎｔｒｏｄｕｃｔｉｏｎＴｒｉｎｉｔｒｏｂｅｎｚｅｎｅｓ（ＴＮＢｓ）ｈａｖｅｂｅｅｎｔｈｅｆｏｃｕｓｏｆａｎｕｍｂｅｒｏｆｉｎｖｅｓｔｉｇａｔｉｏｎｓｆｏｒａｌｏｎｇｔｉｍｅ．Ｍａｎｙｏｆｔｈｅｉｒｄｅｒｉｖａｔｉｖｅｓ，ｆｏｒｅｘａｍｐｌｅｍｅｔｈ...     

Quantum chemical studies on the structures, properties and decomposition of the azido derivatives of trinitrobenzenes

The geometries,heats of formation and electronic structures of 15 azido-derivatives of 1,2,3-TNB (Ⅰ),1,2,4-TNB (Ⅱ) and 1,3,5-TNB (Ⅲ) have been studied using quantum chemical AMI method at HF level.The effect of azido substitution on the structures and properties of TNBs has been discussed and the relative stability of the title compounds has been established.The processes of the decomposition of the title compounds by breaking C-NO2,C-N3 and CN-N2 bonds are investigated at UHF-AM1 level.It is shown that the decomposition of the title compounds may be initiated by the cleavage of both C-NO2 and N-N2 bonds.     

Comparative molecular field analysis of artemisinin derivatives: Ab initio versus semiempirical optimized structures

Based on the belief that structural optimization methods, producing structures more closely to the experimental ones, should give better, i.e. more relevant, steric fields and hence more predictive CoMFA models, comparative molecular field analyses of artemisinin derivatives were performed based on semiempirical AM1 and HF/3-21G optimized geometries. Using these optimized geometries, the CoMFA results derived from the HF/3-21G method are found to be usually but not drastically better than those from AM1. Additional calculations were performed to investigate the electrostatic field difference using the Gasteiger and Marsili charges, the electrostatic potential fit charges at the AM1 level, and the natural population analysis charges at the HF/3-21G level of theory. For the HF/3-21G optimized structures no difference in predictability was observed, whereas for AM1 optimized structures such differences were found. Interestingly, if ionic compounds are omitted, differences between the various HF/3-21G optimized structure models using these electrostatic fields were found.     

Synthesis and structural study of carbocyclic analogues of 1,2-disubstituted nucleosides

The compounds (±)-cis- and (±)-trans-9-[(2-hydroxymethyl) cyclopentyl]guanine (1 and 2 respectively) were efficiently synthesized by the construction of the purine base on the primary amino group of cis- and trans-2-aminocyclopentylmethanol. The 3D structures of these two 1,2-disubstituted carbanucleosides in DMSO were determined using molecular dynamics calculations with experimental NMR restraints on the basis of the information obtained from a ROESY spectrum. These structures were compared with those obtained in vacuo using molecular dynamics and AM1 semiempirical calculations. The global structures of the two compounds are very similar in the two environments studied, meaning that the structural determination in the gas phase can be extrapolated to molecular simulation studies in solution for compounds of this type.     

Design,synthesis and biological activity of novel substituted pyrazole amide derivatives targeting Ec R/USP receptor

In order to discover highly active ecdysone analogs, a series of new substituted pyrazole amide derivatives were obtained using structure-guided optimization method and further screened for their insecticidal activities, in the basis of the core structures of the two active compounds N-(3-methoxyphenyl)-3-(tert-butyl)-1-phenyl-1H-pyrazole-5-carboxamide(6e) and N-(4-(tert-butyl)phenyl)-3-(tert-butyl)-1-phenyl-1H-pyrazole-5-carboxamide(6i), previously presented by us. The chemical structures of the title compounds were identified by spectral analyses. The preliminary bioassay results indicated that one among the synthesized pyrazole derivatives, compound 34, endowed with good activity against Mythimna Separata at 10 mg/L, which was equal to that displayed by the positive control tebufenozide. In addition, examples of molecular docking and molecular dynamics studies demonstrated that 34 may be the potential inhibitor to Ec R and its docking conformation was similar to that of tebufenozide. In addition, increasing the hydrophobic effect and considering the suitable bulk effect on pyrazole ring are beneficial to the inhibiting activity to Ec R and activity in vivo.     

翡翠绿[60]富勒烯衍生物强近红外吸收的理论研究

采用AM1的方法优化了翡翠绿[60]富勒烯C60[C(CH3)(CO2-t-Bu)2]6的结构.利用CI-ZINDO方法计算了基于晶体结构参数和优化结构的化合物及其衍生物的吸收光谱.计算结果与实验值吻合得很好.     

Molecular volume calculation using AM1 semi-empirical method toward diffusion coefficients and electrophoretic mobility estimates in aqueous solution

Diffusion coefficients and electrophoretic mobility are two important physicochemical parameters used in mass transport phenomenon studies. The volume of the solute is required to determine or estimate these parameters. Classical methods, such as the LeBas method are commonly used. However, although valid, this method may represent a boring and time-consuming task, depending on the nature and number of compounds to be calculated. In this study, the volumes of a series of neutral and charged substances of the main functional groups present in organic molecules, amino acids, drugs and diverse compounds, such as cytosine and glucose, were calculated according to the LeBas method (V_M) and the AM1 semi-empirical method, V_W(AM1). The latter showed to be statistically coincident with the former. Employed as a pure value or corrected by the LeBas molar volume, the AM1 molecular volume was also demonstrated to estimate the diffusion coefficients in infinite aqueous dilution within an acceptable average error, according to the Othmer–Thakar, Wilke–Chang and Hayduk–Laudie methods, as well as the electrophoretic mobility of charged substances, such as carboxylates and protonated amines. According to these results, the AM1 method was seen to be statistically valid to calculate molecular volume. Many advantages in the construction of most diverse structures were noted, as well as a reduction in time and an increase in the quality of the information, when run on molecular modeling software.     

Structural study of pyrimidine nucleoside analogues. I: Molecular mechanics and semiempirical calculations of 2′-deoxy-2′-fluoroarabinofuranosyluracils

Molecular mechanics (MM) calculations have been performed on the title compounds. For the MM minimum energy conformation obtained by conformational analysis, molecular orbital (MO) calculations (MNDO and AM1) have also been performed. The geometries obtained have been compared with the experimental ones extracted from the Cambridge Structural Database (CSD). A qualitative structure-activity relationship has been pointed out based on the electrostatic potentials calculated at different positions on the electronic surface.     

Substituent effects on heats of formation, group interactions, and detonation properties of polyazidocubanes

We have calculated the heats of formation (HOFs) for a series of polyazidocubanes by using the density functional theory (DFT), Hartree-Fock, and MP2 methods with 6-31G* basis set as well as semiempirical methods. The cubane skeleton was chosen for a reference compound, that is, the cubane skeleton was not broken in the process of designing isodesmic reactions. There exists group additivity for the HOF with respect to the azido group. The semiempirical AM1 method also produced reliable results for the HOFs of the title compounds, but the semiempirical MINDO3 did not. The relationship between HOFs and molecular structures was discussed. It was found that the HOF increases 330-360 kJ/mol for each additional number of the azido group being added to the cubane skeleton. The distance between azido groups slightly influences the values of HOFs. The interacting energies of neighbor azido groups in polyazidocubanes are in the range of 2.3 approximately 6.6 kJ/mol, which are so small and less related to the substituent numbers. The average interaction energy between nearest neighbor --N3 groups in the most stable conformer of octaazidocubane is 2.29 kJ/mol at the B3LYP/6-31G* level. The relative stability related to the number of azido groups of the title compounds was assessed based on the calculated HOFs, the energy gaps between the frontier orbitals, and the bond orders of the C--N3 and C--C bonds. The predicted detonation velocity of hepta- and octa-derivatives is over 9 km/s, and the detonation pressure of them is ca. 40 GPa or over.     

含氧有机物脂水分配系数与结构参数的关系

应用半经验量子化学AM1方法得到了108种含氧有机分子的优势构象,利用AM1方法和分子图形学技术获得了它们的电子结构和几何结构参数,并将这些参数与脂水分配系数相关联,采用逐步回归分析方法,成功地建立了拟合度高、物理意义明确、预测能力强的含氧有机分子脂水分配系数-结构参数定量关系方程,找出了影响含氧有机分子脂水分配系数的主要结构因素.     

取代基对依布硒啉电子结构及光谱性质影响的理论研究

采用密度泛函理论B3LYP方法在6-311++G**水平对依布硒啉及其6个衍生物进行结构优化,并分析了取代基对分子几何构型、电荷分布、前线轨道能级分布的影响.在相同计算水平上采用含时密度泛函理论方法进行了电子光谱研究,讨论了取代基对电子光谱的影响.计算结果表明,标题化合物分子为非平面结构,苯并异硒唑酮环与苯环之间存在一...     

（E）-1-[4-（2-hydroxy-5-methoxybenzylideneamino）-phenyl]ethanone and （E）-1-[4-（2-hydroxy-4-methoxybenzylideneamino） phenyl]ethanone：X-ray and DFT-calculated structures

The isomeric structures of(E)-1-[4-(2-hydroxy-5-methoxybenzylideneamino)-phenyl] ethanone(I) and(E)-1-[4-(2-hydroxy-4-methoxybenzylideneamino) phenyl]ethanone(Ⅱ) ,both C16H15NO3,have been determined using X-ray diffraction techniques and characterized by IR,and their molecular structures have also been optimized at the B3LYP/6-31G(d,p) level using density functional theory(DFT) . The energetic behaviors of the title compounds in solvent media have been examined using B3LYP method with the 6-31G(d,p) basis set by applying the polarizable continuum model(PCM) . The total energies of the title compounds decrease with the increasing polarity of the solvent. In addition,DFT calculations of the title compounds' molecular electrostatic potentials(MEP) were performed at the B3LYP/6-31G(d,p) level of theory. X-ray study shows that the title compounds both have strong intramolecular O-H…N hydrogen bonds. The molecules of Ⅰ are linked into a one-dimensional framework structure by C-H…π interactions,while in Ⅱ,intermolecular π···π interactions result in the formation of infinite chains running along the [010].     

Derivate von Tricyanmethan 1. Darstellung,Charakterisierung und Zersetzung von Chlor- und Bromtricyanmethan

Derivatives of Tricyanomethane 1. Synthesis, Characterization, and Decomposition of Chloro- and Bromotricyanomethane The title compounds X? C(CN)₃, where X is Cl and Br, are characterized by means of electron absorption, nuclear magnetic resonance, vibrational, and mass spectra. The decompositions of the two compounds in solution have been studied kinetically at 5,0 ± 0,2 °C.     

α-芋螺毒素构效关系与分子设计

α-芋螺毒素(α-conotoxins)是从芋螺毒液中提取到的一类活性多肽. 与其它家族的芋螺毒素相比, 它们含二硫键少, 结构相对简单, 由于作用于神经肌肉接头的N-乙酰胆碱受体(nAChRs)的不同亚型, 拮抗乙酰胆碱, 可作为鉴定nAChRs亚型及其亚基的有效工具, 已成为芋螺毒素结构改造的最佳先导化合物. 利用HyperChem软件包的量子化学半经验方法AM1对8个具有代表性的α-芋螺毒素进行了量子化学计算, 研究了它们的电子结构及构效关系. 结果表明, 空间结构的相似性使它们作用于同一受体, 局部结构差异而导致的电子结构的较大差别是它们能作用于不同受体亚型的重要原因. 在此基础上, 以α-芋螺毒素GI为模型设计了7个类似物并进行了量子化学计算, 比较了类似物与GI在空间结构及电子结构方面的特征.     

2D-QSAR Studies on Triazolone Compounds Containing Benzenesulfonic Amide

The geometry structures of 6 triazolone compounds containing benzenesulfonic amide were fully optimized with DFT (Density Functional Theory) method at the B3LYP/6-31G level, and the structural and electronic parameters of the compounds were calculated. The hydrophobic and topological parameters of the title compounds were calculated by HyperChem software. The mono-and bi-parametric models between the parameters and biological activity of the compounds were analyzed by Multiple Linear Regression method based on Hansch-Fujita model. The results show that the activities of the title compounds were increased with higher hydrophobic property logP and molecular volume V, lower molecular energy ETOTAL and elec-tronegative of benzene ring Qph.     

蒽醌衍生物在不同酸度溶液中的吸收光谱

蒽醌类化合物是一类古老的染料,对光和热非常稳定.某些蒽醌化合物还具有稳定的非晶态和晶态结构,在一定条件下可以进行相互转换,这种材料对强光具有非线性,有潜在的应用背景^[1].为此我们设计合成了两种新的蒽醌类化合物,测试了它们在溶液中的吸收光谱,研究了溶液酸碱性对吸收光谱的影响.     

3-取代-1-(5-芳基-1,3,4-噻二唑-2-基)-1H-吡唑-4-甲醛的合成、晶体结构及抑菌活性

以2-氨基-5-取代-1,3,4-噻二唑为起始原料,设计合成16个含1,3,4-噻二唑取代基的中间体4a~4p,进而使其在POCl₃及DMF作用下反应得到16个3-取代-1-(5-芳基-1,3,4-噻二唑-2-基)-1H-吡唑-4-甲醛化合物5a~5p,所合成的32个化合物均为新化合物。 采用溶液结晶法获得化合物5a晶体,通过X射线单晶衍射测得该晶体属于三斜晶系,P-1空间群。 借助 IR、¹H NMR、元素分析等技术手段对合成的所有化合物结构进行了表征。 利用微量稀释法测试了化合物5a~5p的抑菌活性,结果表明,部分化合物对金黄色葡萄球菌具有抑制作用,在相同条件下化合物5h的抑菌活性最好,抑菌率达到65.30%。     

伯硝胺酸催化分解动力学的理论研究

用SCF-MO AM1方法全优化计算了伯硝胺化合物(RNHNO~2, R=Me, Et, Pr^i,Bu^t和CH~2CO~2H)的几何构型和电子结构, 并求得15个反应的过渡态和活化能 . 分析静态结构和动力学特征, 发现取代基(R)供电性愈强, 标题物的酸催化分解速率愈大, 即相对速率为R=Bu^t＞Pr^i＞Et＞Me＞CH~2CO~2H; 溶剂化效应将降低标题物质子化过程的活化能, 有利于加速酸催化分解。     

Theoretical Study of Heterocyclic Nitro Compounds for Use as Novel Explosives and Propellants

The heats of formation (HOFs) of heterocyclic nitro compounds were obtained by using a density functional theory B3LYP method with 6‐31G* and 6‐311+G** basis sets. The isodesmic reactions designed for the evaluation of HOFs keep most of the basic ring structures of the title compounds and thus ensure the credibility of the results. The values of HOFs are 567.90, 874.29 and 975.83 kJ/mol at the B3LYP/6‐31G* level for hexanitrohexazaadamantane ( A ), nonanitrononaza‐tetracyclo[7.3.1.1^3,7.1^5,11] pentadecane ( B ) and tetranitrotetrazacubane ( C ) respectively. The predicted detonation velocities of the title compounds are larger than, and detonation pressures are much larger than that of the widely used 1,3,5,7‐tetranitro‐1,3,5,7‐tetraazacyclooctane (HMX). The dissociation energy for the weakest C‐N bonds in the cage skeleton of the title compounds are 137‐144 kJ/mol at the B3LYP/6‐31G* level.     

Synthesis and Quantum-chemistry Analysis on Novel Triazole Compounds Containing Ester Group

Nine novel triazole compounds containing ester group were designed and synthesized. Their structures were confirmed by elemental, ^1H NMR and IR analyses, and optimized by means of DFF （Density Functional Theory） method at the B3LYP/6-31G＊ level. Based on the quantum-chemical calculation results and the Pearson coefficients between FA and quantum- chemical parameters, V, LogP, MR and EHOMO are shown to be the important relative factors which affect FA of the title compounds.