Phospho-proteomic analysis of cellular signaling

Reversible protein phosphorylation plays an important role in the regulation of many different processes, such as cell growth, differentiation, migration, metabolism, and apoptosis. Identification of differentially phosphorylated proteins by means of phospho-proteomic analysis provides insight into signal transduction pathways that are activated in response to, for example, growth factor stimulation or toxicant-induced apoptosis. This review summarizes recent advances made in the field of phospho-proteomics and provides examples of how phospho-proteomic techniques can be combined to quantitatively investigate the dynamic changes in protein phosphorylation in time. By linking experimental data to clinical data (e.g., disease progression or response to therapy) new disease markers could be identified, which could then be validated for applications in disease diagnosis and progression or prediction of a response to drugs.     

The effect of cellular energetics on foreign protein production

Escherichia coli strain F-122 was used to determine if there are additional physiological effects, other than decreasing energetic efficiency accompanied by the excretion of the acetate, on foreign protein production. This organism was the host for expressing HIV₅₈₂-β-galactosidase fusion protein under the control of thetrp promoter, with ampicillin resistance. By comparing parallel batch cultures with and without acetate addition, it was found that the presence of acetate in the media did not influence β-galactosidase activity. In these experiments, it appears that the low protein productivity often observed during acetate formation is the result of inefficient cell metabolism, rather than acetate acting as a specific inhibitor of protein production.     

Neighboring effect of the sodium carboxylate group on the saponification of diallyl phthalate prepolymer

The neighboring effect of sodium carboxylate groups on the saponification of diallyl phthalate prepolymer was investigated in detail in dioxane solutions that contained various amounts of water at 50°C by using different types of model compound; this procedure is also compared with the neighboring effect of hydroxyl groups.     

Formation of diallyl disulfide from diallyl sulfide in the H2S-DMSO system

Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 7, pp. 1708–1709, July, 1991.     

The effect of irregularity on the dielectric dispersion characteristics of spherical cellular suspension

The dielectric dispersion characteristics of cellular suspensions are fundamentally determined based on the analogy to composite dielectric materials when periodically and discrete arrangement of cells is assumed. However, under native physiological conditions, when flocculation and clamping events usually occur, those assumptions are usually not valid. In the framework of this study, an examination of irregularity effect on the dispersion characteristics of spherical cellular suspensions is presented. Here, the permittivity spectra of the suspensions have been determined by both measurements of living K562 cell suspensions and finite numerical simulations. Based on the measured and simulated spectra, the dispersion characteristics of the suspensions, for several destinies and arrangements of cells, have been quantitatively analyzed using the Havriliak–Negami empirical formula. Generally, a strong correlation between the low dispersion characteristics was observed as the concentration and density of the cells was increased. In addition, all characteristics found to be significantly deviated in comparison to the characteristics of a periodically arrayed suspension. However, when low-dense arrangement was assumed, the correlation found to be much lower when all characteristics found to be less perturbated. Based on a simple model of interacting cells, it is suggested that those deviations are related to intercellular interactions between adjacent cells.     

Investigating cellular signaling reactions in single attoliter vesicles

Understanding cellular signaling mediated by cell surface receptors is key to modern biomedical research and drug development. The discovery of a growing number of potential molecular targets and therapeutic compounds requires downscaling and accelerated functional screening. Receptor-mediated cellular responses are typically investigated on single cells or cell populations. Here, we show how to monitor cellular signaling reactions at a yet unreached miniaturization level. On the basis of our observations, cytochalasin induces mammalian cells to extrude from their plasma membrane submicrometer-sized native vesicles. They comprise functional cell surface receptors correctly exposing their extracellular ligand binding sites on the outer vesicle surface and retaining cytosolic proteins in the vesicle interior. As a prototypical example, ligand binding to the ionotropic 5-HT(3) receptor and subsequent transmembrane Ca(2+) signaling were monitored in single attoliter vesicles. Thus, native vesicles are the smallest autonomous containers capable of performing cellular signaling reactions under physiological conditions. Because a single cell delivers about 50 native vesicles, which can be isolated and addressed as individuals, our concept allows multiple functional analyses of individual cells having a limited availability and opens new vistas for miniaturized bioanalytics.     

Catalytic hydrogenation of diallyl fumarate

The catalytic hydrogenation of diallyl fumarate in cyclohexane and methanol at 20 °C and atmospheric pressure of hydrogen by means of palladium, platinum and rhodium catalysts was investigated. The system modelled parallel-consecutive reactions in which the effect of the type of the active metal and solvent on the reaction path was assessed.

---

20 °C Pd, Pt Rh. .

     

Studies of the polymerization of diallyl compounds. XXIV. Effect of temperature on the polymerization of diallyl phthalate

The effect of temperature on the polymerization of diallyl phthalate was investigated in the temperature range of 80–150°C. The degree of polymerization increased slightly with temperature up to 100°C and then decreased; together with the results of primary chain length and the dependence of R_p on initiator concentration, these findings were interpreted in terms of the enhancement of the reinitiation ability of the allylic radical produced by the intramolecular chain-transfer reaction and of the reactivity of the cyclized radical at elevated temperature. The tendency for cyclization became more marked with increasing temperature. The gel point was almost unaffected.     

Polymerization of diallyl phthalate and gelation of poly(diallyl phthalate) by copolymerization with styrene

In the polymerization of diallyl phthalate in bulk at 60°C with azobisisobutyronitrile, extensive branching of the polymers obtained before gelation was ascertained from the enhanced broadening of the molecular weight distribution, coupled with the decrease of the residual unsaturation. Copolymerization of poly(diallyl phthalate) and styrene in bulk at 80°C with benzoyl peroxide was studied in detail with regard to the gel formation. The gel time increased with increasing fraction of styrene in feed. Both the gel yield and the conversion of styrene incorporated into the gel increased steadily with polymerization time, even after the total conversion of styrene exceeded 95%. The polystyrene recovered by saponification of the gel was found to carry hydroxyl groups, which should come from the copolymerized diallyl phthalate units. It was concluded that styrene behaved as a diluent in the early stage, and that the crosslinking after gelation of the system proceeded mainly through polymer–polymer reactions involving the occluded polystyryl radicals and poly(diallyl phthalate).     

Hydrosilylation of diallyl sulfide with trichlorosilane

Conclusions By the hydrosilylation of diallyl sulfide with trichlorosilane, catalyzed by the Nt(acac)₂-tert-phosphine systems, mono- and bis-trichlorosilyl derivatives were obtained. Conditions were found for the preferential preparation of each of these compounds. Besides mono- and bis-adducts, 1-trichlorosilyl-4-thioheptane is also formed.Translated from Izvestiya Akademii Nauk SSSR, Seriya Khimicheskaya, No. 9, pp. 2119–2121, September, 1981.     

Studies of the polymerization of diallyl compounds. XXXVII. Copolymerizations of diallyl phthalate with dialkyl fumarates

Diallyl phthalate (DAP) was copolymerized with dialkyl fumarates, including diethyl fumarate (DEF), di-n-butyl fumarate (DBF), and di-n-octyl fumarate (DOF) by using 2,2′-azobisisobutyronitrile as an initiator at 60°C. Both rate and degree of copolymerization were quite enhanced compared with the homopolymerization of DAP and the maximum rate was found at the molar ratio of 1:1 in the monomer feed. The cyclization of DAP was almost exclusively suppressed in the Copolymerization. Gelation was promoted from 25% of the gel-point conversion for the DAP homopolymerization to 9% of the minimum one observed. Copolymerizability of DAP (M₁) with dialkyl fumarates (M₂) was quite high, with the following monomer reactivity ratios M₂, r₁, r₂: DEF, 0.01, 1.25; DBF, 0.02, 1.01; DOF, 0.02, 0.96. These results are discussed in mechanistic detail.     

Studies of the polymerization of diallyl compounds. XXVII. Copolymerization of diallyl tartrate with several vinyl monomers

The radical copolymerization of diallyl tartrate (DATa) (M₁) with diallyl succinate (DASu), diallyl phthalate (DAP), allyl benzoate (ABz), vinyl acetate (VAc), or styrene (St) was investigated in order to disclose in more detail the characteristic hydroxyl group's effect observed in the homopolymerization of DATa. In the copolymerization with DASu or DAP as a typical diallyldicarboxylate, the dependence of the rate of copolymerization on monomer composition was different for different copolymerization systems and unusual values larger than unity for the product of monomer reactivity ratios, r₁r₂, were obtained. In the copolymerization with ABz or VAc (M₂), the r₁ and r₂ values were estimated to be 1.50 and 0.64 for the DATa/ABz system and 0.76 and 2.34 for the DATa/VAc system, respectively; the product r₁r₂ for the latter copolymerization system was found again to be larger than unity. In the copolymerization with St, the largest effect due to DATa monomer of high polarity was observed. Solvent effects were tentatively examined to improve the copolymerizability of DATa. These results are discussed in terms of hydrogen-bonding ability of DATa.     

Voltammetric determination of stability constants of lead complexes with diallyl disulfide,dimethyl disulfide,and diallyl sulfide

The complexation of Pb~(2+)by diallyl disulfide(DADS), dimethyl disulfide(DMDS) and diallyl sulfide(DAS)has been studied by differential pulse voltammetry. Stability constants,(log b), of the 1:1(PbL) and 1:2(PbL_2) complexes, where L = ligand, were found to be in the range of ca. 3.8–4.2 and 9.4–10.2,respectively. Complex formation is accompanied with a significant decrease in the peak current and the shift of the Pb2+/Pb half-wave potential to a higher one upon the addition of the sulfur containing ligands(L). The formation of 1:1 and 1:2 complexes, i.e., PbL~(2+)and PbL_2~(2+)was observed in the case of the three ligands. The consecutive formation constants of labile lead complexes with DADS, DMDS, and DAS were determined at 298 K by the method of De Ford and Hume. Apparently due to the large size of the lead ion,steric hindrance caused by the greater steric bulk of DADS compared to that of DMDS have little or no effects on the formation constants, so that very similar values were obtained in the case of the two ligands. Also, the possible participation of C=C double bonds in coordination with the metal center in the case of DADS appears to compensate for the steric effects caused by the larger size of this ligand. In agreement with the Jorgensen principle of symbiosis, the second formation constants were found to be approximately six orders of magnitude greater than the first ones.