Evaluation of <Superscript>13</Superscript>C NMR spectra of cyclopropenyl and cyclopropyl acetylenes by theoretical calculations

A convenient methodology was developed for a very accurate calculation of ¹³C NMR chemical shifts of the title compounds. GIAO calculations with density functional methods (B3LYP, B3PW91, PBE1PBE) and 6-311+G(2d,p) basis set predict experimental chemical shifts of 3-ethynylcyclopropene (1), 1-ethynylcyclopropane (2) and 1,1-diethynylcyclopropane (3) with high accuracy of 1–2 ppm. The present article describes in detail the effect of geometry choice, density functional method, basis set and effect of solvent on the accuracy of GIAO calculations of ¹³C NMR chemical shifts. In addition, the particular dependencies of ¹³C chemical shifts on the geometry of cyclopropane ring were investigated.     

Study of allylic rearrangement in (μ-H)Os3(μ-O=CNRCH2CH=CH2)(CO)10 (R=H or CH3) clusters

The migration of the double bond in the allylcarboxamide ligands of (μ-H)Os₃(μ-O=CN RCH₂CH=CH₂) (CO)₁₀ (R=H (1) or CH₃ (2)), (μ-D)Os₃(μ-O=CNDCH₂CH=CH₂) (CO)₁₀, and (μ-H)Os₃(μ-O=CNHCD₂CH=CH₂)(CO)₁₀ clusters was studied by¹H,²H, and¹³C NMR spectroscopy. Neither μ-D nor ND groups in the deuterated complexes are directly involved in prototropic processes of allylic rearrangement. Initially, the deuterium atom of the CD₂ group migrates to the ψ-carbon atom of the allyl fragment to form the −CD=CH-CH₂D propenyl moiety, in which the deuterium and hydrogen atoms are gradually redistributed between the ψ-and β-carbon atoms. The triosmium cluster complexes containing the bridging carboxamide ligands O=CNRR' catalyze the allylic rearrangement ofN-allylacetamide. Based on the data obtained, the probable scheme of the allylic rearrangements in clusters1 and2 was proposed. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 11, pp. 2182–2186, November, 1999.     

Co<Superscript>II</Superscript> and Rh<Superscript>I</Superscript> complexes with <Emphasis Type="Italic">C</Emphasis><Subscript>2</Subscript>-symmetric chiral diamines of the dioxolane series

The reaction of di-μ-chlorobis(1,5-cyclooctadiene)dirhodium with (4S, 5S)-2,2-dimethyl-4,5-bis(methylaminomethyl)-1,3-dioxolane (1) gave the complex [Rh(cod)(1)]Cl (cod is 1,5-cyclooctadiene). The composition of the complexes CoCl₂ · L₂ and [Rh(cod)(L₂)]X (L₂ = 1, (4S,5S)-2,2-dimethyl-4,5-bis(aminomethyl)-1,3-dioxolane, and (4S, 5S)-2,2-dimethyl-4,5-bis(dimethylaminomethyl)-1,3-dioxolane; X = Cl, TfO) was studied using IR and ¹H NMR spectroscopy. In the Rh^I cyclooctadienediamine complexes, the diene molecule forms a stronger bond with the metal atom than that in the cyclooctadienediphosphine analogs. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 2270–2274, October, 2005.     

Reactions of 2-(4,5-dihydro-3-furyl)-1,3-diphenyl-1,3-diaza-2λ<Superscript>3</Superscript>-phospholidine and 4,5-dihydro-3-furylphosphonous diamides with nitrile imines

Reactions of 2-(4,5-dihydro-3-furyl)-1,3-diphenyl-1,3-diaza-2λ³-phospholidine (1) with nitrile imines are multistep processes involving cleavage of one P-N bond of the diazaphospholidine ring to form substituted 5-(2-chloroethyl)-4-(N,N′-diphenylethylenediamino)-1,4-dihydro-1,2,4λ⁵-diazaphosphorines 4 as final products. Analogs of phospholidine 1, namely, 4,5-dihydro-3-furylphosphonous dipiperidide and dimorpholide, react with C,N-diphenylnitrile imine with retention of both P-N bonds to give 5-(2-hydroxyethyl)-1,2,4-diazaphosphorinium chlorides. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 7, pp. 1590–1593, July, 2005.     

Functionalization of one or two methyl groups in the [Cp*<Subscript>2</Subscript>RuBr]<Superscript>+</Superscript>Br<Superscript>−</Superscript> complex in the reaction with bromine

The reaction of [Cp*₂RuBr]⁺Br⁻ with bromine in CH₂Cl₂ (CD₂Cl₂) in an inert atmosphere at room temperature produces the complexes [Cp*Ru(Br)C₅Me₄CH₂Br]⁺Br₃ ⁻ (syn conformer), [Cp*Ru(Br)C₅Me₃(CH₂Br)₂]⁺ (syn and anti conformers), and [Ru(Br)(C₅Me₄CH₂Br)₂]⁺ (syn conformer). All complexes were characterized by ¹H and ¹³C NMR spectroscopy; the former complex, by elemental analysis. These complexes were also prepared by the reaction of [Cp*RuC₅Me₄CH₂]⁺BF₄ ⁻ with bromine in CH₂Cl₂. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 12, pp. 2712–2718, December, 2005.     

Tricarbonylchromium complexes with phenalene. Synthesis, structure, and thermal rearrangements

The reaction of phenalene with Cr(CO)₃Py₃/BF₃·OEt₂ afforded a mixture of two isomeric complexes, tricarbonyl(6a,7-9,9a,9b-·⁶-phenalene)chromium (1) and tricarbonyl(3a,6a,9b,4-6-·⁶-phenalene)chromium (2). Deprotonation of the mixture of compounds1 and2 followed by treatment with MeI, BuⁿI, or D₂O gave complexesexo-1-R-1 (3–5: R=Me (3), Buⁿ (4), or D (5)). The molecular geometry of complex3 was established by X-ray structural analysis. Heating of complex5 in toluene or C₆F₆ at 90–110 °C resulted in redistribution of deuterium among positionsexo-1,endo-1, and 3 in the resulting complexes of types1 and2 via sigmatropic shifts of the H _exo and H _endo atoms in the nonaromatic ring as well asvia inter-ring migrations of the tricarbonylchromium group. In the case of3, the methyl label is distributed among positionsexo-1 and3 to form isomeric complexes with similar structures (exo-1-Me-2 (6), 3-Me-2 (7), and 3-Me-1 (8), respectively)via processes analogous to those observed in the case of isomerization of compound5 (except for migration of the H _exo atom). The mechanisms of these rearrangements are discussed. Translated fromIzvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1863–1880, October, 1997.     

Combination of <Superscript>13</Superscript>C/<Superscript>113</Superscript>Cd NMR,potentiometry, and voltammetry in characterizing the interactions between Cd and two models of the main components of soil organic matter

This work allowed the characterization of the Cd-binding sites of two compounds taken as models for exudates, the main components of soil organic matter (SOM). The studied compounds were exopolysaccharides (EPS), specifically exudates of roots (polygalacturonic acid) and of soil bacteria (Phytagel). Potentiometric acid–base titrations were performed and fitting of the obtained results indicated the presence of two main classes of acidic sites, defined by their pK _a values, for both EPS but of a different nature when comparing the two compounds. The two studied exopolysaccharides presented different acidic/basic site ratios: 0.15 for Phytagel and 0.76 for polygalacturonic acid. Spectroscopic techniques (¹³C/¹¹³Cd NMR, FTIR) distinguished different Cd surroundings for each of the studied EPS, which is in agreement with the titration results. Furthermore, these analyses indicated the presence of –COOH and –OH groups in various proportions for each exopolysaccharide, which should be linked to their reactivity towards cadmium. Cadmium titrations (voltammetric measurements) also differentiated different binding sites for each compound and allowed the determination of the strength of the Cd-binding site of the EPS. Fitting of the results of such voltammetric measurements was performed using PROSECE (Programme d’Optimisation et de Speciation Chimique dans l’Environnement), a software coupling chemical speciation calculation and binding parameter optimization. The fitting, taking into account the Cd²⁺/H⁺ competition towards exopolysaccharides, confirmed the acid-base titrations and spectroscopic analyses by revealing two classes of binding sites: (i) one defined as a strong complexant regarding its Cd²⁺–EPS association (logK = 9–10.4) and with basic functionality regarding H⁺–EPS association (pK _a = 11.3–11.7), and (ii) one defined as a weak complexant (logK = 7.1–8.2) and with acidic functionality (pK _a = 3.7–4.0). Therefore the combination of spectroscopic analyses, voltammetry, and fitting allowed the precise characterization of the binding sites of the studied exopolysaccharides, mimicking the main SOM components. Furthermore, the binding parameters obtained by fitting can be used in biogeochemical models to better define the role of key SOM compounds like exudates of roots and of soil bacteria on trace metal transport or assimilation.     

Effects of La<Superscript>3+</Superscript> on inward K<Superscript>+</Superscript> channels at plasma membrane in guard cells

The effects of La³⁺ on inward K⁺ channels at plasma membrane in vicia guard cells are investigated using the whole-cell patch-clamp recording mode. It is shown that La³⁺ on both sides of plasma membrane blocks inward K⁺ currents in a concentration-dependent manner, indicating that La³⁺ binding sites may exist on both sides of plasma membrane in guard cells in vicia. The dose response is fitted by the Michaelis-Menten relation characterized by an inhibitor constant K _i of 2.56±0.25 μmol · L⁻¹ (outside membrane) and (1.18±0.11)×10⁻¹⁵ mol · L⁻¹ (inside membrane). Intracellular La³⁺ has much stronger inhibitory effect on inward K⁺ currents than extracellular La³⁺ does, suggesting there may exist stronger binding sites inside membrane than outside membrane. Since ion channel activities of guard cells directly affect plant stomatal movement and water status, our results imply that rare earth elements might have potential practical values in regulating plant water status and strengthening plant drought endurance.     

New glycosidic and other constituents from hulls of <Emphasis Type="Italic">Oryza sativa</Emphasis>

Three new compounds, 4-hydroxymethylene-7-(9,9,13-trimethylcyclohexyl)-heptanyl-3′,7′,7′-trimethylcyclohexa-2′,4′-dien-1′-oate (1), 1-(n-hexadec-7-enoxy)-6-(n-octadecanoxy)-β-D-glucopyranoside (2), and (Z)-12-hydroxy-9-octadecenoic acid-12-β-D-glucopyranoside (3), along with the known compound hexacosanoic acid (4), were isolated and identified from the rice hulls of Oryza sativa. Their structures were elucidated by 1D and 2D NMR spectroscopic techniques (¹H-¹H COSY, ¹H-¹³C HETCOR, DEPT) aided by EIMS, FABMS, HRFABMS, and IR spectra. Published in Khimiya Prirodnykh Soedinenii, No. 4, pp. 344–347, July–August, 2007.     

(Tetramethylcyclobutadiene)cobalt complexes 7. Mono- and dinuclear arene complexes containing the [(C<Subscript>4</Subscript>Me<Subscript>4</Subscript>)Co]<Superscript>+</Superscript> fragment

The mononuclear arene complexes [Cb*Co(arene)]⁺ (3a–g; Cb* = C₄Me₄; arene is biphenyl (a), diphenylmethane (b), 1,2-diphenylethane (c), diphenyl ether (d), p-terphenyl (e), 1,2-dimesitylethane (f), or 1,3-dimesitylpropane (g)) were synthesized by the reactions of arenes either with the benzene complex [Cb*Co(C₆H₆)]⁺ (1) under visible light irradiation or with the acetonitrile derivative [Cb*Co(MeCN)₃]⁺ (2) in refluxing THF. The reactions of 2 with 1,2-diphenyle-thane, 1,3-dimesitylpropane, and p-terphenyl in a ratio of 2: 1 afforded the dinuclear complexes [Cb*Co(μ-η:η-arene)CoCb*]²⁺ (4c,e,g). The stability of the dinuclear arene complexes was estimated by DFT calculations. The structures of the complexes [3a]PF₆ and [3e]PF₆ ere established by X-ray diffraction. For Part 6, see Ref. 1. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 3, pp. 535–539, March, 2008.     

Quantum-Chemical Investigation of Keto-enol-enethiol Tautomerism in 3-oxo-3-R<Superscript>1</Superscript>-N-R<Superscript>2</Superscript>-propanethioamides

The keto-enol-enethiol tautomerism in 3-oxo-3-R¹-N-R²-propanethioamides under vacuum and in acetone was studied in terms of density functional theory. It was established that the equilibrium depends on the structure of the 3-oxo-3-R¹-N-R²-propanethioamides and on the nature of the solvent, but the most stable form is as a rule the keto form stabilized by an intramolecular hydrogen bond. __________ Translated from Teoreticheskaya i Eksperimental'naya Khimiya, Vol. 41, No. 5, pp. 272–277, September–October, 2005.     

Colorimetric and electrochemical Pb<Superscript>2+</Superscript> detection by imine-bridged tetrathiafulvalene-pyridine derivatives

Imine-bridged TTF-π-pyridine derivatives, 2NTTF, 3NTTF and 4NTTF, were synthesized and the cation-binding study was performed. It is noted that with the addition of the micromolar concentration of Pb²⁺ to the solution, these compounds display remarkable changes in solution color, ¹H NMR spectra and electrochemical properties. The nitrogen atom of the imine-bridge in 2NTTF not only serves as a π-conjugated spacer but also participates in the sensing and coordinating properties. Supported by the National Natural Science Foundation of China (Grant Nos. 20732007, 20728506 & 20672122), the Ministry of Science and Technology of China (Grant Nos. 2006CB806105, 2007CB808004, 2007CB936001 & 2009CB-22008) and the Bureau for Basic Research of the Chinese Academy of Sciences     

Quantum chemical analysis of possible fragmentation of [M + H]<Superscript>+</Superscript> and [M + Na]<Superscript>+</Superscript> complexes of monosubstituted methane,cyclohexane, and benzene derivatives in mass spectrometric studies

The formation and fragmentation energies of the proton and sodium cation complexes with monosubstituted methane, cyclohexane, and benzene derivatives in which carbon atoms are bonded to substituents (NH₂, OH, F, Cl, Br, ONO₂, NO₂, COOH, CN, and Ph) were calculated by the B3LYP/6-31G(d) method. For [M + Na]⁺ complexes, the formation energies are much lower (and differ from one another to a much lesser extent), while the dissociation energies are much higher, than the corresponding energies of the [M + H]⁺ complexes. Na⁺ cation shows a lower selectivity toward localization at functional groups in molecules compared to H⁺. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 2, pp. 246–249, February, 2008.     

A new flavonol derivative from <Emphasis Type="Italic">Fagopyrum dibotrys</Emphasis>

A new flavonol derivative 3, 8-dihydroxy-10-methoxy-5-H-isochromeno[4, 3-b]chromen-7-one (1) together with four known compounds, glutinone (2), luteolin (3), acacetin 7-O-α-L-rhamnopyranosyl- (1→6)-β-D-glucopyranoside (4), and rutin (5) were isolated from the dried roots of Fagopyrum dibotrys. Their structures were determined by UV, IR, MS, ¹H, and ¹³C NMR spectroscopic analysis, including 2D NMR. Published in Khimiya Prirodnykh Soedinenii, No. 6, pp. 567–568, November–December, 2008.     

Local structure and photoluminescent characteristics of Eu<Superscript>3+</Superscript> in ZnO–SiO<Subscript>2</Subscript> glasses

The photoluminescence properties of xZnO–(100−x)SiO₂ (x = 0, 5, 10, 20) containing 1% Eu₂O₃ prepared by a sol–gel method were systematically investigated. The results indicated that the relative proportion of f–f transitions to charge transfer (CT) absorption decreased with the increase of ZnO concentration. The intensity of ⁵D₀–⁷F_J transitions of Eu³⁺ ions was enhanced with the increase of ZnO content due to local structure changes and decreased quantities of Eu³⁺ ions clusters. The results of fluorescence line narrow (FLN) spectra indicated that Eu³⁺ ions occupied one site in SiO₂ glass and two sites in ZnO–SiO₂ glasses. The second-order crystal field parameters were calculated. B₂₀ and B₂₂ for site 1 increased with excitation energy, while ones hardly changed for site 2.     

Manifestation of electron-nuclear dynamics in <Superscript>59</Superscript>Co NQR spectra of a series of cobaltocenium derivatives

A coupling equation relating the quadrupole coupling constant (e² Qq _zz ) to the asymmetry parameter (η) of the electric field gradient for a series of cobaltocenium derivatives (⁵⁹Co NQR) is derived. The estimates of the correlation times of “slow” modulations of electron motions by tunneling processes lie in the range from 10⁻¹² to 10⁻¹⁴ s. This corresponds to the interval of the characteristic times of nuclear motions. Published in Russian in Izvestiya Akademii Nauk. Seriya Khimicheskaya, No. 10, pp. 1919–1923, October, 2007.     

Structure of lipid A from the marine gram-negative bacterium <Emphasis Type="Italic">Pseudoalteromonas nigrifaciens</Emphasis> IAM 13010<Superscript>T</Superscript>

The structure of lipid A from the marine γ-proteobacterium Pseudoalteromonas nigrifaciens IAM 13010^T that was prepared by hydrolysis of the corresponding lipopolysaccharide by acetic acid (1%) was determined by chemical analysis, ¹³C NMR spectroscopy, and MALDI/TOF and LSIMS mass spectrometry. It was shown that lipid A is a β-1,6-bonded disaccharide of glucosamine that is substituted by two phosphoric acids (in the C1 and C4′ positions), two (R)-3-hydroxyalkanoic (normal and branched) acids with ester bonding (at the C3 and C3′-positions), and (R)-3-hydroxydodecanoic and (R)-3-dodecanoyloxydodecanoic acids (both with amide bonding at C2′ and C2, respectively). It was hypothesized that this type of structure is typical of lipid A from bacteria of the genus Pseudoalteromonas in general. __________ Translated from Khimiya Prirodnykh Soedinenii, No. 5, pp. 425–429, September–October, 2007.     

Novel methodology for the study of mercury methylation and reduction in sediments and water using <Superscript>197</Superscript>Hg radiotracer

Mercury tracers are powerful tools that can be used to study mercury transformations in environmental systems, particularly mercury methylation, demethylation and reduction in sediments and water. However, mercury transformation studies using tracers can be subject to error, especially when used to assess methylation potential. The organic mercury extracted can be as low as 0.01% of the endogenous labeled mercury, and artefacts and contamination present during methylmercury (MeHg) extraction processes can cause interference. Solvent extraction methods based on the use of either KBr/H₂SO₄ or HCl were evaluated in freshwater sediments using ¹⁹⁷Hg radiotracer. Values obtained for the ¹⁹⁷Hg tracer in the organic phase were up to 25-fold higher when HCl was used, which is due to the coextraction of ¹⁹⁷Hg²⁺ into the organic phase during MeHg extraction. Evaluations of the production of MeHg gave similar results with both MeHg extraction procedures, but due to the higher Hg²⁺ contamination of the controls, the uncertainty in the determination was higher when HCl was used. The Hg²⁺ contamination of controls in the HCl extraction method showed a nonlinear correlation with the humic acid content of sediment pore water. Therefore, use of the KBr/H₂SO₄ method is recommended, since it is free from these interferences. ¹⁹⁷Hg radiotracer (T _1/2 = 2.673 d) has a production rate that is about 50 times higher than that of ²⁰³Hg (T _1/2 = 46.595 d), the most frequently used mercury radiotracer. Hence it is possible to obtain a similar level of performance to ²⁰³Hg when it is used it in short-term experiments and produced by the irradiation of ¹⁹⁶Hg with thermal neutrons, using mercury targets with the natural isotopic composition. However, if the 0.15% natural abundance of the ¹⁹⁶Hg isotope is increased, the specific activity of the ¹⁹⁷Hg tracer can be significantly improved. In the present work, ¹⁹⁷Hg tracer was produced from mercury 51.58% enriched in the ¹⁹⁶Hg isotope, and a 340-fold increase in specific activity with respect to natural mercury targets was obtained. When this high specific activity tracer is employed, mercury methylation and reduction experiments with minimum mercury additions are feasible. Tracer recovery in methylation experiments (associated with Me¹⁹⁷Hg production from ¹⁹⁷Hg²⁺ spike, but also with Hg²⁺ contamination and Me¹⁹⁷Hg artefacts) with marine sediments was about 0.005% g⁻¹ WS (WS: wet sediment) after 20 h incubation with mercury additions of 0.05 ng g⁻¹ WS, which is far below natural mercury levels. In this case, the amount of Hg²⁺ reduced to Hg⁰ (expressed as the percent ¹⁹⁷Hg⁰ recovered with respect to the ¹⁹⁷Hg²⁺ added) varied from 0.13 to 1.6% g⁻¹ WS. Me¹⁹⁷Hg production from ¹⁹⁷Hg²⁺ spike after 20 h of incubation of freshwater sediment ranged from 0.02 to 0.13% g⁻¹ WS with mercury additions of 2.5 ng g⁻¹ WS, which is also far below natural levels. ¹⁹⁷Hg⁰ recoveries were low, 0.0058 ± 0.0013% g⁻¹ WS, but showed good reproducibility in five replicates. Me¹⁹⁷Hg production from ¹⁹⁷Hg²⁺ spiked in freshwater samples ranged from 0.1 to 0.3% over a period of three days with mercury additions of 10 ng L⁻¹. A detection limit of 0.05% for Me¹⁹⁷Hg production from ¹⁹⁷Hg²⁺ spike was obtained in seawater in a 25 h incubation experiment with mercury additions of 12 ng L⁻¹.     

Structure of Galactomannans from <Emphasis Type="Italic">Gleditsia delavayi</Emphasis> and <Emphasis Type="Italic">G. aquatica</Emphasis> by <Superscript>1</Superscript>H and <Superscript>13</Superscript>C NMR Spectroscopy

The structure of galactomannans isolated from seeds of G. delavayi and G. aquatica was studied by ¹H and ¹³C NMR spectroscopy. It was found that the galactomannans consisted mainly of β-1-4-bound mannopyranoses, a part of which was substituted on the C-6 hydroxyl by terminal units of α-galactopyranose.__________Translated from Khimiya Prirodnykh Soedinenii, No. 1, pp. 12–13, January–February, 2005.     

<Superscript>1</Superscript>H NMR spectroscopy in the study of the three-dimensional structure of 7-alkoxyalkyl-3-thia-7-azabicyclo-[3.3.1]nonan-9-ones and some of their derivatives

¹H NMR spectroscopy was used to establish that 7-alkoxyalkyl-3-thia-7-azabicyclo[3.3.1]nonan-9-ones and their decarbonylated derivatives in deuterochloroform solution exist in the double chair conformation. The predominantly formed secondary alcohols isomers have preferred double chair conformation with the hydroxyl group equatorial relative to the plane of the piperidine ring. On the other hand, the epimeric alcohols have predominant boat-chair conformation; the piperidine ring takes the boat form due to intramolecular hydrogen bonding between the unshared electron pair of the nitrogen atom and hydroxyl group proton. Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 11, pp. 1716–1725, November, 2008.